EY688686
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of EY688686 vs. ExPASy Swiss-Prot
Match: PRP18_RAT (Pre-mRNA-splicing factor 18 OS=Rattus norvegicus GN=Prpf18 PE=2 SV=1) HSP 1 Score: 175.252 bits (443), Expect = 4.000e-43 Identity = 84/163 (51.53%), Postives = 116/163 (71.17%), Query Frame = 2 Query: 122 DELCEEDKILVFFKRLLNEWNQELNEMPEAEKRTAKGKSMVATFKQCARYLNPLFKFCRKKVLPDDIRQALMLMVNCCMKRDYLAAMDHYIRLAIGNAPWPIGVTMVGIHERSAREKIYTNSVAHIMNDETTRKYLQSVKRLMTFCQRRYPTMPSKAVEFNSL 610 D+ + D I F K LL W +ELN + KR+ +GK AT KQ YL PLF+ RK+ LP DI++++ ++ ++R+Y+ A D Y+++AIGNAPWPIGVTMVGIH R+ REKI++ VAH++NDET RKY+Q +KRLMT CQ+ +PT PSK VE+N+L Sbjct: 180 DDHKDMDIITKFLKFLLGVWAKELNSREDYVKRSVQGKLNSATQKQTESYLRPLFRKLRKRNLPADIKESITDIIKFMLQREYVKANDAYLQMAIGNAPWPIGVTMVGIHARTGREKIFSKHVAHVLNDETQRKYIQGLKRLMTICQKHFPTDPSKCVEYNAL 342
BLAST of EY688686 vs. ExPASy Swiss-Prot
Match: PRP18_PONAB (Pre-mRNA-splicing factor 18 OS=Pongo abelii GN=PRPF18 PE=2 SV=1) HSP 1 Score: 174.866 bits (442), Expect = 5.224e-43 Identity = 84/163 (51.53%), Postives = 116/163 (71.17%), Query Frame = 2 Query: 122 DELCEEDKILVFFKRLLNEWNQELNEMPEAEKRTAKGKSMVATFKQCARYLNPLFKFCRKKVLPDDIRQALMLMVNCCMKRDYLAAMDHYIRLAIGNAPWPIGVTMVGIHERSAREKIYTNSVAHIMNDETTRKYLQSVKRLMTFCQRRYPTMPSKAVEFNSL 610 D+ + D I F K LL W +ELN + KR+ +GK AT KQ YL PLF+ RK+ LP DI++++ ++ ++R+Y+ A D Y+++AIGNAPWPIGVTMVGIH R+ REKI++ VAH++NDET RKY+Q +KRLMT CQ+ +PT PSK VE+N+L Sbjct: 180 DDHKDMDIITKFLKFLLGVWAKELNAREDYVKRSVQGKLNSATQKQTESYLRPLFRKLRKRNLPADIKESITDIIKFMLQREYVKANDAYLQMAIGNAPWPIGVTMVGIHARTGREKIFSKHVAHVLNDETQRKYIQGLKRLMTICQKHFPTDPSKCVEYNAL 342
BLAST of EY688686 vs. ExPASy Swiss-Prot
Match: PRP18_MOUSE (Pre-mRNA-splicing factor 18 OS=Mus musculus GN=Prpf18 PE=1 SV=1) HSP 1 Score: 174.866 bits (442), Expect = 5.224e-43 Identity = 84/163 (51.53%), Postives = 116/163 (71.17%), Query Frame = 2 Query: 122 DELCEEDKILVFFKRLLNEWNQELNEMPEAEKRTAKGKSMVATFKQCARYLNPLFKFCRKKVLPDDIRQALMLMVNCCMKRDYLAAMDHYIRLAIGNAPWPIGVTMVGIHERSAREKIYTNSVAHIMNDETTRKYLQSVKRLMTFCQRRYPTMPSKAVEFNSL 610 D+ + D I F K LL W +ELN + KR+ +GK AT KQ YL PLF+ RK+ LP DI++++ ++ ++R+Y+ A D Y+++AIGNAPWPIGVTMVGIH R+ REKI++ VAH++NDET RKY+Q +KRLMT CQ+ +PT PSK VE+N+L Sbjct: 180 DDHKDMDIITKFLKFLLGVWAKELNAREDYVKRSVQGKLNSATQKQTESYLRPLFRKLRKRNLPADIKESITDIIKFMLQREYVKANDAYLQMAIGNAPWPIGVTMVGIHARTGREKIFSKHVAHVLNDETQRKYIQGLKRLMTICQKHFPTDPSKCVEYNAL 342
