EY711349

Overview
NameEY711349
Unique NameEY711349
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length444
Libraries
Library NameType
Sweet orange fruit, development stadium (3 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig12466 contig Csv1_Contig12466:1298..1741. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of EY711349 vs. ExPASy Swiss-Prot
Match: RCA_ARATH (Ribulose bisphosphate carboxylase/oxygenase activase, chloroplastic OS=Arabidopsis thaliana GN=RCA PE=1 SV=2)

HSP 1 Score: 71.633 bits (174), Expect = 8.240e-15
Identity = 30/36 (83.33%), Postives = 33/36 (91.67%), Query Frame = 1
Query:  145 GKAAQQMNVPVPEGCTDPTAENFDPTARSDDGSCQY 252
            GK AQQ+N+PVPEGCTDP AENFDPTARSDDG+C Y
Sbjct:  437 GKGAQQVNLPVPEGCTDPVAENFDPTARSDDGTCVY 472          

HSP 2 Score: 30.0314 bits (66), Expect = 8.240e-15
Identity = 13/17 (76.47%), Postives = 14/17 (82.35%), Query Frame = 3
Query:   57 ALGEANADAIQSGNFYG 107
            ALG+ANADAI  G FYG
Sbjct:  421 ALGDANADAIGRGTFYG 437          
BLAST of EY711349 vs. ExPASy Swiss-Prot
Match: RCA1_LARTR (Ribulose bisphosphate carboxylase/oxygenase activase 1, chloroplastic OS=Larrea tridentata GN=RCA1 PE=2 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 2.473e-13
Identity = 31/38 (81.58%), Postives = 34/38 (89.47%), Query Frame = 1
Query:  142 GGKAAQQM-NVPVPEGCTDPTAENFDPTARSDDGSCQY 252
            GG+AAQQ+ NVPVPEGCTDP A N+DPTARSDDGSC Y
Sbjct:  437 GGQAAQQVGNVPVPEGCTDPQATNYDPTARSDDGSCVY 474          

HSP 2 Score: 28.8758 bits (63), Expect = 2.473e-13
Identity = 12/17 (70.59%), Postives = 14/17 (82.35%), Query Frame = 3
Query:   57 ALGEANADAIQSGNFYG 107
            ALG+AN DAI+ G FYG
Sbjct:  421 ALGDANNDAIKRGTFYG 437          
BLAST of EY711349 vs. ExPASy Swiss-Prot
Match: RCA_ORYSJ (Ribulose bisphosphate carboxylase/oxygenase activase, chloroplastic OS=Oryza sativa subsp. japonica GN=RCA PE=1 SV=2)

HSP 1 Score: 66.2402 bits (160), Expect = 3.215e-13
Identity = 30/38 (78.95%), Postives = 33/38 (86.84%), Query Frame = 1
Query:  145 GKAAQQM-NVPVPEGCTDPTAENFDPTARSDDGSCQYT 255
            G+ AQQ  N+PVPEGCTDP A+NFDPTARSDDGSC YT
Sbjct:  428 GQGAQQAGNLPVPEGCTDPVAKNFDPTARSDDGSCLYT 465          

HSP 2 Score: 30.0314 bits (66), Expect = 3.215e-13
Identity = 11/17 (64.71%), Postives = 17/17 (100.00%), Query Frame = 3
Query:   57 ALGEANADAIQSGNFYG 107
            ALG+AN+DA+++G+FYG
Sbjct:  412 ALGDANSDAMKTGSFYG 428          
BLAST of EY711349 vs. ExPASy Swiss-Prot
Match: RCA_SPIOL (Ribulose bisphosphate carboxylase/oxygenase activase, chloroplastic OS=Spinacia oleracea PE=1 SV=2)

HSP 1 Score: 67.0106 bits (162), Expect = 1.187e-12
Identity = 28/38 (73.68%), Postives = 34/38 (89.47%), Query Frame = 1
Query:  145 GKAAQQMNVPVPEGCTDPTAENFDPTARSDDGSCQYTL 258
            GKAAQQ+++PV +GCTDP A+N+DPTARSDDGSC Y L
Sbjct:  435 GKAAQQVSLPVAQGCTDPEAKNYDPTARSDDGSCTYNL 472          

HSP 2 Score: 27.335 bits (59), Expect = 1.187e-12
Identity = 11/17 (64.71%), Postives = 13/17 (76.47%), Query Frame = 3
Query:   57 ALGEANADAIQSGNFYG 107
            ALG+AN DAI  G F+G
Sbjct:  419 ALGDANKDAIDRGTFFG 435          
BLAST of EY711349 vs. ExPASy Swiss-Prot
Match: RCAA_HORVU (Ribulose bisphosphate carboxylase/oxygenase activase A, chloroplastic OS=Hordeum vulgare GN=RCAA PE=2 SV=1)

HSP 1 Score: 65.0846 bits (157), Expect = 1.188e-12
Identity = 28/37 (75.68%), Postives = 31/37 (83.78%), Query Frame = 1
Query:  145 GKAAQQMNVPVPEGCTDPTAENFDPTARSDDGSCQYT 255
            GK AQQ  +PVPEGCTD  A+N+DPTARSDDGSC YT
Sbjct:  427 GKGAQQGTLPVPEGCTDQNAKNYDPTARSDDGSCLYT 463          

HSP 2 Score: 29.261 bits (64), Expect = 1.188e-12
Identity = 11/17 (64.71%), Postives = 16/17 (94.12%), Query Frame = 3
Query:   57 ALGEANADAIQSGNFYG 107
            ALG+AN DA+++G+FYG
Sbjct:  411 ALGDANQDAMKTGSFYG 427          
The following BLAST results are available for this feature:
BLAST of EY711349 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 5
Match NameE-valueIdentityDescription
RCA_ARATH8.240e-1583.33Ribulose bisphosphate carboxylase/oxygenase activa... [more]
RCA1_LARTR2.473e-1381.58Ribulose bisphosphate carboxylase/oxygenase activa... [more]
RCA_ORYSJ3.215e-1378.95Ribulose bisphosphate carboxylase/oxygenase activa... [more]
RCA_SPIOL1.187e-1273.68Ribulose bisphosphate carboxylase/oxygenase activa... [more]
RCAA_HORVU1.188e-1275.68Ribulose bisphosphate carboxylase/oxygenase activa... [more]
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Properties
Property NameValue
Genbank descriptionCS00-C3-702-006-F11-CT.F Sweet orange fruit, development stadium (3 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY711349 ID=EY711349; Name=EY711349; organism=Citrus sinensis; type=EST; length=444bp
TGCGGTACCGGTCCGGAATTCCTTGCCGACCACGCGTCCGCCCACGCGTT
TTGCCCGCTCTTGGTGAAGCTAATGCAGATGCTATTCAGAGTGGAAATTT
CTATGGTTAGCCCCCTTGATCCTAGCTAAGAGGCCTTGATGGGAGGCAAA
GCAGCCCAGCAAATGAATGTTCCAGTTCCTGAAGGATGTACTGATCCTAC
TGCAGAAAACTTTGATCCAACTGCAAGAAGTGATGATGGAAGCTGCCAAT
ACACGCTTTAGGCCTTGTTTCTAAGGGTTGAGAAGTGTCGCACTTTGCTT
AGGATGTGAGATATTCAAATAATATTGTTGCATTTTCATTTCTTTGTTAA
TTAGAAAGAATCCTCTAATTTTGTGTTATATCACAACTCTTTATTCGATC
TTTAAAAGGTGCTCCTTCTTACCATTAAAAAAAAAAAAAAAAAA
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