EY711218

Overview
NameEY711218
Unique NameEY711218
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length887
Libraries
Library NameType
Sweet orange fruit, development stadium (3 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY711218 vs. ExPASy Swiss-Prot
Match: CDC16_MOUSE (Cell division cycle protein 16 homolog OS=Mus musculus GN=Cdc16 PE=2 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 1.982e-16
Identity = 74/259 (28.57%), Postives = 116/259 (44.79%), Query Frame = 2
Query:   68 YLAAKCLEELKEWEQCLSMLGDAKVDEDGN-----VYDTKDSNVMYLDKDGEDREINISSAICFLRGKAYEALENRAQARLWYKAAIKADPLCYEALECLIENHMLTC----XXXXXXXXXXXXXXXDGWLSSFYSCLIKKYDKENVVEAKFREIEKEKCDXXXXXXXXXXXXKNNTDLLACKAE-YYHQCGEYKKCFELTSVLLEKTLSI*NVPSCTLAAAMELGTSNDLYLMGCNLGEDILKR-LCMVAVGCTYIVI 811
            YLAA+C    KE +Q L +L    ++E  N      Y   D+       D E  + +I S+IC LRGK Y+AL+NR  A   YK A+K D  C+EA + L  +HMLT                       L   +   +KKY+K +        +  E  D            + N D++   AE +Y+ C ++K C++LTS ++EK     N     +   +EL  +N+L+ +   L +      +   AVGC Y+++
Sbjct:   74 YLAARCHYAAKEHQQALDILD---MEEPINRRLFEKYLKDDNGSRDPSSDWEMSQSSIKSSICLLRGKIYDALDNRTLATYSYKEALKLDVYCFEAFDLLTSHHMLTAQEEKELLDSLPLNKLCAEEQELLRFVFENKLKKYNKPS------ETVIPESVD----------GLQENLDVVVSLAERHYYNC-DFKMCYKLTSTVMEKDPFHANCLPVHIGTLVELNKANELFYLSHKLVDLYPSNPVSWFAVGCYYLMV 312          
BLAST of EY711218 vs. ExPASy Swiss-Prot
Match: CDC16_HUMAN (Cell division cycle protein 16 homolog OS=Homo sapiens GN=CDC16 PE=1 SV=2)

HSP 1 Score: 86.6557 bits (213), Expect = 1.982e-16
Identity = 74/259 (28.57%), Postives = 117/259 (45.17%), Query Frame = 2
Query:   68 YLAAKCLEELKEWEQCLSMLGDAKVDEDGNV-----YDTKDSNVMYLDKDGEDREINISSAICFLRGKAYEALENRAQARLWYKAAIKADPLCYEALECLIENHMLTC----XXXXXXXXXXXXXXXDGWLSSFYSCLIKKYDKENVVEAKFREIEKEKCDXXXXXXXXXXXXKNNTDLLACKAE-YYHQCGEYKKCFELTSVLLEKTLSI*NVPSCTLAAAMELGTSNDLYLMGCNLGEDILKR-LCMVAVGCTYIVI 811
            YLAA+C    KE +Q L +L    ++E  N      Y   +S       D E  + +I S+IC LRGK Y+AL+NR  A   YK A+K D  C+EA + L  +HMLT                       L   +   +KKY+K +        +  E  D            + N D++   AE +Y+ C ++K C++LTSV++EK     +     +   +EL  +N+L+ +   L +      +   AVGC Y+++
Sbjct:   74 YLAARCHYAAKEHQQALDVLD---MEEPINKRLFEKYLKDESGFKDPSSDWEMSQSSIKSSICLLRGKIYDALDNRTLATYSYKEALKLDVYCFEAFDLLTSHHMLTAQEEKELLESLPLSKLCNEEQELLRFLFENKLKKYNKPS------ETVIPESVD----------GLQENLDVVVSLAERHYYNC-DFKMCYKLTSVVMEKDPFHASCLPVHIGTLVELNKANELFYLSHKLVDLYPSNPVSWFAVGCYYLMV 312          
BLAST of EY711218 vs. ExPASy Swiss-Prot
Match: CUT9_SCHPO (Anaphase-promoting complex subunit cut9 OS=Schizosaccharomyces pombe GN=cut9 PE=1 SV=2)

