EY711422

Overview
NameEY711422
Unique NameEY711422
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length617
Libraries
Library NameType
Sweet orange fruit, development stadium (3 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2479 contig Csv1_Contig2479:158..774. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of EY711422 vs. ExPASy Swiss-Prot
Match: NTF2_ARATH (Nuclear transport factor 2 OS=Arabidopsis thaliana GN=NTF2 PE=2 SV=1)

HSP 1 Score: 208.764 bits (530), Expect = 1.827e-53
Identity = 100/114 (87.72%), Postives = 105/114 (92.11%), Query Frame = 3
Query:    3 FV*HYYTTFDANRTGLANLYQEGSMLTFEGQKIQGSQNIVAKLTSLPFQQCQHSITTVDCQPSGPAGGMLVFVSGNLQLAGEQHALKFSQMFHLMPTPQGSFYVLNDIFRLNYA 344
            FV HYY+TFD NR GLA LYQE SMLTFEGQKIQG Q+IVAKLTSLPFQQC+H I+TVDCQPSGPA GMLVFVSGNLQLAGE+HALKFSQMFHLMPTPQGSFYV NDIFRLNYA
Sbjct:   13 FVEHYYSTFDTNRVGLAGLYQEASMLTFEGQKIQGVQSIVAKLTSLPFQQCKHHISTVDCQPSGPASGMLVFVSGNLQLAGEEHALKFSQMFHLMPTPQGSFYVFNDIFRLNYA 126          
BLAST of EY711422 vs. ExPASy Swiss-Prot
Match: NTF2_ORYSJ (Nuclear transport factor 2 OS=Oryza sativa subsp. japonica GN=NTF2 PE=2 SV=1)

HSP 1 Score: 155.221 bits (391), Expect = 2.397e-37
Identity = 75/113 (66.37%), Postives = 86/113 (76.11%), Query Frame = 3
Query:    3 FV*HYYTTFDANRTGLANLYQEGSMLTFEGQKIQGSQNIVAKLTSLPFQQCQHSITTVDCQPSGPAGGMLVFVSGNLQLAGEQHALKFSQMFHLMPTPQGSFYVLNDIFRLNY 341
            FV HYY TFD NR  L +LYQ+GSMLTFEGQ+  G+  I  KL SLPF QC H I TVDCQPSGP GGMLVFVSG+L+   ++H LKFSQMF L+P   G+FYV ND+FRLNY
Sbjct:   10 FVEHYYRTFDTNRPALVSLYQDGSMLTFEGQQFLGAAAIAGKLGSLPFAQCHHDINTVDCQPSGPQGGMLVFVSGSLRTGPDEHPLKFSQMFQLLPA-GGNFYVQNDMFRLNY 121          
BLAST of EY711422 vs. ExPASy Swiss-Prot
Match: NTF2_ASHGO (Nuclear transport factor 2 OS=Ashbya gossypii GN=NTF2 PE=3 SV=1)

HSP 1 Score: 129.798 bits (325), Expect = 1.078e-29
Identity = 63/114 (55.26%), Postives = 85/114 (74.56%), Query Frame = 3
Query:    3 FV*HYYTTFDANRTGLANLYQEGSMLTFEGQKIQGSQNIVAKLTSLPFQQCQHSITTVDCQPSGPAGGMLVFVSGNLQLAGEQHALKFSQMFHLMPTPQGSFYVLNDIFRLNYA 344
            F   YY  FD +R+ L NLY++ SMLTFE  ++QG+++IV KL SLPFQ+ QH ITT+D QP+ P G +LV ++G+L +  EQ+A +FSQ+FHLMP    S+YV NDIFRLNY+
Sbjct:   12 FTEFYYNQFDTDRSQLGNLYRDQSMLTFETSQLQGAKDIVEKLVSLPFQKVQHRITTLDAQPASPNGDVLVMITGDLLIDDEQNAQRFSQVFHLMP-EGNSYYVFNDIFRLNYS 124          
BLAST of EY711422 vs. ExPASy Swiss-Prot
Match: NTF2_EMENI (Nuclear transport factor 2 OS=Emericella nidulans GN=ntf2 PE=3 SV=1)

