EY691574

Overview
NameEY691574
Unique NameEY691574
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length855
Libraries
Library NameType
Sweet orange bark, greenhouse plantcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY691574 vs. ExPASy Swiss-Prot
Match: SYP71_ARATH (Syntaxin-71 OS=Arabidopsis thaliana GN=SYP71 PE=1 SV=1)

HSP 1 Score: 179.104 bits (453), Expect = 2.754e-44
Identity = 102/189 (53.97%), Postives = 122/189 (64.55%), Query Frame = 2
Query:   14 MSVIDLITRVDAICXXXXXXXXXXXXELNVYGDDAFARLYGVVQADLDAALQKSEAAATEKNRATAVAMNAEIRRTKARLLEEVAKLQRLAFKKVKGLSKEELEARSDLVAALKDRIEGIPD--XXXXXXXXXXXXXXXXXXXXIKFDTYSGGKFDDEYFQETEESSGA*QEYDMRRMDHEQGWDVRGE 574
            M+VID++TRVD+IC            E N+ GDDAFARLYG  +  ++ AL+K+E    EKNRA AVAMNAEIRRTKARL EEV KLQRLA K+VKGL+ EEL AR+DLV AL  RIE IPD                      IKFD  S G+FDD+YFQE+ ESS   QEY+MR++  EQG D+  E
Sbjct:    1 MTVIDILTRVDSICKKYDKYDVDKQREANISGDDAFARLYGAFETQIETALEKAELVTKEKNRAAAVAMNAEIRRTKARLSEEVPKLQRLAVKRVKGLTTEELAARNDLVLALPARIEAIPDGTAGGPKSTSAWTPSSTTSRPDIKFD--SDGRFDDDYFQESNESSQFRQEYEMRKIKQEQGLDMISE 187          
BLAST of EY691574 vs. ExPASy Swiss-Prot
Match: SYP72_ARATH (Syntaxin-72 OS=Arabidopsis thaliana GN=SYP72 PE=2 SV=1)

HSP 1 Score: 162.925 bits (411), Expect = 2.042e-39
Identity = 92/189 (48.68%), Postives = 119/189 (62.96%), Query Frame = 2
Query:   14 MSVIDLITRVDAICXXXXXXXXXXXXELNVYGDDAFARLYGVVQADLDAALQKSEAAATEKNRATAVAMNAEIRRTKARLLEEVAKLQRLAFKKVKGLSKEELEARSDLVAALKDRIEGIPD--XXXXXXXXXXXXXXXXXXXXIKFDTYSGGKFDDEYFQETEESSGA*QEYDMRRMDHEQGWDVRGE 574
            M VID+I RVD IC            E+   GDDAF+RL+  + +D++A L+K+E A+TEKNRA AVAMNAE+RRTKARL E+V KLQ+LA KK+KGL++EE E+R DLV AL DR++ IPD                      IKFD  S    DD +FQ++EESS   QEY+MRR   ++G D+  E
Sbjct:    1 MPVIDIIFRVDEICKKYDKYDIDKHREIGASGDDAFSRLFTSIDSDIEAVLRKAELASTEKNRAAAVAMNAEVRRTKARLAEDVVKLQKLAVKKIKGLTREERESRCDLVIALADRLQAIPDGNEHGAKQANSDWGGASAPNKNIKFD-MSEEDMDDGFFQQSEESSQFRQEYEMRRKKQDEGLDIISE 188          
BLAST of EY691574 vs. ExPASy Swiss-Prot
Match: SYP73_ARATH (Syntaxin-73 OS=Arabidopsis thaliana GN=SYP73 PE=2 SV=1)

