EY710929

Overview
NameEY710929
Unique NameEY710929
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length834
Libraries
Library NameType
Sweet orange fruit, development stadium (3 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY710929 vs. ExPASy Swiss-Prot
Match: PABP2_ARATH (Polyadenylate-binding protein 2 OS=Arabidopsis thaliana GN=PAB2 PE=1 SV=1)

HSP 1 Score: 170.629 bits (431), Expect = 9.484e-42
Identity = 106/201 (52.74%), Postives = 133/201 (66.17%), Query Frame = 2
Query:   11 EQQLVPGMRP------NYFVPMVXXXXXXXXXXXXXXXTGPMQQAQQPIPLMQPRMLPRGRIYRYPPGCN-IPDVPVAGVPGGMLPGPYDIGGMPFRDAAFSQPMQTGALASALANASPEQQRTLLGENLYPLVDQLEHDNAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMEVLRNVAQQQATGPSPTDRVASLSLN 592
            +QQLVPGMRP      ++F+PMV                G +Q +QQ  P+MQ +M PRGR++RYP G     DVP           PYD+G         + P+  GALAS L+NA+PEQQRT+LGE LYPLV+Q+E ++AAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAM+VLR+VA   A     T+++ASL+L+
Sbjct:  456 QQQLVPGMRPGGGPVPSFFMPMVQPQQQRPGGGRRP---GGIQHSQQQNPMMQQQMHPRGRMFRYPQGRGGSGDVP-----------PYDMGN--------NMPLTIGALASNLSNATPEQQRTMLGEVLYPLVEQVEAESAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMDVLRSVAAGGA-----TEQLASLNLS 629          
BLAST of EY710929 vs. ExPASy Swiss-Prot
Match: PABP5_ARATH (Polyadenylate-binding protein 5 OS=Arabidopsis thaliana GN=PAB5 PE=1 SV=2)

HSP 1 Score: 108.612 bits (270), Expect = 4.426e-23
Identity = 73/181 (40.33%), Postives = 94/181 (51.93%), Query Frame = 2
Query:   17 QLVPGMRPNYFVPMVXXXXXXXXXXXXXXXTGPMQQAQQPIPLMQPRMLPRGRIYRYPPGC-NIPDVPVAGVPGGMLPGPYDIGGMPFRDAAFSQ---PMQTGALASALANASPEQQRTLLGENLYPLVDQLEHDNAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMEVLRNVAQQQA 547
            Q +PGMRP    P                  G  + A       Q + + +    R+  G  N  +   A  P G++P P +           S    P+    LAS LA ASP++   +LG++LYPLV+Q E  NAAKVTGMLLEMDQ E+LHLLESPEALKAKV+EA++VLR  A   A
Sbjct:  474 QFMPGMRPGAGPPNFMMPFPLQRQTQPGPRVGFRRGANNMQQQFQQQQMLQQNASRFMGGAGNRRNGMEASAPQGIIPLPLNASANSHNAPQRSHKPTPLTISKLASDLALASPDKHPRMLGDHLYPLVEQQEPANAAKVTGMLLEMDQAEILHLLESPEALKAKVSEALDVLRRSADPAA 654          
BLAST of EY710929 vs. ExPASy Swiss-Prot
Match: PABP3_ARATH (Polyadenylate-binding protein 3 OS=Arabidopsis thaliana GN=PAB3 PE=2 SV=1)

