EY688685

Overview
NameEY688685
Unique NameEY688685
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length187
Libraries
Library NameType
Sweet orange bark, greenhouse plantcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY688685 vs. ExPASy Swiss-Prot
Match: AROA_RHILW (3-phosphoshikimate 1-carboxyvinyltransferase OS=Rhizobium leguminosarum bv. trifolii (strain WSM2304) GN=aroA PE=3 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 2.534e-14
Identity = 35/53 (66.04%), Postives = 42/53 (79.25%), Query Frame = 1
Query:   28 VDLTLDCMRAFGAQVDIVDESTWRVAPTGYTAHDYLIEPDASAATYLWAAEVL 186
            +DLT   M+AFGA+V+     TWRV PTGY A D+++EPDASAATYLWAAEVL
Sbjct:  203 IDLTTAAMKAFGAKVEKTSPVTWRVEPTGYRAADFIVEPDASAATYLWAAEVL 255          
BLAST of EY688685 vs. ExPASy Swiss-Prot
Match: AROA_RHIEC (3-phosphoshikimate 1-carboxyvinyltransferase OS=Rhizobium etli (strain CFN 42 / ATCC 51251) GN=aroA PE=3 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 2.534e-14
Identity = 36/53 (67.92%), Postives = 42/53 (79.25%), Query Frame = 1
Query:   28 VDLTLDCMRAFGAQVDIVDESTWRVAPTGYTAHDYLIEPDASAATYLWAAEVL 186
            +DLT   M+AFGA+V+     TWRV PTGY A D++IEPDASAATYLWAAEVL
Sbjct:  203 IDLTTAAMKAFGAKVEKTSPVTWRVEPTGYRAADFVIEPDASAATYLWAAEVL 255          
BLAST of EY688685 vs. ExPASy Swiss-Prot
Match: AROA_RHIE6 (3-phosphoshikimate 1-carboxyvinyltransferase OS=Rhizobium etli (strain CIAT 652) GN=aroA PE=3 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 2.534e-14
Identity = 36/53 (67.92%), Postives = 42/53 (79.25%), Query Frame = 1
Query:   28 VDLTLDCMRAFGAQVDIVDESTWRVAPTGYTAHDYLIEPDASAATYLWAAEVL 186
            +DLT   M+AFGA+V+     TWRV PTGY A D++IEPDASAATYLWAAEVL
Sbjct:  203 IDLTTAAMKAFGARVEKTSPVTWRVEPTGYRAADFVIEPDASAATYLWAAEVL 255          
BLAST of EY688685 vs. ExPASy Swiss-Prot
Match: AROA_PSE14 (3-phosphoshikimate 1-carboxyvinyltransferase OS=Pseudomonas syringae pv. phaseolicola (strain 1448A / Race 6) GN=aroA PE=3 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 1.258e-13
Identity = 35/60 (58.33%), Postives = 44/60 (73.33%), Query Frame = 1
Query:    7 QYGPDSRVDLTLDCMRAFGAQVDIVDESTWRVAPTGYTAHDYLIEPDASAATYLWAAEVL 186
            + G    VDLTL  M+AFGA+V  + E+ W+V+ TGY A D+ IEPDASAATYLWAA+ L
Sbjct:  196 EIGARGYVDLTLAAMQAFGAEVQAIGETAWKVSATGYRATDFHIEPDASAATYLWAAQAL 255          
BLAST of EY688685 vs. ExPASy Swiss-Prot
Match: AROA_PSEU2 (3-phosphoshikimate 1-carboxyvinyltransferase OS=Pseudomonas syringae pv. syringae (strain B728a) GN=aroA PE=3 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 2.145e-13
Identity = 34/60 (56.67%), Postives = 44/60 (73.33%), Query Frame = 1
Query:    7 QYGPDSRVDLTLDCMRAFGAQVDIVDESTWRVAPTGYTAHDYLIEPDASAATYLWAAEVL 186
            + G    +DLTL  MRAFGA+V  + ++ W+V+ TGY A D+ IEPDASAATYLWAA+ L
Sbjct:  196 EIGARGYLDLTLAAMRAFGAEVQAIGDAAWKVSATGYRATDFHIEPDASAATYLWAAQAL 255          
BLAST of EY688685 vs. ExPASy Swiss-Prot
Match: AROA_PSESM (3-phosphoshikimate 1-carboxyvinyltransferase OS=Pseudomonas syringae pv. tomato GN=aroA PE=3 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 3.659e-13
Identity = 34/60 (56.67%), Postives = 44/60 (73.33%), Query Frame = 1
Query:    7 QYGPDSRVDLTLDCMRAFGAQVDIVDESTWRVAPTGYTAHDYLIEPDASAATYLWAAEVL 186
            + G    VDLTL  M+AFGA+V  + ++ W+V+ TGY A D+ IEPDASAATYLWAA+ L
Sbjct:  196 EIGARGYVDLTLAAMQAFGAEVQAIGDAAWKVSATGYHATDFHIEPDASAATYLWAAQAL 255          
The following BLAST results are available for this feature:
BLAST of EY688685 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 6
Match NameE-valueIdentityDescription
AROA_RHILW2.534e-1466.043-phosphoshikimate 1-carboxyvinyltransferase OS=Rh... [more]
AROA_RHIEC2.534e-1467.923-phosphoshikimate 1-carboxyvinyltransferase OS=Rh... [more]
AROA_RHIE62.534e-1467.923-phosphoshikimate 1-carboxyvinyltransferase OS=Rh... [more]
AROA_PSE141.258e-1358.333-phosphoshikimate 1-carboxyvinyltransferase OS=Ps... [more]
AROA_PSEU22.145e-1356.673-phosphoshikimate 1-carboxyvinyltransferase OS=Ps... [more]
AROA_PSESM3.659e-1356.673-phosphoshikimate 1-carboxyvinyltransferase OS=Ps... [more]
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Properties
Property NameValue
Genbank descriptionCS00-C2-003-091-C06-CT.F Sweet orange bark, greenhouse plant Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY688685 ID=EY688685; Name=EY688685; organism=Citrus sinensis; type=EST; length=187bp
GAGCTGCAGTACGGTCCGGATTCCCGGGTCGACCTGACTCTGGACTGCAT
GCGCGCCTTCGGTGCCCAGGTGGACATCGTTGATGAAAGCACCTGGCGCG
TGGCCCCGACCGGCTACACCGCCCACGATTACCTGATCGAACCTGACGCT
TCCGCCGCCACCTACTTGTGGGCTGCCGAAGTGTTGA
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