HSP 1 Score: 129.028 bits (323), Expect = 1.840e-29
Identity = 63/113 (55.75%), Postives = 81/113 (71.68%), Query Frame = 3
Query:    3 FV*HYYTTFDANRTGLANLYQEGSMLTFEGQKIQGSQNIVAKLTSLPFQQCQHSITTVDCQPSGPAGGMLVFVSGNLQLAGEQHALKFSQMFHLMPTPQGSFYVLNDIFRLNY 341
            FV  YY TFD NR GLA LY++ SMLTFE   IQG   I+ KLTSLPFQ+ QH ++T+D QPSG  GG+LV V+G L +  E++ + ++Q F LMP   GS++VLND+FRL Y
Sbjct:   11 FVTFYYQTFDGNRAGLAPLYRDHSMLTFETSAIQGVAGIIEKLTSLPFQKVQHQVSTLDAQPSGEHGGILVLVTGALLVDEEKNPMNYTQTFQLMPDGAGSYFVLNDVFRLIY 123          
BLAST of EY711422 vs. ExPASy Swiss-Prot
Match: NTF2_KLULA (Nuclear transport factor 2 OS=Kluyveromyces lactis GN=NTF2 PE=3 SV=1)

HSP 1 Score: 127.487 bits (319), Expect = 5.352e-29
Identity = 63/114 (55.26%), Postives = 84/114 (73.68%), Query Frame = 3
Query:    3 FV*HYYTTFDANRTGLANLYQEGSMLTFEGQKIQGSQNIVAKLTSLPFQQCQHSITTVDCQPSGPAGGMLVFVSGNLQLAGEQHALKFSQMFHLMPTPQGSFYVLNDIFRLNYA 344
            F   YY  FD++RT L NLY+E SMLTFE  ++QG+++IV KL SLPFQ+  H ITT+D QP+ P G +LV ++G+L +  EQ+  +FSQ+FHLMP    S+YV NDIFRLNY+
Sbjct:   12 FTEFYYNQFDSDRTQLGNLYREQSMLTFETTQLQGAKDIVEKLVSLPFQKVAHRITTLDAQPASPNGDVLVMITGDLLIDEEQNPQRFSQVFHLMP-EGSSYYVYNDIFRLNYS 124          
BLAST of EY711422 vs. ExPASy Swiss-Prot
Match: NTF2_SCHPO (Nuclear transport factor 2 OS=Schizosaccharomyces pombe GN=ntf2 PE=2 SV=2)

HSP 1 Score: 125.561 bits (314), Expect = 2.034e-28
Identity = 61/113 (53.98%), Postives = 86/113 (76.11%), Query Frame = 3
Query:    3 FV*HYYTTFDANRTGLANLYQEGSMLTFEGQKIQGSQNIVAKLTSLPFQQCQHSITTVDCQPSGPAGGMLVFVSGNLQLAGEQHALKFSQMFHLMPTPQGSFYVLNDIFRLNY 341
            F   YY TFD++R+ L++LY+E SML+FEG ++QG++ IV KL SLPFQ+ QH I+T+D QP+G  G ++V V+G L L  EQ A ++SQ+FHL+    G++YVLND+FRLNY
Sbjct:   11 FTQFYYQTFDSDRSQLSSLYREESMLSFEGAQLQGTKAIVEKLVSLPFQRVQHRISTLDAQPTGTTGSVIVMVTGELLLDEEQMAQRYSQVFHLV-NNNGNYYVLNDLFRLNY 122          
BLAST of EY711422 vs. ExPASy Swiss-Prot
Match: NTF2_YEAST (Nuclear transport factor 2 OS=Saccharomyces cerevisiae GN=NTF2 PE=1 SV=2)

