EY686932

Overview
NameEY686932
Unique NameEY686932
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length822
Libraries
Library NameType
Sweet orange bark, greenhouse plantcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY686932 vs. ExPASy Swiss-Prot
Match: LYM1_ARATH (LysM domain-containing GPI-anchored protein 1 OS=Arabidopsis thaliana GN=At1g21880 PE=1 SV=1)

HSP 1 Score: 308.145 bits (788), Expect = 3.712e-83
Identity = 144/197 (73.10%), Postives = 165/197 (83.76%), Query Frame = 3
Query:   12 DNSLPAVYLSYVVKDVDTLAGIAARYRTTLTDLMNVNAMGSTAVKAGDILAVPLPACATNFPRYALDHGLIVPNGSYAITASHCVQCSCGPGNLNLYCMPASLAVSCSSMQCKNSNLMLGNVTTQRSSAGCNVTSCSYGGFVNGTIVTMLSTSLQPRCPGPQQFPPLIAPPSSVTRDSTYAPSPAPQSDGAGSAGAT 602
            DNSLPAVYLSYVVK++DTL GIA RY TT+TDLMNVNAMG+  V +GDILAVPL ACA+ FPRYA D GLIVPNGSYA+ A HCVQCSC  G+ NLYC PASLAVSCSSMQC+NSNLMLGN+T Q++SAGCNVT+C Y G  NGTI+TML+ SLQPRCPGPQQF PL+APP +V RD  YAP+P+P  DG GS  ++
Sbjct:  168 DNSLPAVYLSYVVKEIDTLVGIARRYSTTITDLMNVNAMGAPDVSSGDILAVPLSACASKFPRYASDFGLIVPNGSYALAAGHCVQCSCALGSRNLYCEPASLAVSCSSMQCRNSNLMLGNITVQQTSAGCNVTTCDYNGIANGTILTMLTRSLQPRCPGPQQFAPLLAPPDTVPRDVMYAPAPSPDFDGPGSIASS 364          
BLAST of EY686932 vs. ExPASy Swiss-Prot
Match: LYM3_ARATH (LysM domain-containing GPI-anchored protein 2 OS=Arabidopsis thaliana GN=At1g77630 PE=1 SV=1)

