EY711927

Overview
NameEY711927
Unique NameEY711927
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length930
Libraries
Library NameType
Sweet orange fruit, development stadium (3 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of EY711927 vs. ExPASy Swiss-Prot
Match: YI01_SCHPO (Putative amidase C869.01 OS=Schizosaccharomyces pombe GN=SPAC869.01 PE=2 SV=1)

HSP 1 Score: 130.954 bits (328), Expect = 9.786e-30
Identity = 82/201 (40.80%), Postives = 115/201 (57.21%), Query Frame = 2 
Query:  260 IREATIKDLQLAFKQNKLTSRQLVEFYLGEIHRLNPLLNGVIEVNPDALSQADEADCERSVKAPGSLPG-LHGIPILLKDNIATKDKMNTTAGSYALLGSVVPRDAGVVTK*GKL-VPLFWEG*LE*VG*F*ILKCTQWFLC*GWPRKESYXLSADPWXXXXXXXXXXXXNLVAVSLGTETDGXILSPSXSHSVVGIKPXV 856
            + +ATI  LQ   +   LTS  +V  YL    ++NP +NG++++NPD L+ A E D ER   A G + G LHGIP ++KDN ATKDKM+TTAGSYALLGS+VPRDA VV +  +    LF    L           ++ +   G   +  + L+ +P             N++A +LGTETDG I+ P+  + VVG+KP V
Sbjct:   66 LEDATIDQLQNYMENGILTSTDIVHCYLDRYLQVNPYVNGILQLNPDVLTIASELDDER---ANGIIRGPLHGIPFIVKDNFATKDKMDTTAGSYALLGSIVPRDAYVVKQLREAGAVLFGHATLSEWADMRSNDYSEGYSARGGQSRCPFNLTVNPGGSSSGSAISVASNMIAFALGTETDGSIIDPAMRNGVVGLKPTV 263
The following BLAST results are available for this feature:
BLAST of EY711927 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
YI01_SCHPO9.786e-3040.80Putative amidase C869.01 OS=Schizosaccharomyces po... [more]
back to top
Properties
Property NameValue
Genbank descriptionCS00-C3-702-013-D04-CT.F Sweet orange fruit, development stadium (3 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY711927 ID=EY711927; Name=EY711927; organism=Citrus sinensis; type=EST; length=930bp
CCACGCGTCCGCAACTCTAAGCCAAACAAAGCAAAAGTGATATATAATTA
TAAACCCGTTTGGGGCAGCTGCGCTGCCACCGCGCAGCTGCGCTGCCACC
GCGCAGCTGCTCCCCAGGCCAATTCTAAAGGAATATTCCCCTAAAATTGT
TTAACAAAAGACTACCAATAATAATATGTCATTGACCTTTCCTTTCTTTT
CACATCTACTCCTGATTCTTCTAGCCATGTCAACCGATCGATCAGACGAT
GAATTCCCAATAAGAGAAGCAACTATCAAGGATCTCCAGCTCGCGTTCAA
GCAAAACAAGCTTACGTCCCGGCAGCTGGTTGAATTTTACCTCGGAGAAA
TCCACAGGCTCAACCCGCTGCTCAACGGAGTCATAGAGGTGAACCCTGAT
GCGCTATCCCAAGCTGATGAAGCTGACTGCGAGCGCAGTGTTAAGGCACC
AGGTTCACTGCCCGGTTTACATGGGATTCCTATTCTTCTCAAGGATAACA
TTGCAACCAAGGACAAGATGAACACCACTGCTGGCTCGTATGCTCTGCTC
GGCTCAGTCGTGCCCCGGGATGCTGGTGTGGTGACCAAATGAGGGAAGCT
GGTGCCATTATTCTGGGAAGGCTAGCTTGAGTGAGTGGGCTAATTTTAGA
TCCTCAAATGCACCCAATGGTTTTTGTGCTAAGGGTGGCCAAGGAAAGAA
TCATATNGTCTATCAGCAGATCCCTGGGGGTCGAGCAGTGGCTCAGCAAT
ATCGGTAGCAGCCAACTTGGTTGCAGTGTCACTGGGAACTGAAACTGATG
GNNTCATTCTCTCTCCTTCCAGNTCCCACTCAGTAGTGGGAATCAAACCA
NNCGTGTCTCCACAGCAGAAGCGGAGTCATCCTTTTAACTCTAGACAGAC
TCCGNTGGCCTATTTGCAGACTGAANNCGA
back to top