EY690154

Overview
NameEY690154
Unique NameEY690154
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length560
Libraries
Library NameType
Sweet orange bark, greenhouse plantcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY690154 vs. ExPASy Swiss-Prot
Match: RS62_ARATH (40S ribosomal protein S6-2 OS=Arabidopsis thaliana GN=RPS6B PE=1 SV=3)

HSP 1 Score: 148.673 bits (374), Expect = 1.849e-35
Identity = 80/106 (75.47%), Postives = 84/106 (79.25%), Query Frame = 2
Query:   11 VRGPKRAS*IRKLFNLSKEDDVRKYVNTYRRTFTTKSGKKVSKAPKIQRLVTPLTLQRKRARISXXXXXXXXXXXXXXXXXXLLATRLKEQRERRSESLAKKRSRL 328
            +RGPKRAS IRKLFNL KEDDVRKYVNTYRRTFT K GKKVSKAPKIQRLVTPLTLQRKRARI+                  LLA+RLKEQR+RRSESLAKKRSRL
Sbjct:  134 MRGPKRASKIRKLFNLGKEDDVRKYVNTYRRTFTNKKGKKVSKAPKIQRLVTPLTLQRKRARIADKKKRIAKANSDAADYQKLLASRLKEQRDRRSESLAKKRSRL 239          
BLAST of EY690154 vs. ExPASy Swiss-Prot
Match: RS6_ASPOF (40S ribosomal protein S6 OS=Asparagus officinalis GN=rps6 PE=2 SV=1)

HSP 1 Score: 145.976 bits (367), Expect = 1.198e-34
Identity = 79/106 (74.53%), Postives = 83/106 (78.30%), Query Frame = 2
Query:   11 VRGPKRAS*IRKLFNLSKEDDVRKYVNTYRRTFTTKSGKKVSKAPKIQRLVTPLTLQRKRARISXXXXXXXXXXXXXXXXXXLLATRLKEQRERRSESLAKKRSRL 328
            +RGPKRAS IRKLFNLSKEDDVRKYVNTYRRTFT K GK  SKAPKIQRLVTPLTLQRKRARI+                  LLA+RLKEQR+RRSESLAKKRSRL
Sbjct:  134 MRGPKRASKIRKLFNLSKEDDVRKYVNTYRRTFTNKKGKTCSKAPKIQRLVTPLTLQRKRARIAEKKKRVAKAKSEAAEYQKLLASRLKEQRDRRSESLAKKRSRL 239          
BLAST of EY690154 vs. ExPASy Swiss-Prot
Match: RS61_ARATH (40S ribosomal protein S6-1 OS=Arabidopsis thaliana GN=RPS6A PE=1 SV=2)

HSP 1 Score: 142.51 bits (358), Expect = 1.325e-33
Identity = 77/106 (72.64%), Postives = 82/106 (77.36%), Query Frame = 2
Query:   11 VRGPKRAS*IRKLFNLSKEDDVRKYVNTYRRTFTTKSGKKVSKAPKIQRLVTPLTLQRKRARISXXXXXXXXXXXXXXXXXXLLATRLKEQRERRSESLAKKRSRL 328
            +RGPKRAS IRKLFNL KEDDVR YVNTYRR FT K GK+VSKAPKIQRLVTPLTLQRKRARI+                  LLA+RLKEQR+RRSESLAKKRSRL
Sbjct:  134 MRGPKRASKIRKLFNLKKEDDVRTYVNTYRRKFTNKKGKEVSKAPKIQRLVTPLTLQRKRARIADKKKKIAKANSDAADYQKLLASRLKEQRDRRSESLAKKRSRL 239          
BLAST of EY690154 vs. ExPASy Swiss-Prot
Match: RS6_TOBAC (40S ribosomal protein S6 (Fragment) OS=Nicotiana tabacum GN=RPS6 PE=2 SV=2)