HSP 1 Score: 159.073 bits (401), Expect = 2.949e-38
Identity = 92/177 (51.98%), Postives = 114/177 (64.41%), Query Frame = 2
Query:   14 MSVIDLITRVDAICXXXXXXXXXXXXELNVYGDDAFARLYGVVQADLDAALQKSEAAATEKNRATAVAMNAEIRRTKARLLEEVAKLQRLAFKKVKGLSKEELEARSDLVAALKDRIEGIPDXXXXXXXXXXXXXXXXXXXXIKFDT-YSGGKFDDEYFQETEESSGA*QEYDMRRM 541
            M VIDLITRVD+IC            + NV GDDAF+RLY  V+  L+  LQK+E  ++E N+A AVAMNAEIRRTKARLLE + KLQRL+ KKVKGLSKEEL+AR+DLV +L+D+IE IP+                    I+FDT  S  +   EYFQ T ES    QEY+M+R+
Sbjct:    1 MGVIDLITRVDSICKKYEKYDINRQRDANVSGDDAFSRLYSAVEYALETVLQKTEDLSSETNKAKAVAMNAEIRRTKARLLEGIPKLQRLSLKKVKGLSKEELDARNDLVLSLRDKIEAIPE---SSAPVVGGWEASTSYSNIRFDTNVSDDRIGSEYFQPTGESDQFKQEYEMKRI 174          
The following BLAST results are available for this feature:
BLAST of EY691574 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 3
Match NameE-valueIdentityDescription
SYP71_ARATH2.754e-4453.97Syntaxin-71 OS=Arabidopsis thaliana GN=SYP71 PE=1 ... [more]
SYP72_ARATH2.042e-3948.68Syntaxin-72 OS=Arabidopsis thaliana GN=SYP72 PE=2 ... [more]
SYP73_ARATH2.949e-3851.98Syntaxin-73 OS=Arabidopsis thaliana GN=SYP73 PE=2 ... [more]
back to top
Properties
Property NameValue
Genbank descriptionCS00-C2-003-108-D09-CT.F Sweet orange bark, greenhouse plant Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY691574 ID=EY691574; Name=EY691574; organism=Citrus sinensis; type=EST; length=855bp
CCACGCGTCCGAAATGAGTGTGATAGATTTGATCACGAGAGTCGACGCGA
TTTGCAAGAAATATGACAAGTACGATGTCGATAAACAAAAAGAGCTCAAC
GTCTACGGCGACGACGCTTTCGCTCGCCTGTACGGCGTCGTTCAGGCCGA
CCTCGACGCTGCTCTGCAGAAATCGGAGGCGGCAGCAACAGAGAAAAATC
GTGCGACGGCAGTTGCGATGAACGCGGAGATACGAAGAACAAAAGCTAGG
TTGCTTGAAGAAGTGGCTAAATTACAAAGACTTGCTTTTAAAAAGGTAAA
AGGGCTTTCAAAAGAGGAACTTGAGGCTCGAAGTGACTTAGTTGCTGCTC
TCAAAGATAGAATTGAAGGGATACCTGATGGTTCAGCAGCTGCAGCTAAA
CAAACTGGTGGTGGGACAACTTCGGCCTCATACACAGGAATCAAATTTGA
CACTTATTCAGGTGGGAAATTTGATGATGAATATTTCCAAGAGACCGAAG
AGTCCAGTGGGGCTTAGCAAGAGTATGACATGCGGAGAATGGACCACGAG
CAAGGGTGGGATGTCAGAGGGGAGGGCGGGGGACCCATGCAGGACCTGGG
GAGAGGAGGGCCCGGGGGGCGTGGACAGACGAGGCCCGACGAGAGACGCC
ACGGACCAGGGGGGCGACGGGGGACGGCAGCGGGGCGGGGCGCGCGCGCG
GGGGGACCGGGGGGACCAGGCGCGGGGGAGGAGGCCGCGGGGGAAGGTCG
GGACGAACCGGGGAGAGGGGGCGCGCGGACGCGGCGCGGAGGAGCGGGGG
AGCGAAAGCGCCTAGAGGACTGAGGGGAGAAGGCACGGGACGAAGGAAGG
GGGAG
back to top