EY711324

Overview
NameEY711324
Unique NameEY711324
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length615
Libraries
Library NameType
Sweet orange fruit, development stadium (3 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY711324 vs. ExPASy Swiss-Prot
Match: YGAD_PSEPU (16.7 kDa protein in recA 5'region OS=Pseudomonas putida PE=3 SV=1)

HSP 1 Score: 139.428 bits (350), Expect = 1.346e-32
Identity = 73/104 (70.19%), Postives = 81/104 (77.88%), Query Frame = -2
Query:  279 SXLFEAGYVRYSIRKKTRQWNVRKALFPKVGAVSREVLEAMVRGAQEKSLARFAVAVSGVAGPDGGSPDKPVGTVWLAWGVGDEVTTELEHFPGNRDEVRRQTV 590
            S  FEAGYV YS  +KTRQ  V + LF +VGAVS+EV+EAMVRGAQ  S ARFAVAVSGVAGPDGGSP KPVGTVWLAWG G  V +E   F G+R+ VRRQTV
Sbjct:   44 SAWFEAGYVTYSNAQKTRQLGVPEVLFGQVGAVSQEVVEAMVRGAQAASGARFAVAVSGVAGPDGGSPAKPVGTVWLAWGDGSRVFSERRQFDGDREAVRRQTV 147          
BLAST of EY711324 vs. ExPASy Swiss-Prot
Match: CINAL_AKKM8 (CinA-like protein OS=Akkermansia muciniphila (strain ATCC BAA-835) GN=Amuc_0430 PE=3 SV=1)

HSP 1 Score: 97.8265 bits (242), Expect = 4.493e-20
Identity = 51/102 (50.00%), Postives = 67/102 (65.69%), Query Frame = -2
Query:  288 SXLFEAGYVRYSIRKKTRQWNVRKALFPKVGAVSREVLEAMVRGAQEKSLARFAVAVSGVAGPDGGSPDKPVGTVWLAWGV-GDEVTTELEHFPGNRDEVRR 590
            S +FE G+V Y+ R KT    V + +  + GAVS  V++AM  GA E+S A  AVAVSG+AGP GG+P+KPVGTVWLAW   G E  TE+  +P +R   R+
Sbjct:  292 SGVFEFGWVTYADRAKTEMLGVPENVLKRYGAVSEPVVKAMAEGALERSGADVAVAVSGIAGPGGGTPEKPVGTVWLAWAFRGGETRTEMMLYPRDRSSFRK 393          
BLAST of EY711324 vs. ExPASy Swiss-Prot
Match: CINAL_COLP3 (CinA-like protein OS=Colwellia psychrerythraea (strain 34H / ATCC BAA-681) GN=CPS_3682 PE=3 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 7.664e-20
Identity = 51/99 (51.52%), Postives = 64/99 (64.65%), Query Frame = -2
Query:  303 SRKSXLFEAGYVRYSIRKKTRQWNVRKALFPKVGAVSREVLEAMVRGAQEKSLARFAVAVSGVAGPDGGSPDKPVGTVWLAWGVGDEVTTELEHFPGNR 599
            S  S  FEAGYV YS + KT   +V   LF + GAVS +V+ AM +G+  KS A   +AVSGVAGP+GG+ +KPVGTVWLAWG  D + T+    P  R
Sbjct:  297 SGSSMNFEAGYVTYSNKMKTAMLDVPAKLFEQYGAVSEQVVVAMAKGSLIKSTADLTIAVSGVAGPNGGTEEKPVGTVWLAWGSIDNIKTQCLLLPYKR 395          
BLAST of EY711324 vs. ExPASy Swiss-Prot
Match: YGAD_ECOLI (Protein ygaD OS=Escherichia coli (strain K12) GN=ygaD PE=1 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 3.560e-17
Identity = 49/103 (47.57%), Postives = 63/103 (61.17%), Query Frame = -2
Query:  285 SXLFEAGYVRYSIRKKTRQWNVRKALFPKVGAVSREVLEAMVRGAQEKSLARFAVAVSGVAGPDGGSPDKPVGTVWLAWGVG-DEVTTELEHFPGNRDEVRRQ 590
            S  FE G+V YS   K +   VR+    + GAVS  V+  M  GA + + A +AV++SG+AGPDGGS +KPVGTVW A+     E  T  E F G+RD VRRQ
Sbjct:   46 SAWFERGFVTYSNEAKAQMIGVREETLAQHGAVSEPVVVEMAIGALKAARADYAVSISGIAGPDGGSEEKPVGTVWFAFATARGEGITRRECFSGDRDAVRRQ 148          
BLAST of EY711324 vs. ExPASy Swiss-Prot