BLAST of EY688686 vs. ExPASy Swiss-Prot
Match: PRP18_HUMAN (Pre-mRNA-splicing factor 18 OS=Homo sapiens GN=PRPF18 PE=1 SV=1) HSP 1 Score: 174.866 bits (442), Expect = 5.224e-43 Identity = 84/163 (51.53%), Postives = 116/163 (71.17%), Query Frame = 2 Query: 122 DELCEEDKILVFFKRLLNEWNQELNEMPEAEKRTAKGKSMVATFKQCARYLNPLFKFCRKKVLPDDIRQALMLMVNCCMKRDYLAAMDHYIRLAIGNAPWPIGVTMVGIHERSAREKIYTNSVAHIMNDETTRKYLQSVKRLMTFCQRRYPTMPSKAVEFNSL 610 D+ + D I F K LL W +ELN + KR+ +GK AT KQ YL PLF+ RK+ LP DI++++ ++ ++R+Y+ A D Y+++AIGNAPWPIGVTMVGIH R+ REKI++ VAH++NDET RKY+Q +KRLMT CQ+ +PT PSK VE+N+L Sbjct: 180 DDHKDMDIITKFLKFLLGVWAKELNAREDYVKRSVQGKLNSATQKQTESYLRPLFRKLRKRNLPADIKESITDIIKFMLQREYVKANDAYLQMAIGNAPWPIGVTMVGIHARTGREKIFSKHVAHVLNDETQRKYIQGLKRLMTICQKHFPTDPSKCVEYNAL 342
BLAST of EY688686 vs. ExPASy Swiss-Prot
Match: PRP18_BOVIN (Pre-mRNA-splicing factor 18 OS=Bos taurus GN=PRPF18 PE=2 SV=1) HSP 1 Score: 174.866 bits (442), Expect = 5.224e-43 Identity = 84/163 (51.53%), Postives = 116/163 (71.17%), Query Frame = 2 Query: 122 DELCEEDKILVFFKRLLNEWNQELNEMPEAEKRTAKGKSMVATFKQCARYLNPLFKFCRKKVLPDDIRQALMLMVNCCMKRDYLAAMDHYIRLAIGNAPWPIGVTMVGIHERSAREKIYTNSVAHIMNDETTRKYLQSVKRLMTFCQRRYPTMPSKAVEFNSL 610 D+ + D I F K LL W +ELN + KR+ +GK AT KQ YL PLF+ RK+ LP DI++++ ++ ++R+Y+ A D Y+++AIGNAPWPIGVTMVGIH R+ REKI++ VAH++NDET RKY+Q +KRLMT CQ+ +PT PSK VE+N+L Sbjct: 180 DDHKDMDIITKFLKFLLGVWAKELNAREDYVKRSVQGKLNSATQKQTESYLRPLFRKLRKRNLPADIKESITDIIKFMLQREYVKANDAYLQMAIGNAPWPIGVTMVGIHARTGREKIFSKHVAHVLNDETQRKYIQGLKRLMTICQKHFPTDPSKCVEYNAL 342
BLAST of EY688686 vs. ExPASy Swiss-Prot
Match: PRP18_DANRE (Pre-mRNA-splicing factor 18 OS=Danio rerio GN=prpf18 PE=2 SV=1) HSP 1 Score: 171.4 bits (433), Expect = 5.776e-42 Identity = 82/165 (49.70%), Postives = 117/165 (70.91%), Query Frame = 2 Query: 116 NFDELCEEDKILVFFKRLLNEWNQELNEMPEAEKRTAKGKSMVATFKQCARYLNPLFKFCRKKVLPDDIRQALMLMVNCCMKRDYLAAMDHYIRLAIGNAPWPIGVTMVGIHERSAREKIYTNSVAHIMNDETTRKYLQSVKRLMTFCQRRYPTMPSKAVEFNSL 610 N +++ + D I + LL W ++LN + KR+ +GK AT KQ YL PLF+ RKK LP DI++++ ++ ++R+Y+ A D Y+++AIGNAPWPIGVTMVGIH R+ REKI++ VAH++NDET RKY+Q +KRLMT CQ+ +PT PSK VE+N+L Sbjct: 178 NGNDVRDMDIINKVLRFLLGVWAKDLNSREDHIKRSVQGKLASATQKQTESYLEPLFRKLRKKNLPADIKESITDIIKFMLEREYVKANDAYLQMAIGNAPWPIGVTMVGIHARTGREKIFSKHVAHVLNDETQRKYIQGLKRLMTICQKHFPTDPSKCVEYNAL 342
BLAST of EY688686 vs. ExPASy Swiss-Prot
