EY710929
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of EY710929 vs. ExPASy Swiss-Prot
Match: PABP2_ARATH (Polyadenylate-binding protein 2 OS=Arabidopsis thaliana GN=PAB2 PE=1 SV=1) HSP 1 Score: 170.629 bits (431), Expect = 9.484e-42 Identity = 106/201 (52.74%), Postives = 133/201 (66.17%), Query Frame = 2 Query: 11 EQQLVPGMRP------NYFVPMVXXXXXXXXXXXXXXXTGPMQQAQQPIPLMQPRMLPRGRIYRYPPGCN-IPDVPVAGVPGGMLPGPYDIGGMPFRDAAFSQPMQTGALASALANASPEQQRTLLGENLYPLVDQLEHDNAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMEVLRNVAQQQATGPSPTDRVASLSLN 592 +QQLVPGMRP ++F+PMV G +Q +QQ P+MQ +M PRGR++RYP G DVP PYD+G + P+ GALAS L+NA+PEQQRT+LGE LYPLV+Q+E ++AAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAM+VLR+VA A T+++ASL+L+ Sbjct: 456 QQQLVPGMRPGGGPVPSFFMPMVQPQQQRPGGGRRP---GGIQHSQQQNPMMQQQMHPRGRMFRYPQGRGGSGDVP-----------PYDMGN--------NMPLTIGALASNLSNATPEQQRTMLGEVLYPLVEQVEAESAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMDVLRSVAAGGA-----TEQLASLNLS 629
BLAST of EY710929 vs. ExPASy Swiss-Prot
Match: PABP5_ARATH (Polyadenylate-binding protein 5 OS=Arabidopsis thaliana GN=PAB5 PE=1 SV=2) HSP 1 Score: 108.612 bits (270), Expect = 4.426e-23 Identity = 73/181 (40.33%), Postives = 94/181 (51.93%), Query Frame = 2 Query: 17 QLVPGMRPNYFVPMVXXXXXXXXXXXXXXXTGPMQQAQQPIPLMQPRMLPRGRIYRYPPGC-NIPDVPVAGVPGGMLPGPYDIGGMPFRDAAFSQ---PMQTGALASALANASPEQQRTLLGENLYPLVDQLEHDNAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMEVLRNVAQQQA 547 Q +PGMRP P G + A Q + + + R+ G N + A P G++P P + S P+ LAS LA ASP++ +LG++LYPLV+Q E NAAKVTGMLLEMDQ E+LHLLESPEALKAKV+EA++VLR A A Sbjct: 474 QFMPGMRPGAGPPNFMMPFPLQRQTQPGPRVGFRRGANNMQQQFQQQQMLQQNASRFMGGAGNRRNGMEASAPQGIIPLPLNASANSHNAPQRSHKPTPLTISKLASDLALASPDKHPRMLGDHLYPLVEQQEPANAAKVTGMLLEMDQAEILHLLESPEALKAKVSEALDVLRRSADPAA 654
BLAST of EY710929 vs. ExPASy Swiss-Prot
Match: PABP3_ARATH (Polyadenylate-binding protein 3 OS=Arabidopsis thaliana GN=PAB3 PE=2 SV=1) HSP 1 Score: 101.293 bits (251), Expect = 7.066e-21 Identity = 77/212 (36.32%), Postives = 105/212 (49.53%), Query Frame = 2 Query: 11 EQQLVPGMRP-----NYFVPMVXXXXXXXXXXXXXXXTGPMQQAQQPIPLMQPRMLPRGRIYRYP-PGCNIPDVPVAG-------VPGGMLPG----PYDIGGMPFRDAAFSQPMQTGALASALANASPEQQRTLLGENLYPLVDQLEHDNAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMEVLRNVAQQQATGPSPTDRVASLSLND 595 + Q +PGMRP N+ VP TGP ++ +Q + + ++R P PG + G VP G+LP P D + + A + L S+LA+ASP + +LGE LYPLV++ E + AKVTGMLLEMDQ E+LHL+ESPEALK+KV+EA++VLR PTD S D Sbjct: 468 QPQFMPGMRPGSGPGNFIVPY---------PLQRQPQTGPRMGFRRGATNVQQHIQQQQLMHRNPSPGMRYMNGASNGRNGMDSSVPQGILPPIIPLPIDASSISHQKAPL---LPISKLTSSLASASPADRTRMLGEQLYPLVERHEPLHVAKVTGMLLEMDQAEILHLMESPEALKSKVSEALDVLR-------LSVDPTDHDLGFSTTD 660
BLAST of EY710929 vs. ExPASy Swiss-Prot