HSP 1 Score: 101.293 bits (251), Expect = 7.066e-21
Identity = 77/212 (36.32%), Postives = 105/212 (49.53%), Query Frame = 2
Query:   11 EQQLVPGMRP-----NYFVPMVXXXXXXXXXXXXXXXTGPMQQAQQPIPLMQPRMLPRGRIYRYP-PGCNIPDVPVAG-------VPGGMLPG----PYDIGGMPFRDAAFSQPMQTGALASALANASPEQQRTLLGENLYPLVDQLEHDNAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMEVLRNVAQQQATGPSPTDRVASLSLND 595
            + Q +PGMRP     N+ VP                 TGP    ++    +Q  +  +  ++R P PG    +    G       VP G+LP     P D   +  + A     +    L S+LA+ASP  +  +LGE LYPLV++ E  + AKVTGMLLEMDQ E+LHL+ESPEALK+KV+EA++VLR           PTD     S  D
Sbjct:  468 QPQFMPGMRPGSGPGNFIVPY---------PLQRQPQTGPRMGFRRGATNVQQHIQQQQLMHRNPSPGMRYMNGASNGRNGMDSSVPQGILPPIIPLPIDASSISHQKAPL---LPISKLTSSLASASPADRTRMLGEQLYPLVERHEPLHVAKVTGMLLEMDQAEILHLMESPEALKSKVSEALDVLR-------LSVDPTDHDLGFSTTD 660          
BLAST of EY710929 vs. ExPASy Swiss-Prot
Match: PABP_USTMA (Polyadenylate-binding protein, cytoplasmic and nuclear OS=Ustilago maydis GN=PAB1 PE=3 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 8.638e-19
Identity = 62/142 (43.66%), Postives = 78/142 (54.93%), Query Frame = 2
Query:  140 PLMQPRMLPRGRIYRYPPGCNIPDVPVAGVP---GGMLPGPYDIGGMPFRDAAFSQPMQTGAL-ASALANASPEQQRTLLGENLYPLVDQLEHDNAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMEVLRNVAQQQATG 553
            P   PR  P       PP    P   V G P   G  +PG     G   R A   +  Q GAL A+ALA ASPE+Q+ +LGE +YP V   + + A K+TGM+LE+  TE+LHLLE  EAL AKV EA+EVL+   Q  + G
Sbjct:  496 PARPPRGAPNAAGGPAPPAGARPPTGVNGAPRPAGQPVPGQPMPRGPAARPAGRPEADQPGALTAAALAKASPEEQKQMLGEAIYPKVAASQPELAGKLTGMILELPVTELLHLLEESEALDAKVNEALEVLKEYQQNDSAG 637          
BLAST of EY710929 vs. ExPASy Swiss-Prot
Match: PABP_CRYNE (Polyadenylate-binding protein, cytoplasmic and nuclear OS=Cryptococcus neoformans GN=PAB1 PE=3 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 2.352e-16
Identity = 56/126 (44.44%), Postives = 72/126 (57.14%), Query Frame = 2
Query:  188 PPGCNIPDVPVA-----------GVPGGMLPGPYDIGG-MPFRDAAFSQPM-QTGAL-ASALANASPEQQRTLLGENLYPLVDQLEHDNAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMEVL 523
            P G  IP  P A           G P G+  G    GG MP R    + P  Q G L A +LA A+P +Q+ +LGE LYPL+ + + + A K+TGMLLEMD  E+LHL+ES  AL+ KV EA+ VL
Sbjct:  516 PGGARIPAAPNANGPRNGGPSPVGAPQGLPAGSIPRGGQMPARPHEQAAPAPQAGRLDAQSLARAAPAEQKQMLGEALYPLIHETQPELAGKITGMLLEMDNAELLHLVESQPALQEKVDEALRVL 641          
BLAST of EY710929 vs. ExPASy Swiss-Prot
Match: PABP_DROME (Polyadenylate-binding protein OS=Drosophila melanogaster GN=pAbp PE=1 SV=3)

