EY688647

Overview
NameEY688647
Unique NameEY688647
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length884
Libraries
Library NameType
Sweet orange bark, greenhouse plantcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
EY688647_ssr677 microsatellite EY688647_ssr677:677..686. BLAST: Citrus ESTs to Prunus persica proteins V1
EY688647_ssr553 microsatellite EY688647_ssr553:553..564. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig5183 contig Csv1_Contig5183:445..1327. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
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BLAST of EY688647 vs. ExPASy Swiss-Prot
Match: U308_ARATH (UPF0308 protein At2g37240, chloroplastic OS=Arabidopsis thaliana GN=At2g37240 PE=2 SV=2)

HSP 1 Score: 187.578 bits (475), Expect = 8.203e-47
Identity = 85/107 (79.44%), Postives = 97/107 (90.65%), Query Frame = 1 
Query:    4 TFSEQTQFKGEVYADPNHSSSEALSFVSGVLVTFTPKAGLKIIQSYMEGYRQDWKLSFERDTVSRGGWQQGGIIVAGPGKSNISYIHRDKEAGDDPDIQDILKACCS 324
            TF EQT+FKGEVYADPNH+S EAL FVSGV VTFTPKA +KI++SYMEGYRQDWKLSF +DTV RGGWQQGGI+VAGPGK NISYI +DKEAGDDP +++ILKACC+
Sbjct:  142 TFVEQTKFKGEVYADPNHASYEALEFVSGVSVTFTPKAAMKILESYMEGYRQDWKLSFMKDTVERGGWQQGGILVAGPGKDNISYIRKDKEAGDDPPVEEILKACCA 248
The following BLAST results are available for this feature:
BLAST of EY688647 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
U308_ARATH8.203e-4779.44UPF0308 protein At2g37240, chloroplastic OS=Arabid... [more]
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Properties
Property NameValue
Genbank descriptionCS00-C2-003-090-G05-CT.F Sweet orange bark, greenhouse plant Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY688647 ID=EY688647; Name=EY688647; organism=Citrus sinensis; type=EST; length=884bp
AGGACTTTCTCTGAGCAAACACAATTCAAAGGAGAAGTTTATGCAGATCC
TAACCACTCATCTTCTGAGGCACTAAGCTTTGTTTCGGGGGTCTTAGTCA
CATTTACTCCCAAAGCAGGCCTTAAGATAATACAATCCTATATGGAGGGA
TATCGACAAGACTGGAAGCTTTCATTTGAAAGGGATACTGTGAGCCGAGG
TGGCTGGCAGCAAGGTGGAATTATAGTTGCAGGTCCCGGTAAAAGTAACA
TCTCATACATTCACAGGGATAAAGAAGCTGGGGATGATCCAGATATTCAG
GATATACTGAAAGCGTGTTGCTCATGAAGAATTGGGTGGTCCTTGATCAT
CTTTAATCCCATCATTGAGAATTACTCTCAGACAATTATCATATGATCTA
GGTGGCTGAGCGCGCCCGCCGACCCGCCGAACCACTAAATAAGAAAAAAA
CAAAAACCACGCGCCAACACAGCAAGAGACAAGAAGCCACAACGCGCACA
CCGCACAAGACGCAAGAGACAAAAAGAAAACGAACACAAAAACCACAACA
ACCAAACAAACAAAACAACAGCCAAGAAACACCAAAAGACCCACAAAAAA
AAAACGCACCGGACCACGAGTCCCGAAGAAGCCGCGAACAGCACCGCCGA
CCGCGGCCCCCCGCGGAAAAAGAGGCAGAGAGAGAGGGGCAGAAGGGACG
AAAAAAACAGGCACCAAGAATCCGACATCACCACAACGAACCGAAAGACG
ACACAACGAAAGGCGGCACAGCACGAACCAACACGCACGACACCGAAGAC
CAGACCCACGCCGCAAAAAAAAAAAAACAAACAAAAAAAAGAAAAAGAAA
AAAAGAAAAAAAAAAAAAAGAAAAACAAAACGAG
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