HSP 1 Score: 125.176 bits (313), Expect = 2.656e-28
Identity = 61/114 (53.51%), Postives = 83/114 (72.81%), Query Frame = 3
Query:    3 FV*HYYTTFDANRTGLANLYQEGSMLTFEGQKIQGSQNIVAKLTSLPFQQCQHSITTVDCQPSGPAGGMLVFVSGNLQLAGEQHALKFSQMFHLMPTPQGSFYVLNDIFRLNYA 344
            F   YY  FD +R+ L NLY+  SMLTFE  ++QG+++IV KL SLPFQ+ QH ITT+D QP+ P G +LV ++G+L +  EQ+  +FSQ+FHL+P    S+YV NDIFRLNY+
Sbjct:   12 FTQFYYNQFDTDRSQLGNLYRNESMLTFETSQLQGAKDIVEKLVSLPFQKVQHRITTLDAQPASPNGDVLVMITGDLLIDEEQNPQRFSQVFHLIP-DGNSYYVFNDIFRLNYS 124          
BLAST of EY711422 vs. ExPASy Swiss-Prot
Match: NTF2_DEBHA (Nuclear transport factor 2 OS=Debaryomyces hansenii GN=NTF2 PE=3 SV=1)

HSP 1 Score: 124.79 bits (312), Expect = 3.469e-28
Identity = 61/110 (55.45%), Postives = 82/110 (74.55%), Query Frame = 3
Query:   15 YYTTFDANRTGLANLYQEGSMLTFEGQKIQGSQNIVAKLTSLPFQQCQHSITTVDCQPSGPAGGMLVFVSGNLQLAGEQHALKFSQMFHLMPTPQGSFYVLNDIFRLNYA 344
            YY  FD++RT L NLY+E SMLTFE  ++QG+++IV KL SLPFQ+  H I+T+D QP  P G +LV V+G L +  EQ+A ++SQ+FHL+P    S+YV NDIFRLNY+
Sbjct:   16 YYQQFDSDRTQLGNLYREQSMLTFETSQLQGAKDIVEKLVSLPFQKVAHRISTLDAQPGSPNGDILVMVTGELIIDDEQNAQRYSQVFHLIP-DGNSYYVFNDIFRLNYS 124          
BLAST of EY711422 vs. ExPASy Swiss-Prot
Match: NTF2_CANGA (Nuclear transport factor 2 OS=Candida glabrata GN=NTF2 PE=3 SV=1)

HSP 1 Score: 124.405 bits (311), Expect = 4.531e-28
Identity = 60/114 (52.63%), Postives = 84/114 (73.68%), Query Frame = 3
Query:    3 FV*HYYTTFDANRTGLANLYQEGSMLTFEGQKIQGSQNIVAKLTSLPFQQCQHSITTVDCQPSGPAGGMLVFVSGNLQLAGEQHALKFSQMFHLMPTPQGSFYVLNDIFRLNYA 344
            F   YY  FD++R+ L NLY++ SMLTFE  ++QG+++IV KL SLPFQ+  H ITT+D QP+ P G +LV ++G+L +  EQ+  +FSQ+FHL+P    S+YV NDIFRLNY+
Sbjct:   12 FTEFYYNQFDSDRSQLGNLYRDESMLTFETSQLQGAKSIVEKLVSLPFQKVAHRITTLDAQPASPNGDVLVMITGDLLIDDEQNPQRFSQVFHLIP-DGNSYYVFNDIFRLNYS 124          
BLAST of EY711422 vs. ExPASy Swiss-Prot
Match: NTF2_CANAL (Nuclear transport factor 2 OS=Candida albicans GN=NTF2 PE=3 SV=1)