HSP 1 Score: 81.2629 bits (199), Expect = 8.326e-15
Identity = 69/257 (26.85%), Postives = 112/257 (43.58%), Query Frame = 2
Query:   68 YLAAKCLEELKEWEQCLSMLGDAKVDEDGNVYDTKDSNVMYLDKDGEDREINISSAICFLRGKAYEALENRAQARLWYKAAIKADPLCYEALECLIENHMLTCXXXXXXXXXXXXXXXD----GWLSSFYSCLIKKYDKENVVEAKFREIEKEKCDXXXXXXXXXXXXKNNTDLLACKAEYYHQCGEYKKCFELTSVLLEKTLSI*NVPSCTLAAAMELGTSNDLYLMGCNL-GEDILKRLCMVAVGCTYIVIRILS 823
            YLAA CL +L +W+  L++LG+          D K++N + +   G    I + +++C+LRG+ Y  L N  +A+  YK A+  D  CYEA + L+ NH+LT                      +L S Y   + K   E+    + R  E                 + ++DLL CKA+       +     +T+ +LE      +V    LA+  E G  N LYL+  +L      K +  +AVG  Y+ +  +S
Sbjct:  154 YLAAFCLVKLYDWQGALNLLGETNPFRK----DEKNANKLLMQDGG----IKLEASMCYLRGQVYTNLSNFDRAKECYKEALMVDAKCYEAFDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHED----ELRRAE--------DYLSSINGLEKSSDLLLCKADTLFVRSRFIDVLAITTKILEIDPYNLDVYPLHLASLHESGEKNKLYLISNDLVDRHPEKAVTWLAVGIYYLCVNKIS 390          
The following BLAST results are available for this feature:
BLAST of EY711218 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 3
Match NameE-valueIdentityDescription
CDC16_MOUSE1.982e-1628.57Cell division cycle protein 16 homolog OS=Mus musc... [more]
CDC16_HUMAN1.982e-1628.57Cell division cycle protein 16 homolog OS=Homo sap... [more]
CUT9_SCHPO8.326e-1526.85Anaphase-promoting complex subunit cut9 OS=Schizos... [more]
back to top
Properties
Property NameValue
Genbank descriptionCS00-C3-702-005-C02-CT.F Sweet orange fruit, development stadium (3 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY711218 ID=EY711218; Name=EY711218; organism=Citrus sinensis; type=EST; length=887bp
CCACGCGTCCGCGGACGCGTGGGCGGACGCGTGGGCGAAAATTGTGCTCC
GTGACCTACGCTTCCATTACTTGGCTGCTAAGTGTCTGGAGGAACTGAAG
GAGTGGGAACAGTGTTTGTCGATGCTCGGTGATGCTAAGGTTGATGAAGA
TGGGAATGTTTATGACACAAAGGATAGCAATGTCATGTACTTAGATAAAG
ATGGGGAAGACAGAGAAATCAATATCTCTTCAGCTATATGCTTTTTGAGA
GGCAAAGCATATGAAGCCTTGGAAAATCGTGCCCAAGCTCGGCTGTGGTA
TAAAGCAGCAATCAAAGCTGATCCTTTGTGTTATGAGGCTTTGGAATGCC
TTATTGAAAATCACATGCTAACATGCGAGCTAGAAACAAGTTTACTTTCG
TCATTGGAATTTGGCTCTGAAGATGGATGGCTTTCTTCATTTTACTCATG
CTTGATAAAAAAGTATGACAAGGAGAATGTTGTAGAAGCCAAATTTAGAG
AGATTGAGAAAGAAAAATGCGATAGTGTCCATTCGAGCTCGTCCCTCTCA
CACAGTCTAAAAAACAATACTGATCTTTTAGCCTGCAAAGCTGAGTACTA
TCATCAGTGTGGAGAATACAAAAAATGCTTTGAACTAACTTCTGTATTAC
TTGAGAAAACCCTTTCCATCTGAAATGTACCTTCCTGCACTTTAGCTGCT
GCTATGGAACTTGGAACTTCAAATGACCTTTATCTGATGGGATGCAATTT
AGGGGAAGATATCCTCAAAAGGCTTTGCATGGTTGCAGTTGGTTGCACCT
ATATTGTTATAAGAATATTGTCATCCCCACCTTTTTTCGCAAGGTACAAA
CTTGATGGAACCTCCCCCCGCTTGGAAAGGTTGGAAT
back to top