EY746559

Overview
NameEY746559
Unique NameEY746559
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length1043
Libraries
Library NameType
Sweet orange flower, greenhouse plantcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY746559 vs. ExPASy Swiss-Prot
Match: RSP40_ARATH (Arginine/serine-rich-splicing factor RSP40 OS=Arabidopsis thaliana GN=RSP40 PE=1 SV=2)

HSP 1 Score: 257.684 bits (657), Expect = 8.233e-68
Identity = 131/196 (66.84%), Postives = 154/196 (78.57%), Query Frame = 1
Query:   97 MRPIFCGNFEYDARQSDLERLFRRYGKVDRVDMKSGFAFIYMDDERDAEDAIRGLDRTEFGRKGRRLRVEWTKHEXXXXXXXXXXXXXXXXTNTRPSKTLFVINFDPYHTRTRDLERHFEPYGKIISVRIRRNFAFVQYEVQEDATRALDATNMSKLTDRVISVGILQFVMNDD--RRNGHRPD*KIVIGPPKRGR 678
            M+P+FCGNFEYDAR+ DLERLFR+YGKV+RVDMK+GFAF+YM+DERDAEDAIR LDR EFGRKGRRLRVEWTK E                ++ RPSKTLFVINFD  +TRTRDLE+HFEPYGKI++VRIRRNFAF+QYE QEDATRALDA+N SKL D+VISV   ++ + DD  R NGH P+ +    P +R R
Sbjct:    1 MKPVFCGNFEYDAREGDLERLFRKYGKVERVDMKAGFAFVYMEDERDAEDAIRALDRFEFGRKGRRLRVEWTKSE-RGGDKRSGGGSRRSSSSMRPSKTLFVINFDADNTRTRDLEKHFEPYGKIVNVRIRRNFAFIQYEAQEDATRALDASNNSKLMDKVISV---EYAVKDDDARGNGHSPERRRDRSPERRRR 192          
BLAST of EY746559 vs. ExPASy Swiss-Prot
Match: RSP41_ARATH (Arginine/serine-rich-splicing factor RSP41 OS=Arabidopsis thaliana GN=RSP41 PE=1 SV=2)

HSP 1 Score: 256.529 bits (654), Expect = 1.834e-67
Identity = 130/196 (66.33%), Postives = 154/196 (78.57%), Query Frame = 1
Query:   97 MRPIFCGNFEYDARQSDLERLFRRYGKVDRVDMKSGFAFIYMDDERDAEDAIRGLDRTEFGRKGRRLRVEWTKHEXXXXXXXXXXXXXXXXTNTRPSKTLFVINFDPYHTRTRDLERHFEPYGKIISVRIRRNFAFVQYEVQEDATRALDATNMSKLTDRVISVGILQFVMNDD--RRNGHRPD*KIVIGPPKRGR 678
            M+P+FCGNFEYDAR+SDLERLFR+YGKV+RVDMK+GFAF+YM+DERDAEDAIR LDR E+GR GRRLRVEWTK++                +  RPSKTLFVINFD  +TRTRDLERHFEPYGKI++VRIRRNFAF+QYE QEDATRALDATN SKL D+VISV   ++ + DD  R NG+ P+ +    P +R R
Sbjct:    1 MKPVFCGNFEYDARESDLERLFRKYGKVERVDMKAGFAFVYMEDERDAEDAIRALDRFEYGRTGRRLRVEWTKND--RGGAGRSGGSRRSSSGLRPSKTLFVINFDAQNTRTRDLERHFEPYGKIVNVRIRRNFAFIQYEAQEDATRALDATNSSKLMDKVISV---EYAVKDDDSRGNGYSPERRRDRSPDRRRR 191          
BLAST of EY746559 vs. ExPASy Swiss-Prot
Match: RSP31_ARATH (Arginine/serine-rich-splicing factor RSP31 OS=Arabidopsis thaliana GN=RSP31 PE=1 SV=2)

HSP 1 Score: 215.698 bits (548), Expect = 3.588e-55
Identity = 109/184 (59.24%), Postives = 134/184 (72.83%), Query Frame = 1
Query:   97 MRPIFCGNFEYDARQSDLERLFRRYGKVDRVDMKSGFAFIYMDDERDAEDAIRGLDRTEFGRKGRRLRVEWTKHEXXXXXXXXXXXXXXXXTNTRPSKTLFVINFDPYHTRTRDLERHFEPYGKIISVRIRRNFAFVQYEVQEDATRALDATNMSKLTDRVISVGILQFVMND----DRRNGHR 636