Match: YGAD_ECOL6 (Protein ygaD OS=Escherichia coli O6 GN=ygaD PE=3 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 3.560e-17
Identity = 49/103 (47.57%), Postives = 63/103 (61.17%), Query Frame = -2
Query:  285 SXLFEAGYVRYSIRKKTRQWNVRKALFPKVGAVSREVLEAMVRGAQEKSLARFAVAVSGVAGPDGGSPDKPVGTVWLAWGVG-DEVTTELEHFPGNRDEVRRQ 590
            S  FE G+V YS   K +   VR+    + GAVS  V+  M  GA + + A +AV++SG+AGPDGGS +KPVGTVW A+     E  T  E F G+RD VRRQ
Sbjct:   46 SAWFERGFVTYSNEAKAQMIGVREETLAQHGAVSEPVVVEMAIGALKAARADYAVSISGIAGPDGGSEEKPVGTVWFAFATARGEGITRRECFSGDRDAVRRQ 148          
BLAST of EY711324 vs. ExPASy Swiss-Prot
Match: YGAD_SHIFL (Protein ygaD OS=Shigella flexneri GN=ygaD PE=3 SV=2)

HSP 1 Score: 87.0409 bits (214), Expect = 7.931e-17
Identity = 49/103 (47.57%), Postives = 63/103 (61.17%), Query Frame = -2
Query:  285 SXLFEAGYVRYSIRKKTRQWNVRKALFPKVGAVSREVLEAMVRGAQEKSLARFAVAVSGVAGPDGGSPDKPVGTVWLAWGVG-DEVTTELEHFPGNRDEVRRQ 590
            S  FE G+V YS   K +   VR+    + GAVS  V+  M  GA + + A +AV++SG+AGPDGGS +KPVGTVW A+     E  T  E F G+RD VRRQ
Sbjct:   46 SAWFERGFVTYSNEAKAQMIGVREETLAQHGAVSEPVVVEMAIGALKAARADYAVSISGIAGPDGGSEEKPVGTVWFAFATARGEGITWRECFSGDRDAVRRQ 148          
BLAST of EY711324 vs. ExPASy Swiss-Prot
Match: CINAL_GEOSF (CinA-like protein OS=Geobacter sp. (strain FRC-32) GN=Geob_1113 PE=3 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 5.140e-16
Identity = 49/106 (46.23%), Postives = 65/106 (61.32%), Query Frame = -2
Query:  282 SRKSXLFEAGYVRYSIRKKTRQWNVRKALFPKVGAVSREVLEAMVRGAQEKSLARFAVAVSGVAGPDGGSPDKPVGTVWLAWGVGDEVTTELEHFPGNRDEVRRQT 599
            S  S  F  G V YS R K     V   L  + GAVS EV  AM RGA+EKS +  A+AV+G+AGP+GGS +KPVGTV++A    ++    L +F G+R++VR  T
Sbjct:  292 SGSSAYFLEGLVTYSNRAKIDLLGVPAQLLEEKGAVSAEVAMAMARGAREKSGSDLALAVTGIAGPEGGSAEKPVGTVFMALAGQEQCRVRLFNFHGDREQVRLVT 397          
BLAST of EY711324 vs. ExPASy Swiss-Prot
Match: CINAL_GEOBB (CinA-like protein OS=Geobacter bemidjiensis (strain Bem / ATCC BAA-1014 / DSM 16622) GN=Gbem_3628 PE=3 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 2.551e-15
Identity = 48/103 (46.60%), Postives = 61/103 (59.22%), Query Frame = -2
Query:  282 SXLFEAGYVRYSIRKKTRQWNVRKALFPKVGAVSREVLEAMVRGAQEKSLARFAVAVSGVAGPDGGSPDKPVGTVWLAWGVGDEVTTELEHFPGNRDEVRRQT 590
            S  F  G V YS   KTR   V   L  + GAVS EV  AM  GA+E + +  A++V+G+AGPDGG+P+KPVGTV+LA         E  +F G+RD VR  T
Sbjct:  290 SAYFLEGNVTYSNEAKTRMLQVPAPLIAEHGAVSAEVARAMAVGAREAAGSDLALSVTGIAGPDGGTPEKPVGTVYLALVDQGSCRVERFNFQGDRDRVRSIT 392          
BLAST of EY711324 vs. ExPASy Swiss-Prot
Match: CINAL_GEOMG (CinA-like protein OS=Geobacter metallireducens (strain GS-15 / ATCC 53774 / DSM 7210) GN=Gmet_0196 PE=3 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 4.352e-15
Identity = 45/103 (43.69%), Postives = 63/103 (61.17%), Query Frame = -2
Query:  282 SXLFEAGYVRYSIRKKTRQWNVRKALFPKVGAVSREVLEAMVRGAQEKSLARFAVAVSGVAGPDGGSPDKPVGTVWLAWGVGDEVTTELEHFPGNRDEVRRQT 590