HSP 1 Score: 99.3673 bits (246), Expect = 1.286e-20
Identity = 64/106 (60.38%), Postives = 70/106 (66.04%), Query Frame = 2
Query:   11 VRGPKRAS*IRKLFNLSKEDDVRKYVNTYRRTFTTKSGKKVSKAPKIQRLVTPLTLQRKRARISXXXXXXXXXXXXXXXXXXLLATRLKEQRERRSESLAKKRSRL 328
            +RGP+       L+   KEDDVRKYVNT    FTTK   K SKAPKIQRLVTPLTLQRKRARI+                  LLA+RLKEQRE+RSESLAKKRSRL
Sbjct:   89 MRGPREPQRSEALY--FKEDDVRKYVNTTAE-FTTKW--KGSKAPKIQRLVTPLTLQRKRARIADKKKRIAKAKSEAAEYQKLLASRLKEQREKRSESLAKKRSRL 189          
BLAST of EY690154 vs. ExPASy Swiss-Prot
Match: RS6_ICTPU (40S ribosomal protein S6 OS=Ictalurus punctatus GN=rps6 PE=2 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 1.422e-19
Identity = 56/101 (55.45%), Postives = 64/101 (63.37%), Query Frame = 2
Query:   17 GPKRAS*IRKLFNLSKEDDVRKYVNTYRRTFTTKSGKKVSKAPKIQRLVTPLTLQRKRARISXXXXXXXXXXXXXXXXXXLLATRLKEQRERRSESLAKKR 319
            GPKRAS IRKLFNLSKEDDVR+YV   RR  T +  K  +KAPKIQRLVTP  LQ KR RI+                  LLA RLKE +E+R E +AK+R
Sbjct:  134 GPKRASRIRKLFNLSKEDDVRQYV--VRRPLTKEGKKPRTKAPKIQRLVTPRVLQHKRRRIALKRQRTQKNKDEAAEYAKLLAKRLKEAKEKRQEKIAKRR 232          
BLAST of EY690154 vs. ExPASy Swiss-Prot
Match: RS6_APLCA (40S ribosomal protein S6 OS=Aplysia californica GN=RPS6 PE=2 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 7.058e-19
Identity = 58/103 (56.31%), Postives = 67/103 (65.05%), Query Frame = 2
Query:   17 GPKRAS*IRKLFNLSKEDDVRKYVNTYRRTFTTKSGKKV-SKAPKIQRLVTPLTLQRKRARISXXXXXXXXXXXXXXXXXXLLATRLKEQRERRSESLAKKRS 322
            GPKRAS IRKLFNLSKEDDVR+YV   RR    + GKK  SKAPKIQRLVTP+ LQRKRAR++                  LLA R+KE +ER+ E   +KRS
Sbjct:  134 GPKRASKIRKLFNLSKEDDVRQYV--VRRPLPERDGKKAKSKAPKIQRLVTPVVLQRKRARMALKKKRVTKKREDHAEYTKLLAQRMKEAKERKME---RKRS 231          
BLAST of EY690154 vs. ExPASy Swiss-Prot
Match: RS6_ONCMY (40S ribosomal protein S6 OS=Oncorhynchus mykiss GN=rps6 PE=2 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 1.204e-18
Identity = 53/101 (52.48%), Postives = 64/101 (63.37%), Query Frame = 2
Query:   17 GPKRAS*IRKLFNLSKEDDVRKYVNTYRRTFTTKSGKKVSKAPKIQRLVTPLTLQRKRARISXXXXXXXXXXXXXXXXXXLLATRLKEQRERRSESLAKKR 319
            GPKRAS IRKLFNL+KEDDVR+YV   RR  T +  K  +KAP+IQRLVTP  LQ KR RI+                  LLA R+KE +E+R E +AK+R
Sbjct:  134 GPKRASKIRKLFNLAKEDDVRQYV--VRRPLTKEGKKPRTKAPRIQRLVTPRVLQHKRRRIALKKQRTQKNKEEASEYAKLLAKRMKEAKEKRQEQIAKRR 232          
BLAST of EY690154 vs. ExPASy Swiss-Prot
Match: RS6_RAT (40S ribosomal protein S6 OS=Rattus norvegicus GN=Rps6 PE=1 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 2.054e-18
Identity = 53/101 (52.48%), Postives = 63/101 (62.38%), Query Frame = 2
Query:   17 GPKRAS*IRKLFNLSKEDDVRKYVNTYRRTFTTKSGKKVSKAPKIQRLVTPLTLQRKRARISXXXXXXXXXXXXXXXXXXLLATRLKEQRERRSESLAKKR 319
            GPKRAS IRKLFNLSKEDDVR+YV   R+    +  K  +KAPKIQRLVTP  LQ KR RI+                  LLA R+KE +E+R E +AK+R
Sbjct:  134 GPKRASRIRKLFNLSKEDDVRQYV--VRKPLNKEGKKPRTKAPKIQRLVTPRVLQHKRRRIALKKQRTKKNKEEAAEYAKLLAKRMKEAKEKRQEQIAKRR 232          
BLAST of EY690154 vs. ExPASy Swiss-Prot
