EY688686

Overview
NameEY688686
Unique NameEY688686
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length857
Libraries
Library NameType
Sweet orange bark, greenhouse plantcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY688686 vs. ExPASy Swiss-Prot
Match: PRP18_RAT (Pre-mRNA-splicing factor 18 OS=Rattus norvegicus GN=Prpf18 PE=2 SV=1)

HSP 1 Score: 175.252 bits (443), Expect = 4.000e-43
Identity = 84/163 (51.53%), Postives = 116/163 (71.17%), Query Frame = 2
Query:  122 DELCEEDKILVFFKRLLNEWNQELNEMPEAEKRTAKGKSMVATFKQCARYLNPLFKFCRKKVLPDDIRQALMLMVNCCMKRDYLAAMDHYIRLAIGNAPWPIGVTMVGIHERSAREKIYTNSVAHIMNDETTRKYLQSVKRLMTFCQRRYPTMPSKAVEFNSL 610
            D+  + D I  F K LL  W +ELN   +  KR+ +GK   AT KQ   YL PLF+  RK+ LP DI++++  ++   ++R+Y+ A D Y+++AIGNAPWPIGVTMVGIH R+ REKI++  VAH++NDET RKY+Q +KRLMT CQ+ +PT PSK VE+N+L
Sbjct:  180 DDHKDMDIITKFLKFLLGVWAKELNSREDYVKRSVQGKLNSATQKQTESYLRPLFRKLRKRNLPADIKESITDIIKFMLQREYVKANDAYLQMAIGNAPWPIGVTMVGIHARTGREKIFSKHVAHVLNDETQRKYIQGLKRLMTICQKHFPTDPSKCVEYNAL 342          
BLAST of EY688686 vs. ExPASy Swiss-Prot
Match: PRP18_PONAB (Pre-mRNA-splicing factor 18 OS=Pongo abelii GN=PRPF18 PE=2 SV=1)

HSP 1 Score: 174.866 bits (442), Expect = 5.224e-43
Identity = 84/163 (51.53%), Postives = 116/163 (71.17%), Query Frame = 2
Query:  122 DELCEEDKILVFFKRLLNEWNQELNEMPEAEKRTAKGKSMVATFKQCARYLNPLFKFCRKKVLPDDIRQALMLMVNCCMKRDYLAAMDHYIRLAIGNAPWPIGVTMVGIHERSAREKIYTNSVAHIMNDETTRKYLQSVKRLMTFCQRRYPTMPSKAVEFNSL 610
            D+  + D I  F K LL  W +ELN   +  KR+ +GK   AT KQ   YL PLF+  RK+ LP DI++++  ++   ++R+Y+ A D Y+++AIGNAPWPIGVTMVGIH R+ REKI++  VAH++NDET RKY+Q +KRLMT CQ+ +PT PSK VE+N+L
Sbjct:  180 DDHKDMDIITKFLKFLLGVWAKELNAREDYVKRSVQGKLNSATQKQTESYLRPLFRKLRKRNLPADIKESITDIIKFMLQREYVKANDAYLQMAIGNAPWPIGVTMVGIHARTGREKIFSKHVAHVLNDETQRKYIQGLKRLMTICQKHFPTDPSKCVEYNAL 342          
BLAST of EY688686 vs. ExPASy Swiss-Prot
Match: PRP18_MOUSE (Pre-mRNA-splicing factor 18 OS=Mus musculus GN=Prpf18 PE=1 SV=1)

HSP 1 Score: 174.866 bits (442), Expect = 5.224e-43
Identity = 84/163 (51.53%), Postives = 116/163 (71.17%), Query Frame = 2
Query:  122 DELCEEDKILVFFKRLLNEWNQELNEMPEAEKRTAKGKSMVATFKQCARYLNPLFKFCRKKVLPDDIRQALMLMVNCCMKRDYLAAMDHYIRLAIGNAPWPIGVTMVGIHERSAREKIYTNSVAHIMNDETTRKYLQSVKRLMTFCQRRYPTMPSKAVEFNSL 610
            D+  + D I  F K LL  W +ELN   +  KR+ +GK   AT KQ   YL PLF+  RK+ LP DI++++  ++   ++R+Y+ A D Y+++AIGNAPWPIGVTMVGIH R+ REKI++  VAH++NDET RKY+Q +KRLMT CQ+ +PT PSK VE+N+L
Sbjct:  180 DDHKDMDIITKFLKFLLGVWAKELNAREDYVKRSVQGKLNSATQKQTESYLRPLFRKLRKRNLPADIKESITDIIKFMLQREYVKANDAYLQMAIGNAPWPIGVTMVGIHARTGREKIFSKHVAHVLNDETQRKYIQGLKRLMTICQKHFPTDPSKCVEYNAL 342          
BLAST of EY688686 vs. ExPASy Swiss-Prot
Match: PRP18_HUMAN (Pre-mRNA-splicing factor 18 OS=Homo sapiens GN=PRPF18 PE=1 SV=1)