            MRP+F GNFEY+ RQSDLERLF +YG+VDRVDMKSG+AF+Y +DERDAEDAIR LD   FG + RRL VEW K E                +N +P+KTLFVINFDP  T+  D+E+HFEPYGK+ +VRIRRNF+FVQ+E QEDAT+AL+AT  SK+ DRV+SV   ++ + D    D RNG R
Sbjct:    1 MRPVFVGNFEYETRQSDLERLFDKYGRVDRVDMKSGYAFVYFEDERDAEDAIRKLDNFPFGYEKRRLSVEWAKGE-----RGRPRGDAKAPSNLKPTKTLFVINFDPIRTKEHDIEKHFEPYGKVTNVRIRRNFSFVQFETQEDATKALEATQRSKILDRVVSV---EYALKDDDERDDRNGGR 176          
BLAST of EY746559 vs. ExPASy Swiss-Prot
Match: RSP3_CAEEL (Probable splicing factor, arginine/serine-rich 3 OS=Caenorhabditis elegans GN=rsp-3 PE=1 SV=2)

HSP 1 Score: 69.3218 bits (168), Expect = 4.153e-11
Identity = 34/74 (45.95%), Postives = 50/74 (67.57%), Query Frame = 1
Query:  106 IFCGNFEYDARQSDLERLFRRYGKVDRVDMKSG----FAFIYMDDERDAEDAIRGLDRTEFGRKGRRLRVEWTK 315
            ++ GN   D R+ ++E +F +YG++  VD+KSG    FAF+  +D RDAEDA+R  D  EF   GRR+RVE+T+
Sbjct:   11 VYVGNLPGDVREKEVEDIFHKYGRIKYVDIKSGRGPAFAFVEFEDHRDAEDAVRARDGYEF--DGRRIRVEFTR 82          
BLAST of EY746559 vs. ExPASy Swiss-Prot
Match: RBM4_MACFA (RNA-binding protein 4 OS=Macaca fascicularis GN=RBM4 PE=2 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 4.153e-11
Identity = 46/149 (30.87%), Postives = 73/149 (48.99%), Query Frame = 1
Query:   97 MRPIFCGNFEYDARQSDLERLFRRYGKVDRVDMKSGFAFIYMDDERDAEDAIRGLDRTEFGRKGRRLRVEWTKHEXXXXXXXXXXXXXXXXTNTRPSKTLFVINFDPYHTRTRDLERHFEPYGKIISVRIRRNFAFVQYEVQEDATRAL 543
            M  +F GN   +A + ++  LF +YGKV   D+   + F++++D+  AEDAIR L    +   G  + VE +K++                  ++ S  L V N  P  T  ++L   FE YG +I   I +++AFV  E  EDA  A+
Sbjct:    1 MVKLFIGNLPREATEQEIRSLFEQYGKVLECDIIKNYGFVHIEDKTAAEDAIRNLH--HYKLHGVNINVEASKNK------------------SKTSTKLHVGNISPTCT-NKELRAKFEEYGPVIECDIVKDYAFVHMERAEDAVEAI 128          
BLAST of EY746559 vs. ExPASy Swiss-Prot
Match: RBM4_HUMAN (RNA-binding protein 4 OS=Homo sapiens GN=RBM4 PE=1 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 4.153e-11
Identity = 46/149 (30.87%), Postives = 73/149 (48.99%), Query Frame = 1
Query:   97 MRPIFCGNFEYDARQSDLERLFRRYGKVDRVDMKSGFAFIYMDDERDAEDAIRGLDRTEFGRKGRRLRVEWTKHEXXXXXXXXXXXXXXXXTNTRPSKTLFVINFDPYHTRTRDLERHFEPYGKIISVRIRRNFAFVQYEVQEDATRAL 543
            M  +F GN   +A + ++  LF +YGKV   D+   + F++++D+  AEDAIR L    +   G  + VE +K++                  ++ S  L V N  P  T  ++L   FE YG +I   I +++AFV  E  EDA  A+
Sbjct:    1 MVKLFIGNLPREATEQEIRSLFEQYGKVLECDIIKNYGFVHIEDKTAAEDAIRNLH--HYKLHGVNINVEASKNK------------------SKTSTKLHVGNISPTCT-NKELRAKFEEYGPVIECDIVKDYAFVHMERAEDAVEAI 128          
BLAST of EY746559 vs. ExPASy Swiss-Prot
Match: RBM4_BOVIN (RNA-binding protein 4 OS=Bos taurus GN=RBM4 PE=2 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 4.153e-11
