EY690225

Overview
NameEY690225
Unique NameEY690225
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length332
Libraries
Library NameType
Sweet orange bark, greenhouse plantcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY690225 vs. ExPASy Swiss-Prot
Match: G3PB_ARATH (Glyceraldehyde-3-phosphate dehydrogenase B, chloroplastic OS=Arabidopsis thaliana GN=GAPB PE=1 SV=2)

HSP 1 Score: 143.28 bits (360), Expect = 3.703e-34
Identity = 65/71 (91.55%), Postives = 68/71 (95.77%), Query Frame = 3
Query:    3 TIDSSLTMVMGDDMVKVVAWYDNEWGYSQRVVDLAHLVATKWPGVAAGGSGDPLEDFCQTNPADEECKVYE 215
            TIDSSLTMVMGDDMVKVVAWYDNEWGYSQRVVDLAHLVA+KWPG  A GSGDPLEDFC+TNPADEECKVY+
Sbjct:  377 TIDSSLTMVMGDDMVKVVAWYDNEWGYSQRVVDLAHLVASKWPGAEAVGSGDPLEDFCKTNPADEECKVYD 447          
BLAST of EY690225 vs. ExPASy Swiss-Prot
Match: G3PB_PEA (Glyceraldehyde-3-phosphate dehydrogenase B, chloroplastic OS=Pisum sativum GN=GAPB PE=2 SV=2)

HSP 1 Score: 142.51 bits (358), Expect = 6.316e-34
Identity = 65/71 (91.55%), Postives = 66/71 (92.96%), Query Frame = 3
Query:    3 TIDSSLTMVMGDDMVKVVAWYDNEWGYSQRVVDLAHLVATKWPGVAAGGSGDPLEDFCQTNPADEECKVYE 215
            TIDSSLTMVMGDDMVKVVAWYDNEWGYSQRVVDLAHLVA KWPG    GSGDPLEDFC+TNPADEECKVYE
Sbjct:  381 TIDSSLTMVMGDDMVKVVAWYDNEWGYSQRVVDLAHLVANKWPGTPKVGSGDPLEDFCETNPADEECKVYE 451          
BLAST of EY690225 vs. ExPASy Swiss-Prot
Match: G3PB_SPIOL (Glyceraldehyde-3-phosphate dehydrogenase B, chloroplastic OS=Spinacia oleracea GN=GAPB PE=1 SV=1)

HSP 1 Score: 127.487 bits (319), Expect = 2.103e-29
Identity = 60/72 (83.33%), Postives = 63/72 (87.50%), Query Frame = 3
Query:    3 TIDSSLTMVMGDDMVKVVAWYDNEWGYSQRVVDLAHLVATKWPGVAAG-GSGDPLEDFCQTNPADEECKVYE 215
            TIDSSLTMVMG DMVKVVAWYDNEWGYSQRVVDLA LVA KWPG+     SGDPLEDFC+ NPADEECK+YE
Sbjct:  380 TIDSSLTMVMGGDMVKVVAWYDNEWGYSQRVVDLADLVANKWPGLEGSVASGDPLEDFCKDNPADEECKLYE 451          
BLAST of EY690225 vs. ExPASy Swiss-Prot
Match: G3PB_TOBAC (Glyceraldehyde-3-phosphate dehydrogenase B, chloroplastic (Fragment) OS=Nicotiana tabacum GN=GAPB PE=2 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 7.040e-21
Identity = 42/44 (95.45%), Postives = 42/44 (95.45%), Query Frame = 3
Query:    3 TIDSSLTMVMGDDMVKVVAWYDNEWGYSQRVVDLAHLVATKWPG 134
            TIDSSLTMVMGDDMVKVVAWYDNEWGYSQRVVDLAHLVA  WPG
Sbjct:  350 TIDSSLTMVMGDDMVKVVAWYDNEWGYSQRVVDLAHLVANNWPG 393          

HSP 2 Score: 29.261 bits (64), Expect = 7.040e-21
Identity = 13/23 (56.52%), Postives = 16/23 (69.57%), Query Frame = 1
Query:  157 THWRISARQTLLMRSAKFMKLKF 225
            +HW   ARQ LLMR+AK M  +F
Sbjct:  402 SHWMSFARQILLMRNAKSMNNRF 424          
BLAST of EY690225 vs. ExPASy Swiss-Prot
Match: G3PA_SPIOL (Glyceraldehyde-3-phosphate dehydrogenase A, chloroplastic OS=Spinacia oleracea GN=GAPA PE=1 SV=2)

HSP 1 Score: 85.1149 bits (209), Expect = 1.197e-16
Identity = 38/42 (90.48%), Postives = 40/42 (95.24%), Query Frame = 3
Query:    3 TIDSSLTMVMGDDMVKVVAWYDNEWGYSQRVVDLAHLVATKW 128
            TIDSSLTMVMGDDMVKV+AWYDNEWGYSQRVVDLA +VA KW
Sbjct:  359 TIDSSLTMVMGDDMVKVIAWYDNEWGYSQRVVDLADIVANKW 400          
BLAST of EY690225 vs. ExPASy Swiss-Prot
Match: G3PA_SINAL (Glyceraldehyde-3-phosphate dehydrogenase A, chloroplastic (Fragment) OS=Sinapis alba GN=GAPA PE=2 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 4.548e-16
Identity = 37/42 (88.10%), Postives = 39/42 (92.86%), Query Frame = 3
Query:    3 TIDSSLTMVMGDDMVKVVAWYDNEWGYSQRVVDLAHLVATKW 128
            TIDSSLTMVMGDDMVKV+AWYDNEWGYSQRVVDLA +VA  W
Sbjct:  191 TIDSSLTMVMGDDMVKVIAWYDNEWGYSQRVVDLADIVANNW 232          
BLAST of EY690225 vs. ExPASy Swiss-Prot
Match: G3PA_ARATH (Glyceraldehyde-3-phosphate dehydrogenase A, chloroplastic OS=Arabidopsis thaliana GN=GAPA PE=1 SV=3)