HSP 1 Score: 174.866 bits (442), Expect = 5.224e-43
Identity = 84/163 (51.53%), Postives = 116/163 (71.17%), Query Frame = 2
Query:  122 DELCEEDKILVFFKRLLNEWNQELNEMPEAEKRTAKGKSMVATFKQCARYLNPLFKFCRKKVLPDDIRQALMLMVNCCMKRDYLAAMDHYIRLAIGNAPWPIGVTMVGIHERSAREKIYTNSVAHIMNDETTRKYLQSVKRLMTFCQRRYPTMPSKAVEFNSL 610
            D+  + D I  F K LL  W +ELN   +  KR+ +GK   AT KQ   YL PLF+  RK+ LP DI++++  ++   ++R+Y+ A D Y+++AIGNAPWPIGVTMVGIH R+ REKI++  VAH++NDET RKY+Q +KRLMT CQ+ +PT PSK VE+N+L
Sbjct:  180 DDHKDMDIITKFLKFLLGVWAKELNAREDYVKRSVQGKLNSATQKQTESYLRPLFRKLRKRNLPADIKESITDIIKFMLQREYVKANDAYLQMAIGNAPWPIGVTMVGIHARTGREKIFSKHVAHVLNDETQRKYIQGLKRLMTICQKHFPTDPSKCVEYNAL 342          
BLAST of EY688686 vs. ExPASy Swiss-Prot
Match: PRP18_BOVIN (Pre-mRNA-splicing factor 18 OS=Bos taurus GN=PRPF18 PE=2 SV=1)

HSP 1 Score: 174.866 bits (442), Expect = 5.224e-43
Identity = 84/163 (51.53%), Postives = 116/163 (71.17%), Query Frame = 2
Query:  122 DELCEEDKILVFFKRLLNEWNQELNEMPEAEKRTAKGKSMVATFKQCARYLNPLFKFCRKKVLPDDIRQALMLMVNCCMKRDYLAAMDHYIRLAIGNAPWPIGVTMVGIHERSAREKIYTNSVAHIMNDETTRKYLQSVKRLMTFCQRRYPTMPSKAVEFNSL 610
            D+  + D I  F K LL  W +ELN   +  KR+ +GK   AT KQ   YL PLF+  RK+ LP DI++++  ++   ++R+Y+ A D Y+++AIGNAPWPIGVTMVGIH R+ REKI++  VAH++NDET RKY+Q +KRLMT CQ+ +PT PSK VE+N+L
Sbjct:  180 DDHKDMDIITKFLKFLLGVWAKELNAREDYVKRSVQGKLNSATQKQTESYLRPLFRKLRKRNLPADIKESITDIIKFMLQREYVKANDAYLQMAIGNAPWPIGVTMVGIHARTGREKIFSKHVAHVLNDETQRKYIQGLKRLMTICQKHFPTDPSKCVEYNAL 342          
BLAST of EY688686 vs. ExPASy Swiss-Prot
Match: PRP18_DANRE (Pre-mRNA-splicing factor 18 OS=Danio rerio GN=prpf18 PE=2 SV=1)

