EY711459

Overview
NameEY711459
Unique NameEY711459
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length918
Libraries
Library NameType
Sweet orange fruit, development stadium (3 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
EY711459_ssr69 microsatellite EY711459_ssr69:69..83. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig2548 contig Csv1_Contig2548:66..983. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
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BLAST of EY711459 vs. ExPASy Swiss-Prot
Match: RING3_ARATH (E3 ubiquitin-protein ligase At3g02290 OS=Arabidopsis thaliana GN=At3g02290 PE=2 SV=1)

HSP 1 Score: 99.3673 bits (246), Expect = 3.106e-20
Identity = 39/61 (63.93%), Postives = 49/61 (80.33%), Query Frame = 1 
Query:  541 NVFAASEEEDTCPICLEEYDTENPKLITKCEHHFHLSCILEWNERSESCPICDQEMIFDHT 723
            N++  SE+ED CP CLEEY +ENPK++TKC HHFHLSCI EW ERSE+CP+C + M F+ T
Sbjct:  170 NMYILSEDEDVCPTCLEEYTSENPKIVTKCSHHFHLSCIYEWMERSENCPVCGKVMEFNET 230
The following BLAST results are available for this feature:
BLAST of EY711459 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
RING3_ARATH3.106e-2063.93E3 ubiquitin-protein ligase At3g02290 OS=Arabidops... [more]
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Properties
Property NameValue
Genbank descriptionCS00-C3-702-007-H11-CT.F Sweet orange fruit, development stadium (3 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY711459 ID=EY711459; Name=EY711459; organism=Citrus sinensis; type=EST; length=918bp
ATTAGTCACTATCTATCCTATNTCGAGTCTCATACGTCGACCACGCGTCC
GCTTCTTTTCTCCCACTGTCTTCTTCTTCTTCTCTCTCTGTGTTCCCCAA
GAGGAAATAATGCACCTACTGCTGCTTTGTGTTGGGTGGATAACAGAATA
AAGTGCAGGGAATGGGAGGCTGTTGTTGTTCTTCCAGGAAACCTCATCTG
CATGGAACGCCTGTTTACTACTATTGTCCACCAGCTCTGGAAGAGCGGGA
GTCGTTAACATCTCACAATGGCACAGCCTCTACATTCACAAGAGGACTCC
TGGTTGATTTCCATCTGGAAGCATCTACACCTGACACTTTCCGGGCCCCA
CCCTTACCTTTGCCATACGATGTTGTTTTTGGTTGCCCACCCTCAACAGA
CTCAGAATCCGTTGGAGAAACTGTCAGTGGTGGTAGTTTTGAAACATTAG
CTATGTGTGAAGTTGTTGAGGATGCAGACTGCAAAACTCAAGCTAGTTCT
TTGATTGCTTCACCAAGGAAGTCCTGAAGTTTCGCAATTGAATGTATTTG
CAGCATCCGAAGAGGAGGACACTTGTCCCATTTGCCTTGAAGAGTATGAT
ACAGAGAATCCAAAACTTATCACAAAATGTGAACATCATTTCCACCTATC
TTGCATTTTGGAGTGGAATGAAAGAAGTGAATCCTGCCCCATATGTGATC
AGGAAATGATATTTGATCATACCTTTAATTAGTAGCAAGTCTACTTAAAG
ATGGGAGTTTCTTTGCTATCTGAAATGAATGCTTGCTGGTTTATTAGATT
GCACATGCATGTCAGCTTTGTCTCATGGAAGAACCACAAATGCTGTTGAC
AAATCCATTTTATCTAAGTCCTCATATTTTTGAAGGACGAGCGTTTCCAA
TTTTATTGTTGCCCCTGT
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