CITRUS (RUTACEAE) SNP MARKERS BASED ON COMPETITIVE ALLELE-SPECIFIC PCR; TRANSFERABILITY ACROSS THE AURANTIOIDEAE SUBFAMILY

Publication Overview
TitleCITRUS (RUTACEAE) SNP MARKERS BASED ON COMPETITIVE ALLELE-SPECIFIC PCR; TRANSFERABILITY ACROSS THE AURANTIOIDEAE SUBFAMILY
AuthorsGARCIA-LOR A , ANCILLO G , NAVARRO L , OLLITRAULT P
TypeJournal Article
Journal NameApplications in Plant Sciences
Volume4
Issue1
Year2013
Page(s)1-6
CitationGARCIA-LOR A , ANCILLO G , NAVARRO L , OLLITRAULT P. CITRUS (RUTACEAE) SNP MARKERS BASED ON COMPETITIVE ALLELE-SPECIFIC PCR; TRANSFERABILITY ACROSS THE AURANTIOIDEAE SUBFAMILY. Applications in Plant Sciences. 2013; 4(1):1-6.

Abstract

Premise of the study: Single nucleotide polymorphism (SNP) markers based on Competitive Allele-Specifi c PCR (KASPar) were developed from sequences of three Citrus species. Their transferability was tested in 63 Citrus genotypes and 19 relative genera of the subfamily Aurantioideae to estimate the potential of SNP markers, selected from a limited intrageneric discovery panel, for ongoing broader diversity analysis at the intra- and intergeneric levels and systematic germplasm bank characterization. • Methods and Results: Forty-two SNP markers were developed using KASPar technology. Forty-one were successfully genotyped in all of the Citrus germplasm, where intra- and interspecifi c polymorphisms were observed. The transferability and diversity decreased with increasing taxonomic distance. • Conclusions: SNP markers based on the KASPar method developed from sequence data of a limited intrageneric discovery panel provide a valuable molecular resource for genetic diversity analysis of germplasm within a genus and should be useful for germplasm fingerprinting at a much broader diversity level.
Features
This publication contains information about 44 features:
Feature NameUniquenameType
F3'H-P30F3'H-P30genetic_marker
F3'H-M309F3'H-M309genetic_marker
F3'H-C341F3'H-C341genetic_marker
EMA-M30EMA-M30genetic_marker
ACO-P353ACO-P353genetic_marker
ACO-C601ACO-C601genetic_marker
F3 ′ H-P30F3 ′ H-P30genetic_marker
F3 ′ H-M309F3 ′ H-M309genetic_marker
F3 ′ H-C341F3 ′ H-C341genetic_marker
PEPC-M316PEPC-M316genetic_marker
PEPC-C328PEPC-C328genetic_marker
SOS1-M50SOS1-M50genetic_marker
CCC1-M85CCC1-M85genetic_marker
CCC1-P727CCC1-P727genetic_marker
TRPA-M593TRPA-M593genetic_marker
INVA-M437INVA-M437genetic_marker
INVA-P855INVA-P855genetic_marker
MDH-MP69MDH-MP69genetic_marker
MDH-M519MDH-M519genetic_marker
ATMR-C372ATMR-C372genetic_marker
ATMR-M728ATMR-M728genetic_marker
CHS-P57CHS-P57genetic_marker
CHS-M183CHS-M183genetic_marker
CHI-M598CHI-M598genetic_marker
PKF-C64PKF-C64genetic_marker

Pages

Stocks
This publication contains information about 50 stocks:
Stock NameUniquenameType
AzimboaAzimboacultivar
ChandlerChandlercultivar
Da xanhDa xanhcultivar
Deep redDeep redcultivar
Flores,Flores,cultivar
GilGilcultivar
Nam roiNam roicultivar
PinkPinkcultivar
Sans PepinsSans Pepinscultivar
TahitiTahiticultivar
TimorTimorcultivar
ArizonaArizonacultivar
Buddha handBuddha handcultivar
CorsicanCorsicancultivar
DiamanteDiamantecultivar
HumpangHumpangcultivar
Poncire CommunPoncire Communcultivar
BombayBombaycultivar
DancyDancycultivar
De soeDe soecultivar
ImperialImperialcultivar
FuzhuFuzhucultivar
LaduLaducultivar
Ladu ordinaireLadu ordinairecultivar
PonkanPonkancultivar

Pages

Properties
Additional details for this publication include:
Property NameValue
DOIdoi:10.3732/apps.1200406
URLhttp://www.bioone.org/doi/abs/10.3732/apps.1200406
Year2013