HSP 1 Score: 171.4 bits (433), Expect = 5.776e-42
Identity = 82/165 (49.70%), Postives = 117/165 (70.91%), Query Frame = 2
Query:  116 NFDELCEEDKILVFFKRLLNEWNQELNEMPEAEKRTAKGKSMVATFKQCARYLNPLFKFCRKKVLPDDIRQALMLMVNCCMKRDYLAAMDHYIRLAIGNAPWPIGVTMVGIHERSAREKIYTNSVAHIMNDETTRKYLQSVKRLMTFCQRRYPTMPSKAVEFNSL 610
            N +++ + D I    + LL  W ++LN   +  KR+ +GK   AT KQ   YL PLF+  RKK LP DI++++  ++   ++R+Y+ A D Y+++AIGNAPWPIGVTMVGIH R+ REKI++  VAH++NDET RKY+Q +KRLMT CQ+ +PT PSK VE+N+L
Sbjct:  178 NGNDVRDMDIINKVLRFLLGVWAKDLNSREDHIKRSVQGKLASATQKQTESYLEPLFRKLRKKNLPADIKESITDIIKFMLEREYVKANDAYLQMAIGNAPWPIGVTMVGIHARTGREKIFSKHVAHVLNDETQRKYIQGLKRLMTICQKHFPTDPSKCVEYNAL 342          
BLAST of EY688686 vs. ExPASy Swiss-Prot
Match: PRP18_XENLA (Pre-mRNA-splicing factor 18 OS=Xenopus laevis GN=prpf18 PE=2 SV=1)

HSP 1 Score: 169.088 bits (427), Expect = 2.866e-41
Identity = 83/163 (50.92%), Postives = 113/163 (69.33%), Query Frame = 2
Query:  122 DELCEEDKILVFFKRLLNEWNQELNEMPEAEKRTAKGKSMVATFKQCARYLNPLFKFCRKKVLPDDIRQALMLMVNCCMKRDYLAAMDHYIRLAIGNAPWPIGVTMVGIHERSAREKIYTNSVAHIMNDETTRKYLQSVKRLMTFCQRRYPTMPSKAVEFNSL 610
            D+  + D I    K LL  W +ELN   +  KR+  GK   AT KQ   YL PLF+  RKK LP DI++++  ++   ++R+Y+ A D Y+++AIGNAPWPIGVTMVGIH R+ REKI++  VAH++NDET RKY+Q +KRLMT CQ+ + T PSK VE+N+L
Sbjct:  180 DDNKDMDTINKVLKFLLGVWAKELNAREDYVKRSVHGKLASATQKQTESYLKPLFRKLRKKNLPADIKESITDIIKFMLQREYVKANDAYLQMAIGNAPWPIGVTMVGIHARTGREKIFSKHVAHVLNDETQRKYIQGLKRLMTICQKYFSTDPSKCVEYNAL 342          
BLAST of EY688686 vs. ExPASy Swiss-Prot
Match: PRP18_SCHPO (Pre-mRNA-splicing factor 18 OS=Schizosaccharomyces pombe GN=prp18 PE=2 SV=1)

HSP 1 Score: 106.686 bits (265), Expect = 1.747e-22
Identity = 52/147 (35.37%), Postives = 88/147 (59.86%), Query Frame = 2
Query:  143 KILVFFKRLLNEWNQELNEMPEAEKRTAKGKSMVATFKQCARYLNPLFKFCRKKVLPDDIRQALMLMVNCCMKRDYLAAMDHYIRLAIGNAPWPIGVTMVGIHERSAREKIYTNSVAHIMNDETTRKYLQSVKRLMTFCQRRYPTMP 583
            +++ F +  +  W+  L+        +++ +  +  F+Q  + L+ L +    + L DDI +++  +   C K +++ A D Y+RL IGNAPWPIGVTMVGIHERSA +++  N  ++I+ DE  RK LQ++KR +TF +R    +P
Sbjct:  193 QVVAFLQHGIRIWDNFLSSKSINSFESSESQMQLKIFRQAKQDLDVLIQLIVDEALNDDIFKSIAEICYRCQKHEFVKANDMYLRLTIGNAPWPIGVTMVGIHERSAHQRLQANPSSNILKDEKKRKCLQALKRFITFQERESSNLP 339          
BLAST of EY688686 vs. ExPASy Swiss-Prot
Match: PRP18_YEAST (Pre-mRNA-splicing factor 18 OS=Saccharomyces cerevisiae GN=PRP18 PE=1 SV=3)

