EY688439

Overview
NameEY688439
Unique NameEY688439
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length861
Libraries
Library NameType
Sweet orange bark, greenhouse plantcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY688439 vs. ExPASy Swiss-Prot
Match: PTPM1_RAT (Protein-tyrosine phosphatase mitochondrial 1 OS=Rattus norvegicus GN=Ptpmt1 PE=2 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 8.794e-14
Identity = 53/127 (41.73%), Postives = 69/127 (54.33%), Query Frame = 1
Query:  253 ARALFYPTLLYNVVRNKF--QAEFRWWDRVDEFLLLGAVPFPTDVPCLK-ELGVGGVITLNEPYET--LVPTSLYHAHC-IDHLVIPTRDYCFAPSLGDICRAVDFICENALSRQTTYVHCKAGRGR 615
            AR LFYPTLLY V R +    A   W+ R+D  +LLGA+P  +    L  +  V GVIT+NE YET  L  TS    +  ++ L + T D    P+L ++ R V F  +     Q  YVHCKAGR R
Sbjct:   12 ARVLFYPTLLYTVFRGRVGGPAHRDWYHRIDHTVLLGALPLRSMTRRLVLDENVRGVITMNEEYETRFLCNTSKEWKNVGVEQLRLSTVDMTGVPTLANLHRGVQFALKYQSLGQCVYVHCKAGRSR 138          
BLAST of EY688439 vs. ExPASy Swiss-Prot
Match: PTPM1_MOUSE (Protein-tyrosine phosphatase mitochondrial 1 OS=Mus musculus GN=Ptpmt1 PE=1 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 8.794e-14
Identity = 52/127 (40.94%), Postives = 69/127 (54.33%), Query Frame = 1
Query:  253 ARALFYPTLLYNVVRNKFQ--AEFRWWDRVDEFLLLGAVPFPTDVPCLK-ELGVGGVITLNEPYET--LVPTSL-YHAHCIDHLVIPTRDYCFAPSLGDICRAVDFICENALSRQTTYVHCKAGRGR 615
            AR LFYPTLLY V R + +  A   W+ R+D  +LLGA+P       L  +  V GVIT+NE YET  L  TS  +    ++ L + T D    P+L ++ + V F  +     Q  YVHCKAGR R
Sbjct:   12 ARVLFYPTLLYTVFRGRVRGPAHRDWYHRIDHTVLLGALPLKNMTRRLVLDENVRGVITMNEEYETRFLCNTSKEWKKAGVEQLRLSTVDMTGVPTLANLHKGVQFALKYQALGQCVYVHCKAGRSR 138          
BLAST of EY688439 vs. ExPASy Swiss-Prot
Match: PTPM1_HUMAN (Protein-tyrosine phosphatase mitochondrial 1 OS=Homo sapiens GN=PTPMT1 PE=1 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 2.559e-13
Identity = 52/133 (39.10%), Postives = 73/133 (54.89%), Query Frame = 1
Query:  238 LIGAG-ARALFYPTLLYNVVRNKF--QAEFRWWDRVDEFLLLGAVPFPTDVPCL-KELGVGGVITLNEPYETLV---PTSLYHAHCIDHLVIPTRDYCFAPSLGDICRAVDFICENALSRQTTYVHCKAGRGR 615
            L+ AG AR LFYPTLLY + R K   +A   W+ R+D  +LLGA+P  +    L ++  V GVIT+NE YET      +  +    ++ L + T D    P+L ++ + V F  +     Q  YVHCKAGR R
Sbjct:    6 LLEAGLARVLFYPTLLYTLFRGKVPGRAHRDWYHRIDPTVLLGALPLRSLTRQLVQDENVRGVITMNEEYETRFLCNSSQEWKRLGVEQLRLSTVDMTGIPTLDNLQKGVQFALKYQSLGQCVYVHCKAGRSR 138          
BLAST of EY688439 vs. ExPASy Swiss-Prot
Match: PTPM1_DROME (Protein-tyrosine phosphatase mitochondrial 1-like protein OS=Drosophila melanogaster GN=Plip PE=2 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 6.543e-13