HSP 1 Score: 274.633 bits (701), Expect = 4.548e-73
Identity = 123/186 (66.13%), Postives = 157/186 (84.41%), Query Frame = 3
Query:   12 DNSLPAVYLSYVVKDVDTLAGIAARYRTTLTDLMNVNAMGSTAVKAGDILAVPLPACATNFPRYALDHGLIVPNGSYAITASHCVQCSCGPGNLNLYCMPASLAVSCSSMQCKNSNLMLGNVTTQRSSAGCNVTSCSYGGFVNGTIVTMLSTSLQPRCPGPQQFPPLIAPPSSVTRDSTYAPSPAP 569
            D SLPA+YLSYVV+ +DT+AGIA R+ T++TDL NVNAMG+  +  GDILAVPL AC++NFP+YA D+GLI+PNGSYA+TA HCVQCSC  G+ ++YC PAS++VSCSSM+C+NSN MLGN+T+Q+SS+GC +T+CSY GF +GTI+T LS SLQPRCPGPQQ  PLIAPP +V ++  Y PSP+P
Sbjct:  165 DESLPALYLSYVVRGIDTMAGIAKRFSTSVTDLTNVNAMGAPDINPGDILAVPLLACSSNFPKYATDYGLIIPNGSYALTAGHCVQCSCVLGSRSMYCEPASISVSCSSMRCRNSNFMLGNITSQQSSSGCKLTTCSYNGFASGTILTTLSMSLQPRCPGPQQLAPLIAPPDNVPKELMYLPSPSP 350          
BLAST of EY686932 vs. ExPASy Swiss-Prot
Match: CEBIP_ORYSJ (Chitin elicitor-binding protein OS=Oryza sativa subsp. japonica GN=CEBIP PE=1 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 2.996e-16
Identity = 52/157 (33.12%), Postives = 82/157 (52.23%), Query Frame = 3
Query:   30 VYLSYVVKDVDTLAGIAARYRTTLTDLMNVNAMGS-TAVKAGDILAVPLPACATNFPRYALDHGL-IVPNGSYAITASHCVQCSCGPGNLNLYCMPASLAVSCSSMQCKNSNLMLGNVTTQRSSAGCNVTSCSYGGFVNGT---IVTMLSTSLQPRC 485
            ++L+Y V   +  + IAA+Y  T + L+  N +   T ++ G IL VPLP C ++    + DH L ++P+G+Y  TA +C++CSC      L C  A     C S+   N  L LG    + +  GC  T+C+Y G+ N +   I T L+T+    C
Sbjct:  173 MHLAYSVGKGENTSAIAAKYGVTESTLLTRNKIDDPTKLQMGQILDVPLPVCRSSISDTSADHNLMLLPDGTYGFTAGNCIRCSCSSTTYQLNC-TAVQNKGCPSVPLCNGTLKLG----ETNGTGCGSTTCAYSGYSNSSSLIIQTSLATNQTTAC 324          
BLAST of EY686932 vs. ExPASy Swiss-Prot
Match: LYM2_ARATH (LysM domain-containing GPI-anchored protein 2 OS=Arabidopsis thaliana GN=At2g17120 PE=1 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 5.848e-12
Identity = 57/173 (32.95%), Postives = 83/173 (47.98%), Query Frame = 3
Query:   15 NSLPAVYLSYVVKDVDTLAGIAARYRTTLTDLMNVNAM-GSTAVKAGDILAVPLPACATNFPRYALDHGLIVPNGSYAITASHCVQCSCGP-GNLNLYCMPASLAVSCSSMQCKNSNLMLGNVTTQRSSAGCNVT-----SCSYGGFVNGTIVTMLSTSLQPRCP---GPQQF 503
            N    V+ ++VVK   +L  IAA++ T  T L  +N + G + + A   L VPL AC+++  + +LD  L++ N SY  TA++CV+C+C    N  L C         SS + K SN       +Q   A  N +      C Y G+ N TI T  S    P CP   GP  +
Sbjct:  165 NGEDVVHYAHVVKLGSSLGEIAAQFGTDNTTLAQLNGIIGDSQLLADKPLDVPLKACSSSVRKDSLDAPLLLSNNSYVFTANNCVKCTCDALKNWTLSCQ--------SSSEIKPSNWQTCPPFSQCDGALLNASCRQPRDCVYAGYSNQTIFTTAS----PACPDSAGPDNY 325          
The following BLAST results are available for this feature:
BLAST of EY686932 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 4
Match NameE-valueIdentityDescription
LYM1_ARATH3.712e-8373.10LysM domain-containing GPI-anchored protein 1 OS=A... [more]
LYM3_ARATH4.548e-7366.13LysM domain-containing GPI-anchored protein 2 OS=A... [more]
CEBIP_ORYSJ2.996e-1633.12Chitin elicitor-binding protein OS=Oryza sativa su... [more]
LYM2_ARATH5.848e-1232.95LysM domain-containing GPI-anchored protein 2 OS=A... [more]
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Properties
Property NameValue
Genbank descriptionCS00-C2-003-030-H07-CT.F Sweet orange bark, greenhouse plant Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY686932 ID=EY686932; Name=EY686932; organism=Citrus sinensis; type=EST; length=822bp
CCACGCGTCCGGATAATTCGTTGCCGGCTGTTTACTTGAGTTATGTTGTG
AAAGATGTGGACACGCTTGCGGGAATTGCGGCTAGGTATAGGACTACGCT
TACTGATTTGATGAATGTTAATGCTATGGGAAGTACTGCTGTCAAGGCTG
GTGATATTCTTGCTGTTCCATTGCCAGCCTGTGCAACTAATTTTCCTAGA
TATGCTTTGGATCATGGATTGATTGTACCAAATGGGAGCTACGCAATCAC
AGCAAGCCACTGTGTGCAATGCAGTTGTGGGCCAGGGAATCTCAATTTGT
ACTGCATGCCTGCTTCATTGGCAGTTTCTTGCTCAAGCATGCAATGTAAA
AATAGTAACCTCATGCTTGGGAATGTTACCACTCAACGGAGTAGTGCTGG
GTGTAATGTCACTTCGTGTAGTTATGGTGGTTTTGTCAATGGCACCATTG
TCACTATGTTGTCTACATCTCTTCAACCTCGATGTCCAGGACCCCAGCAA
TTTCCTCCTCTTATAGCTCCACCATCATCAGTAACCAGAGATTCCACATA
TGCTCCATCACCTGCCCCGCAGTCAGATGGAGCTGGGTCAGCTGGAGCAA
CAACCCCCAAGTCTTCTGTGGTGCCATCATCTGGGTCAACCCCTGGGTTG
CCCCCTGCAGGCGGTCCTAGCGGGGAGGGGTCGTCCTGTTGCCTCTAAAC
AAATTCTTTATCCACTTTTCCCCCCTCGTTCGAGGGGGACTTGATTGGGC
AAGTCGTCCGGCCCTATTTCAAAGAAAATCCGGTTCCCCCCGCCNTCCCT
GCAAGGCGGGGTTTTTTGCCAA
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