HSP 1 Score: 71.633 bits (174), Expect = 6.228e-12
Identity = 38/93 (40.86%), Postives = 57/93 (61.29%), Query Frame = 2
Query:  281 LFKFCRKKVLPDDIRQALMLMVNCCMKRDYLAAMDHYIRLAIGNAPWPIGVTMVGIHERSAREKIY-TNSVAHIMNDETTRKYLQSVKRLMTF 556
            L +  R ++ PD +     ++ +    ++   A+  Y++L+IGN  WPIGVT VGIH RSA  KI    + A+IM DE TR ++ S+KRL+TF
Sbjct:  147 LLQLRRNQLAPDLLISLATVLYHLQQPKEINLAVQSYMKLSIGNVAWPIGVTSVGIHARSAHSKIQGGRNAANIMIDERTRLWITSIKRLITF 239          
The following BLAST results are available for this feature:
BLAST of EY688686 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 9
Match NameE-valueIdentityDescription
PRP18_RAT4.000e-4351.53Pre-mRNA-splicing factor 18 OS=Rattus norvegicus G... [more]
PRP18_PONAB5.224e-4351.53Pre-mRNA-splicing factor 18 OS=Pongo abelii GN=PRP... [more]
PRP18_MOUSE5.224e-4351.53Pre-mRNA-splicing factor 18 OS=Mus musculus GN=Prp... [more]
PRP18_HUMAN5.224e-4351.53Pre-mRNA-splicing factor 18 OS=Homo sapiens GN=PRP... [more]
PRP18_BOVIN5.224e-4351.53Pre-mRNA-splicing factor 18 OS=Bos taurus GN=PRPF1... [more]
PRP18_DANRE5.776e-4249.70Pre-mRNA-splicing factor 18 OS=Danio rerio GN=prpf... [more]
PRP18_XENLA2.866e-4150.92Pre-mRNA-splicing factor 18 OS=Xenopus laevis GN=p... [more]
PRP18_SCHPO1.747e-2235.37Pre-mRNA-splicing factor 18 OS=Schizosaccharomyces... [more]
PRP18_YEAST6.228e-1240.86Pre-mRNA-splicing factor 18 OS=Saccharomyces cerev... [more]
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Properties
Property NameValue
Genbank descriptionCS00-C2-003-091-C08-CT.F Sweet orange bark, greenhouse plant Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY688686 ID=EY688686; Name=EY688686; organism=Citrus sinensis; type=EST; length=857bp
TCGGGAAGAGGGCGGAGGAGATGATGGAGAAGGGGGCGGTGGAGATGAGG
AGCTGAGCGCCGATGGGGGGTCCAGTGGCGTTGATATGGATAAGGATTTG
AAGAGAATGAAGGCCAATTTTGATGAATTGTGTGAGGAAGATAAGATTCT
GGTTTTTTTTAAGAGGTTATTGAATGAATGGAATCAGGAATTGAATGAGA
TGCCGGAAGCTGAGAAAAGGACGGCAAAAGGGAAGTCTATGGTGGCTACT
TTTAAGCAGTGTGCAAGATACTTGAATCCGCTGTTCAAGTTTTGCAGGAA
GAAGGTTCTTCCTGATGACATTCGTCAAGCATTGATGTTGATGGTTAACT
GCTGCATGAAGCGAGACTACTTAGCTGCTATGGACCATTATATTAGGTTG
GCCATTGGTAATGCACCATGGCCTATTGGTGTCACTATGGTTGGTATCCA
TGAACGTTCAGCCCGTGAGAAGATTTATACCAACAGTGTGGCCCATATTA
TGAATGATGAGACGACTCGCAAGTACCTGCAATCAGTTAAGAGATTGATG
ACCTTTTGCCAACGACGCTATCCAACAATGCCCTCCAAAGCAGTTGAATT
CAACAGCCTGGCAAATGGCAGCGACTTACAGTCTCTACTAGCAGAAGAGA
CGATATCTGGTAGGAATCAATCCTCAGAGGAAAGGCTTCGGTTAATGCCT
GCCCCAAATAAAACTAGTTATCTTTTGGGTAAAACCGGCTCCTTAGGCCT
TCCTAATGCAATGGAATGGTTTTGAAATAAATGATGATTTTGCCTTTCTT
TTTTTTCCCTTGGCGCGCTACTATAGGCGAAAAAAGACGGCCTGCGGGAA
CATAAAA
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