Identity = 48/140 (34.29%), Postives = 72/140 (51.43%), Query Frame = 1
Query:  253 ARALFYPTLLYNVVRNKFQAEFRWWDRVDEFLLLGAVPFPTDV-PCLKELGVGGVITLNEPYETLV---PTSLYHAHCIDHLVIPTRDYCFAPSLGDICRAVDFICENALSRQ---------------TTYVHCKAGRGR 615
            AR  FYPTLLYNV+  K  A   W+DR+DE ++LGA+PF +     +++  +  V+++NE YE       T  +    I+ L + T D   +P+   + R V+FI +    +Q               + YVHCKAGR R
Sbjct:    9 ARVSFYPTLLYNVLMEKASAR-NWYDRIDEHVILGALPFRSQANDLIEKENMKAVVSMNEDYELTAFSNNTEKWRKLGIEFLQLATTDIFESPNQEKLFRGVEFINKFLPLKQRIGGLSSSYQPENVGSVYVHCKAGRTR 147          

HSP 2 Score: 20.7866 bits (42), Expect = 6.543e-13
Identity = 10/24 (41.67%), Postives = 12/24 (50.00%), Query Frame = 3
Query:  612 TPAQLLFICYLVHPKQMTPDAAYD 683
            T +  L  CYL+     TPD A D
Sbjct:  146 TRSATLVGCYLMMKNGWTPDQAVD 169          
The following BLAST results are available for this feature:
BLAST of EY688439 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 4
Match NameE-valueIdentityDescription
PTPM1_RAT8.794e-1441.73Protein-tyrosine phosphatase mitochondrial 1 OS=Ra... [more]
PTPM1_MOUSE8.794e-1440.94Protein-tyrosine phosphatase mitochondrial 1 OS=Mu... [more]
PTPM1_HUMAN2.559e-1339.10Protein-tyrosine phosphatase mitochondrial 1 OS=Ho... [more]
PTPM1_DROME6.543e-1334.29Protein-tyrosine phosphatase mitochondrial 1-like ... [more]
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Properties
Property NameValue
Genbank descriptionCS00-C2-003-070-G08-CT.F Sweet orange bark, greenhouse plant Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY688439 ID=EY688439; Name=EY688439; organism=Citrus sinensis; type=EST; length=861bp
TTTCTTCCGGTGGCCAGAATTCAGCTTTTCTCGGTGGCGATTTCTGTAAT
TAATTTAGTGATTGTGTAGAGTTCGAGTTTGTATATTATGTATATTGAGG
AATTGAAGGGAGCAGAGGAGGAGGCCGTGGTGAAGAACGGAGAAGAGGAG
AGTTCAGAGTCTTGTGATCAAGACGACAGCGTTTCAGATGTCAGCGAAAT
TGGGAAAAGCTTTGTTGTTTCGGATGTGAAGAGGGTTTTAATTGGTGCAG
GAGCTCGTGCACTGTTTTACCCGACCCTGCTTTATAATGTTGTTAGGAAC
AAGTTTCAGGCTGAGTTTCGGTGGTGGGACCGTGTTGATGAGTTTTTGTT
GCTGGGTGCGGTTCCATTTCCTACTGATGTTCCATGCTTAAAGGAGCTTG
GTGTTGGTGGAGTGATCACACTGAATGAGCCATATGAGACTTTAGTCCCA
ACATCTCTATATCATGCCCACTGCATTGATCATTTAGTGATTCCTACACG
AGATTACTGCTTTGCACCATCTTTGGGTGACATATGCCGAGCTGTAGACT
TCATCTGTGAAAATGCATTGAGTAGGCAAACGACATATGTTCACTGTAAA
GCTGGCCGTGGACGCCAGCACAACTGTTGTTTATTTGTTACCTGGTGCAT
CCCAAGCAGATGACACCTGATGCTGCTTATGATTTTGGTGAGGTCCATTT
CCGGCCACGGTTCTTTTACCCTCCACCCCGGGGGCGGGTTGTTTTGGAGT
ACCTCACTCCTAGGGGGGGACCTGGCTTGGTTTATCCGGCGCCGGGGGTT
GATAAAAGTCTGGGAAGCTCCCCTGTGCACCCCCCCCCGACGAGCCTTGG
GGTTTTTGCGA
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