            S  F    V Y+   K R   V + L  + GAVS EV +AM RGA++ + +  A+AV+G+AGP+GGSPDKPVGTV++A       + +  HF G+RD +R  T
Sbjct:  296 SAYFFLSAVTYANDAKARLLGVPQGLLAETGAVSAEVAKAMARGARQLAGSDLALAVTGIAGPEGGSPDKPVGTVFIALADQAGCSAKGYHFRGDRDRIRTIT 398          
BLAST of EY711324 vs. ExPASy Swiss-Prot
Match: CINAL_GEOSL (CinA-like protein OS=Geobacter sulfurreducens GN=GSU0143 PE=3 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 1.654e-14
Identity = 46/103 (44.66%), Postives = 59/103 (57.28%), Query Frame = -2
Query:  282 SXLFEAGYVRYSIRKKTRQWNVRKALFPKVGAVSREVLEAMVRGAQEKSLARFAVAVSGVAGPDGGSPDKPVGTVWLAWGVGDEVTTELEHFPGNRDEVRRQT 590
            S  F  G V Y+   K R   V  AL  + GAVS +V  AM RGA+  + +  A+AV+G+AGPDGGS DKPVGTV+LA       + +   F G RD +R  T
Sbjct:  296 SAYFFMGLVTYANEAKERLLGVPTALLAEKGAVSADVARAMARGARHVAGSDLALAVTGIAGPDGGSDDKPVGTVYLALADRAGCSVKSYRFAGERDAIRTVT 398          
The following BLAST results are available for this feature:
BLAST of EY711324 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 87
Match NameE-valueIdentityDescription
YGAD_PSEPU1.346e-3270.1916.7 kDa protein in recA 5'region OS=Pseudomonas p... [more]
CINAL_AKKM84.493e-2050.00CinA-like protein OS=Akkermansia muciniphila (stra... [more]
CINAL_COLP37.664e-2051.52CinA-like protein OS=Colwellia psychrerythraea (st... [more]
YGAD_ECOLI3.560e-1747.57Protein ygaD OS=Escherichia coli (strain K12) GN=y... [more]
YGAD_ECOL63.560e-1747.57Protein ygaD OS=Escherichia coli O6 GN=ygaD PE=3 S... [more]
YGAD_SHIFL7.931e-1747.57Protein ygaD OS=Shigella flexneri GN=ygaD PE=3 SV=... [more]
CINAL_GEOSF5.140e-1646.23CinA-like protein OS=Geobacter sp. (strain FRC-32)... [more]
CINAL_GEOBB2.551e-1546.60CinA-like protein OS=Geobacter bemidjiensis (strai... [more]
CINAL_GEOMG4.352e-1543.69CinA-like protein OS=Geobacter metallireducens (st... [more]
CINAL_GEOSL1.654e-1444.66CinA-like protein OS=Geobacter sulfurreducens GN=G... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C3-702-006-D09-CT.F Sweet orange fruit, development stadium (3 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY711324 ID=EY711324; Name=EY711324; organism=Citrus sinensis; type=EST; length=615bp
ACCCAGAGAGCCAGTAGAGATAGCCGGGATCGCCTGACGGTCGTGATCGC
CCATACGCATTACGGCACCCTTGCCGAATTGACGTTCGATCTGACCCAGG
GCCGCAGCCAAGGCTTTCTTCTTGTTGTCGTCCATTAAAGTCCTCACGTA
ATCAATAAGGCCTGGCGGCCAACACCTGTATAAGTAGACAGTATTGTTCC
ACAAAGATCCGTGATCGCCTACCCCTGTTTTTCTATTTCTGCTGCAGCTC
GTCGCAACAAGCCCTCTAGCGCGGCCTTTACCGTTTGTCGGCGGACCTCG
TCACGGTTCCCAGGGAAGTGTTCAAGCTCGGTGGTGACCTCATCGCCCAC
GCCCCAGGCCAGCCATACGGTGCCCACCGGTTTGTCCGGCGAACCGCCAT
CGGGGCCGGCCACACCGCTGACCGCTACGGCAAAACGCGCCAGGCTTTTC
TCCTGGGCACCTCGCACCATCGCCTCCAACACTTCGCGACTGACAGCCCC
GACTTTGGGGAACAGCGCTTTCCGGACATTCCACTGCCGGGTCTTCTTGC
GGATGGAATACCTGACATAGCCCGCCTCGAACAGGNCAGACTTCCGGGAA
TCGCGGGATGGCCTG
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