HSP 1 Score: 122.094 bits (305), Expect = 2.249e-27
Identity = 59/110 (53.64%), Postives = 82/110 (74.55%), Query Frame = 3
Query:   15 YYTTFDANRTGLANLYQEGSMLTFEGQKIQGSQNIVAKLTSLPFQQCQHSITTVDCQPSGPAGGMLVFVSGNLQLAGEQHALKFSQMFHLMPTPQGSFYVLNDIFRLNYA 344
            YY  FD++R+ L NLY+  SMLTFE  ++QG+++IV KL SLPFQ+  H I+T+D QP+   G +LV V+G L +  EQ+A ++SQ+FHL+P   GS+YV NDIFRLNY+
Sbjct:   16 YYNQFDSDRSQLGNLYRNESMLTFETSQLQGARDIVEKLASLPFQKVAHRISTLDAQPASANGDILVMVTGELLIDEEQNAQRYSQVFHLIP-DNGSYYVFNDIFRLNYS 124          
The following BLAST results are available for this feature:
BLAST of EY711422 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 21
Match NameE-valueIdentityDescription
NTF2_ARATH1.827e-5387.72Nuclear transport factor 2 OS=Arabidopsis thaliana... [more]
NTF2_ORYSJ2.397e-3766.37Nuclear transport factor 2 OS=Oryza sativa subsp. ... [more]
NTF2_ASHGO1.078e-2955.26Nuclear transport factor 2 OS=Ashbya gossypii GN=N... [more]
NTF2_EMENI1.840e-2955.75Nuclear transport factor 2 OS=Emericella nidulans ... [more]
NTF2_KLULA5.352e-2955.26Nuclear transport factor 2 OS=Kluyveromyces lactis... [more]
NTF2_SCHPO2.034e-2853.98Nuclear transport factor 2 OS=Schizosaccharomyces ... [more]
NTF2_YEAST2.656e-2853.51Nuclear transport factor 2 OS=Saccharomyces cerevi... [more]
NTF2_DEBHA3.469e-2855.45Nuclear transport factor 2 OS=Debaryomyces hanseni... [more]
NTF2_CANGA4.531e-2852.63Nuclear transport factor 2 OS=Candida glabrata GN=... [more]
NTF2_CANAL2.249e-2753.64Nuclear transport factor 2 OS=Candida albicans GN=... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionCS00-C3-702-007-E08-CT.F Sweet orange fruit, development stadium (3 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY711422 ID=EY711422; Name=EY711422; organism=Citrus sinensis; type=EST; length=617bp
CCTTCGTCTAGCACTACTACACGACGTTTGATGCCAATCGTACGGGGCTC
GCCAATCTCTATCAGGAAGGTTCCATGTTGACTTTTGAAGGTCAAAAAAT
CCAAGGCTCGCAAAACATCGTCGCTAAGCTCACTAGCCTTCCCTTCCAGC
AGTGCCAGCACTCCATCACCACCGTCGATTGCCAGCCCTCCGGTCCCGCT
GGCGGCATGCTCGTTTTTGTCTCCGGTAATCTCCAACTCGCTGGTGAACA
GCACGCTCTCAAGTTCAGCCAGATGTTCCATTTGATGCCAACACCTCAGG
GAAGCTTTTATGTGTTGAATGACATATTCAGGTTGAACTATGCATGAAGA
GAAGATTGATTGAAAAGGGGTGCAACTCCTGAAGGAGTGAAACATGTTTC
CTTATCTTTATTGAATTTTAAACATTTAAATGAACACTGGGTTTTTCTGT
GGTCGGTTATGTTTAAGGTTCCCTTGTGCCTTTCCTGAACTTTAAATAGA
GACATCTTTTCTGTGATTGGTTGAGTAACTGCAAGATCTCCCTGAAGAAG
TTGGGTCTTAGTGAAATGAATCAGAAATATTTGCAATTGTCTGATTACAA
AAAAAAAAAAAAAAAAA
back to top