HSP 1 Score: 82.8037 bits (203), Expect = 2.601e-15
Identity = 37/70 (52.86%), Postives = 56/70 (80.00%), Query Frame = 2
Query:  317 LASALANASPEQQRTLLGENLYPLVDQLEHDNAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMEVLR 526
            +AS LANA P++Q+ +LGE LYP+++ +  + A K+TGMLLE++ +E+LH++E  EALKAKV EA+ VL+
Sbjct:  556 IASLLANAKPQEQKQILGERLYPMIEHMHANLAGKITGMLLEIENSELLHMIEDQEALKAKVEEAVAVLQ 625          
BLAST of EY710929 vs. ExPASy Swiss-Prot
Match: PABP_ASPCL (Polyadenylate-binding protein, cytoplasmic and nuclear OS=Aspergillus clavatus GN=pab1 PE=3 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 3.397e-15
Identity = 56/139 (40.29%), Postives = 75/139 (53.96%), Query Frame = 2
Query:  167 RGRIYRYPPGCNIPDVPVAGVPGGMLPGPYDIGGM----PFRDAAFSQPMQTGAL-ASALANASPEQQRTLLGENLYPLVDQLEHDNAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMEVLRNVAQQQATGPSPTD 568
            RG++   P G  +      G  GG   GP   GG       + AA  +    GAL A AL  A+P QQ+ +LGE LYP +   + + A K+TGMLLEMD TE+L LLE  +AL+AKV EA+ V     + +  G +P D
Sbjct:  599 RGQVPGMPMGQGMRGPGYQG-RGGPQGGPRPQGGRGQNAAAQPAAGREEAPAGALTAQALNAAAPPQQKQMLGEALYPKIQAQQPELAGKITGMLLEMDNTELLGLLEDDDALRAKVDEALSVYDEYMKNKGEGEAPAD 736          
BLAST of EY710929 vs. ExPASy Swiss-Prot
Match: EPAB_XENTR (Embryonic polyadenylate-binding protein OS=Xenopus tropicalis GN=epabp PE=2 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 3.397e-15
Identity = 38/69 (55.07%), Postives = 56/69 (81.16%), Query Frame = 2
Query:  320 ASALANASPEQQRTLLGENLYPLVDQLEHDNAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMEVLR 526
            AS+LA+A P++Q+ +LGE LYPL+ ++    A K+TGMLLE+D +E+LH+LESPE+L +KV EA+ VL+
Sbjct:  544 ASSLASAPPQEQKQMLGERLYPLIHEMHPTLAGKITGMLLEIDNSELLHMLESPESLHSKVEEAVAVLQ 612          
BLAST of EY710929 vs. ExPASy Swiss-Prot
Match: PABP1_RAT (Polyadenylate-binding protein 1 OS=Rattus norvegicus GN=Pabpc1 PE=2 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 1.291e-14
Identity = 37/69 (53.62%), Postives = 55/69 (79.71%), Query Frame = 2
Query:  320 ASALANASPEQQRTLLGENLYPLVDQLEHDNAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMEVLR 526
            AS LA+A P++Q+ +LGE L+PL+  +    A K+TGMLLE+D +E+LH+LESPE+L++KV EA+ VL+
Sbjct:  547 ASMLASAPPQEQKQMLGERLFPLIQAMHPSLAGKITGMLLEIDNSELLHMLESPESLRSKVDEAVAVLQ 615          
BLAST of EY710929 vs. ExPASy Swiss-Prot
Match: PABP1_MOUSE (Polyadenylate-binding protein 1 OS=Mus musculus GN=Pabpc1 PE=1 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 1.291e-14
Identity = 37/69 (53.62%), Postives = 55/69 (79.71%), Query Frame = 2
Query:  320 ASALANASPEQQRTLLGENLYPLVDQLEHDNAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMEVLR 526
            AS LA+A P++Q+ +LGE L+PL+  +    A K+TGMLLE+D +E+LH+LESPE+L++KV EA+ VL+
Sbjct:  547 ASMLASAPPQEQKQMLGERLFPLIQAMHPSLAGKITGMLLEIDNSELLHMLESPESLRSKVDEAVAVLQ 615          
The following BLAST results are available for this feature:
BLAST of EY710929 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 30
Match NameE-valueIdentityDescription
PABP2_ARATH9.484e-4252.74Polyadenylate-binding protein 2 OS=Arabidopsis tha... [more]
PABP5_ARATH4.426e-2340.33Polyadenylate-binding protein 5 OS=Arabidopsis tha... [more]
PABP3_ARATH7.066e-2136.32Polyadenylate-binding protein 3 OS=Arabidopsis tha... [more]
PABP_USTMA8.638e-1943.66Polyadenylate-binding protein, cytoplasmic and nuc... [more]
PABP_CRYNE2.352e-1644.44Polyadenylate-binding protein, cytoplasmic and nuc... [more]
PABP_DROME2.601e-1552.86Polyadenylate-binding protein OS=Drosophila melano... [more]
PABP_ASPCL3.397e-1540.29Polyadenylate-binding protein, cytoplasmic and nuc... [more]
EPAB_XENTR3.397e-1555.07Embryonic polyadenylate-binding protein OS=Xenopus... [more]
PABP1_RAT1.291e-1453.62Polyadenylate-binding protein 1 OS=Rattus norvegic... [more]
PABP1_MOUSE1.291e-1453.62Polyadenylate-binding protein 1 OS=Mus musculus GN... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C3-702-001-G07-CT.F Sweet orange fruit, development stadium (3 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY710929 ID=EY710929; Name=EY710929; organism=Citrus sinensis; type=EST; length=834bp
CCACGCGTCCGAGCAGCAGCTGGTTCCGGGAATGAGGCCAAACTATTTTG
TTCCAATGGTCCAGCCAGGTCAGCAGAACCAGCGCCCAGGAGGTAGACGT
TCTGGAACTGGCCCCATGCAACAAGCACAACAACCAATTCCACTTATGCA
GCCGCGGATGCTTCCAAGAGGTCGCATCTACCGATACCCTCCTGGTTGCA
ACATACCAGATGTTCCCGTTGCTGGTGTTCCTGGAGGCATGCTTCCTGGT
CCTTACGACATTGGTGGAATGCCGTTCAGAGATGCTGCATTTTCACAGCC
TATGCAAACAGGGGCTTTGGCATCTGCCCTTGCTAATGCGTCTCCTGAGC
AACAGAGGACGTTACTGGGAGAAAATCTATACCCACTTGTAGATCAATTG
GAGCATGATAACGCTGCAAAAGTAACAGGCATGCTTTTAGAGATGGACCA
GACTGAAGTTTTGCACTTGCTAGAGTCGCCAGAAGCCTTGAAAGCGAAAG
TCGCAGAGGCAATGGAAGTATTAAGGAATGTAGCTCAGCAGCAGGCCACC
GGCCCAAGCCCAACTGATCGGGTGGCCTCACTGTCGCTGAATGACAACAT
TGTTTCTTGAGTTTTAGGCACCCATCTATGCTAGTAATATAGCCTAAGCA
CTTAATTTTGGAATAAAATTTGGTGTGGGGTTGAGTCTATTTGCGATAGT
TTGCTGGAGAAAGTCGGGGGAATACTTTGGTACTGAACTTTCTTTGTAGC
GCGACCATATAAGATCAGCGCAATTTTGCCCAAGTTATGCCAGAATTAAT
TAAATTTGCTTGATCATCAAAAAAAAAAAAAAGG
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