Match: RS6_MOUSE (40S ribosomal protein S6 OS=Mus musculus GN=Rps6 PE=1 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 2.054e-18
Identity = 53/101 (52.48%), Postives = 63/101 (62.38%), Query Frame = 2
Query:   17 GPKRAS*IRKLFNLSKEDDVRKYVNTYRRTFTTKSGKKVSKAPKIQRLVTPLTLQRKRARISXXXXXXXXXXXXXXXXXXLLATRLKEQRERRSESLAKKR 319
            GPKRAS IRKLFNLSKEDDVR+YV   R+    +  K  +KAPKIQRLVTP  LQ KR RI+                  LLA R+KE +E+R E +AK+R
Sbjct:  134 GPKRASRIRKLFNLSKEDDVRQYV--VRKPLNKEGKKPRTKAPKIQRLVTPRVLQHKRRRIALKKQRTKKNKEEAAEYAKLLAKRMKEAKEKRQEQIAKRR 232          
BLAST of EY690154 vs. ExPASy Swiss-Prot
Match: RS6_MACFA (40S ribosomal protein S6 OS=Macaca fascicularis GN=RPS6 PE=2 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 2.054e-18
Identity = 53/101 (52.48%), Postives = 63/101 (62.38%), Query Frame = 2
Query:   17 GPKRAS*IRKLFNLSKEDDVRKYVNTYRRTFTTKSGKKVSKAPKIQRLVTPLTLQRKRARISXXXXXXXXXXXXXXXXXXLLATRLKEQRERRSESLAKKR 319
            GPKRAS IRKLFNLSKEDDVR+YV   R+    +  K  +KAPKIQRLVTP  LQ KR RI+                  LLA R+KE +E+R E +AK+R
Sbjct:  134 GPKRASRIRKLFNLSKEDDVRQYV--VRKPLNKEGKKPRTKAPKIQRLVTPRVLQHKRRRIALKKQRTKKNKEEAAEYAKLLAKRMKEAKEKRQEQIAKRR 232          
The following BLAST results are available for this feature:
BLAST of EY690154 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 31
Match NameE-valueIdentityDescription
RS62_ARATH1.849e-3575.4740S ribosomal protein S6-2 OS=Arabidopsis thaliana... [more]
RS6_ASPOF1.198e-3474.5340S ribosomal protein S6 OS=Asparagus officinalis ... [more]
RS61_ARATH1.325e-3372.6440S ribosomal protein S6-1 OS=Arabidopsis thaliana... [more]
RS6_TOBAC1.286e-2060.3840S ribosomal protein S6 (Fragment) OS=Nicotiana t... [more]
RS6_ICTPU1.422e-1955.4540S ribosomal protein S6 OS=Ictalurus punctatus GN... [more]
RS6_APLCA7.058e-1956.3140S ribosomal protein S6 OS=Aplysia californica GN... [more]
RS6_ONCMY1.204e-1852.4840S ribosomal protein S6 OS=Oncorhynchus mykiss GN... [more]
RS6_RAT2.054e-1852.4840S ribosomal protein S6 OS=Rattus norvegicus GN=R... [more]
RS6_MOUSE2.054e-1852.4840S ribosomal protein S6 OS=Mus musculus GN=Rps6 P... [more]
RS6_MACFA2.054e-1852.4840S ribosomal protein S6 OS=Macaca fascicularis GN... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C2-003-058-B05-CT.F Sweet orange bark, greenhouse plant Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY690154 ID=EY690154; Name=EY690154; organism=Citrus sinensis; type=EST; length=560bp
CCACGCGTCCGTGAGAGGTCCCAAGAGAGCCTCTTAGATCAGGAAGTTGT
TCAACCTTTCCAAGGAGGATGATGTTAGGAAGTACGTTAACACCTATCGT
CGGACCTTCACAACAAAATCTGGTAAGAAGGTTAGCAAGGCACCGAAAAT
TCAGAGGTTGGTAACTCCTTTGACTCTGCAAAGGAAGCGTGCAAGAATTT
CAGAAAAGAAGCAGAGAATTGCCAAGGCCAAGGCTGAAGCAGCGGAATAC
CAGAAGCTCCTTGCTACCAGGTTGAAGGAGCAGCGTGAACGCCGCAGTGA
GAGTTTGGCAAAGAAGAGGTCTAGGCTCTCTGCTGCCTCAAAGCCATCTA
TTGCAGCTTAGATTCTTTGCTATAGTTGTTCTTTGGTCGGTTATGTATTG
TCCTGCTGAATACTTTCTAATAGGTTGAGGAAATTTCGAGTGTTTTTGAC
TTAATATCCCATGGAATGTGATACAATAACCTTCATAGACACTTTTCCGA
TTTTGTTTACTTAAATTGGTTGATGCTCCCGCTATTCTTCTTTCCCCCAA
CACCCCCACA
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