Identity = 46/149 (30.87%), Postives = 73/149 (48.99%), Query Frame = 1
Query:   97 MRPIFCGNFEYDARQSDLERLFRRYGKVDRVDMKSGFAFIYMDDERDAEDAIRGLDRTEFGRKGRRLRVEWTKHEXXXXXXXXXXXXXXXXTNTRPSKTLFVINFDPYHTRTRDLERHFEPYGKIISVRIRRNFAFVQYEVQEDATRAL 543
            M  +F GN   +A + ++  LF +YGKV   D+   + F++++D+  AEDAIR L    +   G  + VE +K++                  ++ S  L V N  P  T  ++L   FE YG +I   I +++AFV  E  EDA  A+
Sbjct:    1 MVKLFIGNLPREATEQEIRSLFEQYGKVLECDIIKNYGFVHIEDKTAAEDAIRNLH--HYKLHGVNINVEASKNK------------------SKTSTKLHVGNISPTCT-NKELRAKFEEYGPVIECDIVKDYAFVHMERAEDAVEAI 128          
BLAST of EY746559 vs. ExPASy Swiss-Prot
Match: RBM4_RABIT (RNA-binding protein 4 OS=Oryctolagus cuniculus GN=RBM4 PE=2 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 5.424e-11
Identity = 46/149 (30.87%), Postives = 73/149 (48.99%), Query Frame = 1
Query:   97 MRPIFCGNFEYDARQSDLERLFRRYGKVDRVDMKSGFAFIYMDDERDAEDAIRGLDRTEFGRKGRRLRVEWTKHEXXXXXXXXXXXXXXXXTNTRPSKTLFVINFDPYHTRTRDLERHFEPYGKIISVRIRRNFAFVQYEVQEDATRAL 543
            M  +F GN   +A + ++  LF +YGKV   D+   + F++++D+  AEDAIR L    +   G  + VE +K++                  ++ S  L V N  P  T  ++L   FE YG +I   I +++AFV  E  EDA  A+
Sbjct:    1 MVKLFIGNLPREATEQEIRSLFEQYGKVLECDIIKNYGFVHIEDKTAAEDAIRNLH--HYKLHGVNINVEASKNK------------------SKASTKLHVGNISPTCT-NQELRAKFEEYGPVIECDIVKDYAFVHMERAEDAVEAI 128          
BLAST of EY746559 vs. ExPASy Swiss-Prot
Match: RBM4_MOUSE (RNA-binding protein 4 OS=Mus musculus GN=Rbm4 PE=2 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 5.424e-11
Identity = 46/149 (30.87%), Postives = 73/149 (48.99%), Query Frame = 1
Query:   97 MRPIFCGNFEYDARQSDLERLFRRYGKVDRVDMKSGFAFIYMDDERDAEDAIRGLDRTEFGRKGRRLRVEWTKHEXXXXXXXXXXXXXXXXTNTRPSKTLFVINFDPYHTRTRDLERHFEPYGKIISVRIRRNFAFVQYEVQEDATRAL 543
            M  +F GN   +A + ++  LF +YGKV   D+   + F++++D+  AEDAIR L    +   G  + VE +K++                  ++ S  L V N  P  T  ++L   FE YG +I   I +++AFV  E  EDA  A+
Sbjct:    1 MVKLFIGNLPREATEQEIRSLFEQYGKVLECDIIKNYGFVHIEDKTAAEDAIRNLH--HYKLHGVNINVEASKNK------------------SKASTKLHVGNISPTCT-NQELRAKFEEYGPVIECDIVKDYAFVHMERAEDAVEAI 128          
BLAST of EY746559 vs. ExPASy Swiss-Prot
Match: RBM4B_RAT (RNA-binding protein 4B OS=Rattus norvegicus GN=Rbm4b PE=2 SV=2)

HSP 1 Score: 68.9366 bits (167), Expect = 5.424e-11
Identity = 46/149 (30.87%), Postives = 73/149 (48.99%), Query Frame = 1
Query:   97 MRPIFCGNFEYDARQSDLERLFRRYGKVDRVDMKSGFAFIYMDDERDAEDAIRGLDRTEFGRKGRRLRVEWTKHEXXXXXXXXXXXXXXXXTNTRPSKTLFVINFDPYHTRTRDLERHFEPYGKIISVRIRRNFAFVQYEVQEDATRAL 543
            M  +F GN   +A + ++  LF +YGKV   D+   + F++++D+  AEDAIR L    +   G  + VE +K++                  ++ S  L V N  P  T  ++L   FE YG +I   I +++AFV  E  EDA  A+