HSP 1 Score: 83.1889 bits (204), Expect = 4.548e-16
Identity = 37/42 (88.10%), Postives = 39/42 (92.86%), Query Frame = 3
Query:    3 TIDSSLTMVMGDDMVKVVAWYDNEWGYSQRVVDLAHLVATKW 128
            TIDSSLTMVMGDDMVKV+AWYDNEWGYSQRVVDLA +VA  W
Sbjct:  354 TIDSSLTMVMGDDMVKVIAWYDNEWGYSQRVVDLADIVANNW 395          
BLAST of EY690225 vs. ExPASy Swiss-Prot
Match: G3PA_TOBAC (Glyceraldehyde-3-phosphate dehydrogenase A, chloroplastic (Fragment) OS=Nicotiana tabacum GN=GAPA PE=2 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 1.013e-15
Identity = 35/42 (83.33%), Postives = 40/42 (95.24%), Query Frame = 3
Query:    3 TIDSSLTMVMGDDMVKVVAWYDNEWGYSQRVVDLAHLVATKW 128
            T+D+SLTMVMGDDMVKV+AWYDNEWGYSQRVVDLA +VA +W
Sbjct:  350 TVDASLTMVMGDDMVKVIAWYDNEWGYSQRVVDLADIVANQW 391          
BLAST of EY690225 vs. ExPASy Swiss-Prot
Match: G3PA_PEA (Glyceraldehyde-3-phosphate dehydrogenase A, chloroplastic OS=Pisum sativum GN=GAPA PE=2 SV=2)

HSP 1 Score: 81.6481 bits (200), Expect = 1.323e-15
Identity = 35/42 (83.33%), Postives = 39/42 (92.86%), Query Frame = 3
Query:    3 TIDSSLTMVMGDDMVKVVAWYDNEWGYSQRVVDLAHLVATKW 128
            T+DSSLTMVMGDD+VKV+AWYDNEWGYSQRVVDLA +VA  W
Sbjct:  363 TVDSSLTMVMGDDLVKVIAWYDNEWGYSQRVVDLADIVANNW 404          
BLAST of EY690225 vs. ExPASy Swiss-Prot
Match: G3PA_CHLRE (Glyceraldehyde-3-phosphate dehydrogenase A, chloroplastic OS=Chlamydomonas reinhardtii GN=GAPA PE=1 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 2.257e-15
Identity = 36/42 (85.71%), Postives = 39/42 (92.86%), Query Frame = 3
Query:    3 TIDSSLTMVMGDDMVKVVAWYDNEWGYSQRVVDLAHLVATKW 128
            +ID+SLTMVMGDDMVKVVAWYDNEWGYSQRVVDLA + A KW
Sbjct:  331 SIDASLTMVMGDDMVKVVAWYDNEWGYSQRVVDLAEVTAKKW 372          
The following BLAST results are available for this feature:
BLAST of EY690225 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 16
Match NameE-valueIdentityDescription
G3PB_ARATH3.703e-3491.55Glyceraldehyde-3-phosphate dehydrogenase B, chloro... [more]
G3PB_PEA6.316e-3491.55Glyceraldehyde-3-phosphate dehydrogenase B, chloro... [more]
G3PB_SPIOL2.103e-2983.33Glyceraldehyde-3-phosphate dehydrogenase B, chloro... [more]
G3PB_TOBAC7.040e-2195.45Glyceraldehyde-3-phosphate dehydrogenase B, chloro... [more]
G3PA_SPIOL1.197e-1690.48Glyceraldehyde-3-phosphate dehydrogenase A, chloro... [more]
G3PA_SINAL4.548e-1688.10Glyceraldehyde-3-phosphate dehydrogenase A, chloro... [more]
G3PA_ARATH4.548e-1688.10Glyceraldehyde-3-phosphate dehydrogenase A, chloro... [more]
G3PA_TOBAC1.013e-1583.33Glyceraldehyde-3-phosphate dehydrogenase A, chloro... [more]
G3PA_PEA1.323e-1583.33Glyceraldehyde-3-phosphate dehydrogenase A, chloro... [more]
G3PA_CHLRE2.257e-1585.71Glyceraldehyde-3-phosphate dehydrogenase A, chloro... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C2-003-060-B05-CT.F Sweet orange bark, greenhouse plant Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY690225 ID=EY690225; Name=EY690225; organism=Citrus sinensis; type=EST; length=332bp
CCACCATTGACTCTTCATTGACCATGGTCATGGGTGATGATATGGTCAAG
GTTGTTGCCTGGTACGACAATGAATGGGGATACAGCCAAAGGGTTGTCGA
TTTGGCGCATTTGGTTGCAACCAAGTGGCCAGGCGTGGCTGCAGGCGGAA
GCGGAGACCCATTGGAGGATTTCTGCCAGACAAACCCTGCTGATGAGGAG
TGCAAAGTTTATGAAGCTTAAATTCTTTCTTAATTGGTTGGCTAATTAAT
TACATAGGTTTTTCGCAGCCTTTGTCACAAAATGCTTTTATATTAATGAC
AACTGAGTGAGTTGAACAAAAAAAAAAAAAAA
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