EY688661

Overview
NameEY688661
Unique NameEY688661
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length829
Libraries
Library NameType
Sweet orange bark, greenhouse plantcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
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BLAST of EY688661 vs. ExPASy Swiss-Prot
Match: GIGAN_ARATH (Protein GIGANTEA OS=Arabidopsis thaliana GN=GI PE=1 SV=2)

HSP 1 Score: 243.047 bits (619), Expect = 1.494e-63
Identity = 122/166 (73.49%), Postives = 138/166 (83.13%), Query Frame = 2 
Query:    2 SLVILASASDLLLRATDGMLVDGEACTLPQLELLEATARAIQPILRWGKSGLAIADGLSNLLKCRLPATIRCLSHPSAHVRALSTSVLRDFLHTSSF----KSNIEQVERNGIHGSSLHYFNIDAINWQADIEKCLTWEAHSRLATGMPIQFLDIAAKELGCTISI 487
            SLVILASASDLLLRATDGMLVDGEACTLPQLELLEATARAIQP+L WG SGLA+ DGLSNLLKCRLPATIRCLSHPSAHVRALSTSVLRD ++ SS        +   E+NG++  S  +FN  +I+W+ADI+ CL WEAHS L+T MP QFLD AA+ELGCTIS+
Sbjct: 1006 SLVILASASDLLLRATDGMLVDGEACTLPQLELLEATARAIQPVLAWGPSGLAVVDGLSNLLKCRLPATIRCLSHPSAHVRALSTSVLRDIMNQSSIPIKVTPKLPTTEKNGMNSPSYRFFNAASIDWKADIQNCLNWEAHSLLSTTMPTQFLDTAARELGCTISL 1171
[Close]
BLAST of EY688661 vs. ExPASy Swiss-Prot
Match: GIGAN_ORYSJ (Protein GIGANTEA OS=Oryza sativa subsp. japonica GN=GI PE=2 SV=2)

HSP 1 Score: 216.853 bits (551), Expect = 1.147e-55
Identity = 109/163 (66.87%), Postives = 127/163 (77.91%), Query Frame = 2 
Query:    2 SLVILASASDLLLRATDGMLVDGEACTLPQLELLEATARAIQPILRWGKSGLAIADGLSNLLKCRLPATIRCLSHPSAHVRALSTSVLRDFLHTSSFKSN--IEQVERNGIHGSSLHYFNIDAINWQADIEKCLTWEAHSRLATGMPIQFLDIAAKELGCTIS 484
            +LVILASASDLLLRATDGMLVDGEACTLPQLELLE TARA+  I+ WG SG+++ADGLSNLLKCRL  TIRCLSHPSAHVRALS SVLRD L++    S+  I+   RNGI   +        INWQAD+E+C+ WEAHSR ATG+ + FL  AAKELGC ++
Sbjct:  997 ALVILASASDLLLRATDGMLVDGEACTLPQLELLEVTARAVHLIVEWGDSGVSVADGLSNLLKCRLSTTIRCLSHPSAHVRALSMSVLRDILNSGQINSSKLIQGEHRNGIQSPTYQCLAASIINWQADVERCIEWEAHSRRATGLTLAFLTAAAKELGCPLT 1159
The following BLAST results are available for this feature:
BLAST of EY688661 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
GIGAN_ARATH1.494e-6373.49Protein GIGANTEA OS=Arabidopsis thaliana GN=GI PE=... [more]
GIGAN_ORYSJ1.147e-5566.87Protein GIGANTEA OS=Oryza sativa subsp. japonica G... [more]
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Properties
Property NameValue
Genbank descriptionCS00-C2-003-090-H09-CT.F Sweet orange bark, greenhouse plant Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY688661 ID=EY688661; Name=EY688661; organism=Citrus sinensis; type=EST; length=829bp
GTCACTGGTAATATTGGCAAGCGCATCAGATCTGCTTCTACGTGCCACAG
ACGGGATGCTTGTTGATGGTGAAGCTTGCACACTGCCACAACTTGAGTTA
CTGGAAGCAACAGCTAGAGCAATTCAGCCCATCCTGCGGTGGGGAAAGTC
TGGATTAGCAATTGCAGATGGTCTTTCAAACCTTTTAAAGTGTCGTCTAC
CTGCAACGATCCGATGCCTTTCTCATCCAAGTGCCCATGTCCGCGCACTG
AGCACTTCAGTTCTTCGTGACTTTTTACATACCAGTTCATTCAAATCAAA
TATTGAGCAAGTAGAGAGAAATGGCATCCATGGGTCTTCCTTACACTACT
TCAATATTGATGCAATTAACTGGCAAGCTGACATCGAAAAATGCTTAACT
TGGGAAGCTCATAGCCGACTTGCAACAGGAATGCCGATTCAGTTTCTTGA
TATCGCTGCCAAGGAATTAGGTTGTACAATATCTATATGAAATAAAATAA
CCTACAGCAGTCATTTGAGGTTTGTGATTATAATTTATTTTTCCAAGTGA
GATTTATGGATGCTAATAAACCAGATCAATTGCTTTGACAAAAATATTTT
GGTTTTTGATCTAGAGGTGCACCAACAAAACAACAACGGGCGACCGCTCC
CAAGGACACACCTAACCGACCAGCGCCAGCAAAATACAAAGATCCCGTTA
TTTATTTTCGCGAAGATACAACCAGTGCCCAAAAAATGAACAGGACCAAC
GAGAAGCGACCGCCTATAACAGACACAAACGACCCGCCAGTTAGGAGAAA
GACAACTTGATACAAGCATATGAATACAT
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