Match: PRP18_XENLA (Pre-mRNA-splicing factor 18 OS=Xenopus laevis GN=prpf18 PE=2 SV=1) HSP 1 Score: 169.088 bits (427), Expect = 2.866e-41 Identity = 83/163 (50.92%), Postives = 113/163 (69.33%), Query Frame = 2 Query: 122 DELCEEDKILVFFKRLLNEWNQELNEMPEAEKRTAKGKSMVATFKQCARYLNPLFKFCRKKVLPDDIRQALMLMVNCCMKRDYLAAMDHYIRLAIGNAPWPIGVTMVGIHERSAREKIYTNSVAHIMNDETTRKYLQSVKRLMTFCQRRYPTMPSKAVEFNSL 610 D+ + D I K LL W +ELN + KR+ GK AT KQ YL PLF+ RKK LP DI++++ ++ ++R+Y+ A D Y+++AIGNAPWPIGVTMVGIH R+ REKI++ VAH++NDET RKY+Q +KRLMT CQ+ + T PSK VE+N+L Sbjct: 180 DDNKDMDTINKVLKFLLGVWAKELNAREDYVKRSVHGKLASATQKQTESYLKPLFRKLRKKNLPADIKESITDIIKFMLQREYVKANDAYLQMAIGNAPWPIGVTMVGIHARTGREKIFSKHVAHVLNDETQRKYIQGLKRLMTICQKYFSTDPSKCVEYNAL 342
BLAST of EY688686 vs. ExPASy Swiss-Prot
Match: PRP18_SCHPO (Pre-mRNA-splicing factor 18 OS=Schizosaccharomyces pombe GN=prp18 PE=2 SV=1) HSP 1 Score: 106.686 bits (265), Expect = 1.747e-22 Identity = 52/147 (35.37%), Postives = 88/147 (59.86%), Query Frame = 2 Query: 143 KILVFFKRLLNEWNQELNEMPEAEKRTAKGKSMVATFKQCARYLNPLFKFCRKKVLPDDIRQALMLMVNCCMKRDYLAAMDHYIRLAIGNAPWPIGVTMVGIHERSAREKIYTNSVAHIMNDETTRKYLQSVKRLMTFCQRRYPTMP 583 +++ F + + W+ L+ +++ + + F+Q + L+ L + + L DDI +++ + C K +++ A D Y+RL IGNAPWPIGVTMVGIHERSA +++ N ++I+ DE RK LQ++KR +TF +R +P Sbjct: 193 QVVAFLQHGIRIWDNFLSSKSINSFESSESQMQLKIFRQAKQDLDVLIQLIVDEALNDDIFKSIAEICYRCQKHEFVKANDMYLRLTIGNAPWPIGVTMVGIHERSAHQRLQANPSSNILKDEKKRKCLQALKRFITFQERESSNLP 339
BLAST of EY688686 vs. ExPASy Swiss-Prot
Match: PRP18_YEAST (Pre-mRNA-splicing factor 18 OS=Saccharomyces cerevisiae GN=PRP18 PE=1 SV=3) HSP 1 Score: 71.633 bits (174), Expect = 6.228e-12 Identity = 38/93 (40.86%), Postives = 57/93 (61.29%), Query Frame = 2 Query: 281 LFKFCRKKVLPDDIRQALMLMVNCCMKRDYLAAMDHYIRLAIGNAPWPIGVTMVGIHERSAREKIY-TNSVAHIMNDETTRKYLQSVKRLMTF 556 L + R ++ PD + ++ + ++ A+ Y++L+IGN WPIGVT VGIH RSA KI + A+IM DE TR ++ S+KRL+TF Sbjct: 147 LLQLRRNQLAPDLLISLATVLYHLQQPKEINLAVQSYMKLSIGNVAWPIGVTSVGIHARSAHSKIQGGRNAANIMIDERTRLWITSIKRLITF 239 The following BLAST results are available for this feature:
BLAST of EY688686 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 9
Properties
Sequences
The
following sequences are available for this feature:
EST sequence >EY688686 ID=EY688686; Name=EY688686; organism=Citrus sinensis; type=EST; length=857bpback to top |