Sbjct:    1 MVKLFIGNLPREATEQEIRSLFEQYGKVLECDIIKNYGFVHIEDKTAAEDAIRNLH--HYKLHGVNINVEASKNK------------------SKASTKLHVGNISPTCT-NQELRAKFEEYGPVIECDIVKDYAFVHMERAEDAVEAI 128          
The following BLAST results are available for this feature:
BLAST of EY746559 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 13
Match NameE-valueIdentityDescription
RSP40_ARATH8.233e-6866.84Arginine/serine-rich-splicing factor RSP40 OS=Arab... [more]
RSP41_ARATH1.834e-6766.33Arginine/serine-rich-splicing factor RSP41 OS=Arab... [more]
RSP31_ARATH3.588e-5559.24Arginine/serine-rich-splicing factor RSP31 OS=Arab... [more]
RSP3_CAEEL4.153e-1145.95Probable splicing factor, arginine/serine-rich 3 O... [more]
RBM4_MACFA4.153e-1130.87RNA-binding protein 4 OS=Macaca fascicularis GN=RB... [more]
RBM4_HUMAN4.153e-1130.87RNA-binding protein 4 OS=Homo sapiens GN=RBM4 PE=1... [more]
RBM4_BOVIN4.153e-1130.87RNA-binding protein 4 OS=Bos taurus GN=RBM4 PE=2 S... [more]
RBM4_RABIT5.424e-1130.87RNA-binding protein 4 OS=Oryctolagus cuniculus GN=... [more]
RBM4_MOUSE5.424e-1130.87RNA-binding protein 4 OS=Mus musculus GN=Rbm4 PE=2... [more]
RBM4B_RAT5.424e-1130.87RNA-binding protein 4B OS=Rattus norvegicus GN=Rbm... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C5-003-035-B08-CT.F Sweet orange flower, greenhouse plant Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY746559 ID=EY746559; Name=EY746559; organism=Citrus sinensis; type=EST; length=1043bp
CCACGCGTCCGAAAAAATATCTCCCTACCAAGACTTTACGTTCTAGGTTT
TCGAAGATCACATTCACAGCTATCAATCGCCGCTTTCGAAGCTATGATGA
GGCCTATCTTCTGTGGGAACTTTGAGTATGATGCTCGTCAGTCTGATCTG
GAGCGGCTTTTCAGAAGATATGGAAAAGTTGATAGAGTGGATATGAAGTC
TGGATTTGCATTTATCTATATGGATGATGAGAGAGATGCTGAGGATGCAA
TTCGAGGGCTCGATCGAACTGAATTCGGTCGTAAGGGACGCAGACTTCGT
GTTGAATGGACAAAGCATGAACGAGGAATCAGAAGGCCTGGGGGGGGTTC
AAGCGCAAGAAGACCTTCAACAAATACAAGACCTTCAAAGACCTTGTTTG
TCATTAATTTTGATCCATATCATACGCGCACCAGGGACTTAGAAAGGCAC
TTTGAGCCATATGGAAAAATAATAAGTGTTAGGATCAGAAGGAATTTTGC
ATTTGTTCAATATGAAGTGCAGGAGGATGCCACCAGAGCATTGGATGCTA
CAAACATGAGCAAGTTGACGGATCGAGTTATTTCAGTGGGAATATTGCAG
TTCGTGATGAACGATGACCGGAGAAATGGACACCGTCCTGATTAGAAAAT
CGTGATAGGGCCCCCAAAAAGGGGGAGGAGGAAATTTCCCAAGTCCCTTT
TAAAAAGGGGAAAAAAAGGGTAATCCCCTGGATTATTGGCCCGGGGCTCC
TAACCCCAAAGTCTTTTAACGGGAAAAAAAAGGGGGGAACCCTGATTTTT
TGGGCCCGCTTTAAAACCCCCCATTCCCCTTGAAGGGGGGGAATTGGGGG
GACCCCCCCCGATTTACCGGTCCGATAACCCCCGCCGCCCGACATCCCCC
CTCCACCAAAAAAAAAAAAAAGCGGTGGATTTTGGGGGCCGATCGTGCCC
GGGACGGCCCTCCCCCCCCCCCTCCCTCCCTTCTTATTTCCTGCACGGGG
GCGAACCCACGTGGCGTGCTATGGCCCTCTTTGGCAAGAACAA
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