EY711262

Overview
NameEY711262
Unique NameEY711262
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length910
Libraries
Library NameType
Sweet orange fruit, development stadium (3 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
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BLAST of EY711262 vs. ExPASy Swiss-Prot
Match: PP247_ARATH (Pentatricopeptide repeat-containing protein At3g22470, mitochondrial OS=Arabidopsis thaliana GN=At3g22470 PE=2 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 9.951e-11
Identity = 44/141 (31.21%), Postives = 69/141 (48.94%), Query Frame = 1 
Query:   61 RNCLPDKISYSTLLNGLLKWGKIRPAVSIFKEMVRFGFEADERMMNSLLRGLCMKSWEEKDLLQDAYPVFEKMTKKVSVTYPGTYGIVIRTLGKGKKTDEALIHLHHAIEMGHIPPTITFYNVNFNPFVVEGKIDQCLMLF 483
            RN +PD +++S L++  +K GK+  A  ++ EM+  G   D    NSL+ G C     +++ L +A  +F+ M  K       TY I+I +  K K+ D+ +         G IP TIT YN     F   GK++    LF
Sbjct:  309 RNIIPDVVTFSALIDVFVKEGKLLEAKELYNEMITRGIAPDTITYNSLIDGFC-----KENCLHEANQMFDLMVSKGCEPDIVTYSILINSYCKAKRVDDGMRLFREISSKGLIPNTIT-YNTLVLGFCQSGKLNAAKELF 443
The following BLAST results are available for this feature:
BLAST of EY711262 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
PP247_ARATH9.951e-1131.21Pentatricopeptide repeat-containing protein At3g22... [more]
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Properties
Property NameValue
Genbank descriptionCS00-C3-702-005-G01-CT.F Sweet orange fruit, development stadium (3 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY711262 ID=EY711262; Name=EY711262; organism=Citrus sinensis; type=EST; length=910bp
CCACGCGTCCGGGAAGGGACGCCTATGAAGGGTGTTGGTTTGTTGAAGCT
TATGAAGAAGAGGAATTGCTTGCCTGATAAGATTAGTTATAGCACCTTGT
TAAACGGGTTGTTGAAATGGGGGAAAATAAGGCCAGCAGTGAGCATTTTC
AAGGAAATGGTGAGATTTGGATTTGAGGCTGATGAGAGGATGATGAATAG
TCTGCTAAGAGGGCTATGCATGAAATCATGGGAAGAGAAGGACTTGTTAC
AAGATGCCTATCCAGTGTTTGAGAAAATGACTAAAAAAGTTTCTGTCACG
TACCCTGGAACGTATGGAATAGTGATCCGAACTCTTGGCAAGGGAAAGAA
AACTGATGAGGCTTTGATCCATTTGCATCATGCGATTGAAATGGGTCATA
TTCCTCCGACTATCACCTTTTACAATGTGAATTTCAACCCCTTCGTTGTT
GAAGGAAAGATTGATCAATGCTTGATGCTCTTTTTCCTCACGTATGACCT
TGTGCTAAATTCCTAGCGAACTTCGTAAGAACTGCTGTTCCAAAGCTAGC
CCACCTGGAAAAGATTTAACCCATGCTTGTCCTCTATATGTGTCGCTTGA
TTGAAAACAGGTTGTCTCCCCCCTTAGGAAAACCCTCGCAAAGATACCTT
AACTTCCTCTGTCTCATAAAAAAATGTCAAACTCTGATTGGTCAATACGA
CAATACAATTTTATCGCGATTATTTAAATCTCTTTTTGCCCTTGATCAAT
AAAAATAAACTAATAACATCACCCCCTCTTCCTGTCGTATTCATCGCTTA
ATTATATAGATACATCTTAATATCCTTATTCTCATTATCATATCTTAATT
ATATCCTTATCTACTACGTTAGTTATATCCGTATTTATATAGTAAACAAT
ATTAGTTTTA
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