Match: PABP_USTMA (Polyadenylate-binding protein, cytoplasmic and nuclear OS=Ustilago maydis GN=PAB1 PE=3 SV=1) HSP 1 Score: 94.3597 bits (233), Expect = 8.638e-19 Identity = 62/142 (43.66%), Postives = 78/142 (54.93%), Query Frame = 2 Query: 140 PLMQPRMLPRGRIYRYPPGCNIPDVPVAGVP---GGMLPGPYDIGGMPFRDAAFSQPMQTGAL-ASALANASPEQQRTLLGENLYPLVDQLEHDNAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMEVLRNVAQQQATG 553 P PR P PP P V G P G +PG G R A + Q GAL A+ALA ASPE+Q+ +LGE +YP V + + A K+TGM+LE+ TE+LHLLE EAL AKV EA+EVL+ Q + G Sbjct: 496 PARPPRGAPNAAGGPAPPAGARPPTGVNGAPRPAGQPVPGQPMPRGPAARPAGRPEADQPGALTAAALAKASPEEQKQMLGEAIYPKVAASQPELAGKLTGMILELPVTELLHLLEESEALDAKVNEALEVLKEYQQNDSAG 637
BLAST of EY710929 vs. ExPASy Swiss-Prot
Match: PABP_CRYNE (Polyadenylate-binding protein, cytoplasmic and nuclear OS=Cryptococcus neoformans GN=PAB1 PE=3 SV=1) HSP 1 Score: 86.2705 bits (212), Expect = 2.352e-16 Identity = 56/126 (44.44%), Postives = 72/126 (57.14%), Query Frame = 2 Query: 188 PPGCNIPDVPVA-----------GVPGGMLPGPYDIGG-MPFRDAAFSQPM-QTGAL-ASALANASPEQQRTLLGENLYPLVDQLEHDNAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMEVL 523 P G IP P A G P G+ G GG MP R + P Q G L A +LA A+P +Q+ +LGE LYPL+ + + + A K+TGMLLEMD E+LHL+ES AL+ KV EA+ VL Sbjct: 516 PGGARIPAAPNANGPRNGGPSPVGAPQGLPAGSIPRGGQMPARPHEQAAPAPQAGRLDAQSLARAAPAEQKQMLGEALYPLIHETQPELAGKITGMLLEMDNAELLHLVESQPALQEKVDEALRVL 641
BLAST of EY710929 vs. ExPASy Swiss-Prot
Match: PABP_DROME (Polyadenylate-binding protein OS=Drosophila melanogaster GN=pAbp PE=1 SV=3) HSP 1 Score: 82.8037 bits (203), Expect = 2.601e-15 Identity = 37/70 (52.86%), Postives = 56/70 (80.00%), Query Frame = 2 Query: 317 LASALANASPEQQRTLLGENLYPLVDQLEHDNAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMEVLR 526 +AS LANA P++Q+ +LGE LYP+++ + + A K+TGMLLE++ +E+LH++E EALKAKV EA+ VL+ Sbjct: 556 IASLLANAKPQEQKQILGERLYPMIEHMHANLAGKITGMLLEIENSELLHMIEDQEALKAKVEEAVAVLQ 625
BLAST of EY710929 vs. ExPASy Swiss-Prot
Match: PABP_ASPCL (Polyadenylate-binding protein, cytoplasmic and nuclear OS=Aspergillus clavatus GN=pab1 PE=3 SV=1) HSP 1 Score: 82.4185 bits (202), Expect = 3.397e-15 Identity = 56/139 (40.29%), Postives = 75/139 (53.96%), Query Frame = 2 Query: 167 RGRIYRYPPGCNIPDVPVAGVPGGMLPGPYDIGGM----PFRDAAFSQPMQTGAL-ASALANASPEQQRTLLGENLYPLVDQLEHDNAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMEVLRNVAQQQATGPSPTD 568 RG++ P G + G GG GP GG + AA + GAL A AL A+P QQ+ +LGE LYP + + + A K+TGMLLEMD TE+L LLE +AL+AKV EA+ V + + G +P D Sbjct: 599 RGQVPGMPMGQGMRGPGYQG-RGGPQGGPRPQGGRGQNAAAQPAAGREEAPAGALTAQALNAAAPPQQKQMLGEALYPKIQAQQPELAGKITGMLLEMDNTELLGLLEDDDALRAKVDEALSVYDEYMKNKGEGEAPAD 736
BLAST of EY710929 vs. ExPASy Swiss-Prot
Match: EPAB_XENTR (Embryonic polyadenylate-binding protein OS=Xenopus tropicalis GN=epabp PE=2 SV=1) HSP 1 Score: 82.4185 bits (202), Expect = 3.397e-15 Identity = 38/69 (55.07%), Postives = 56/69 (81.16%), Query Frame = 2 Query: 320 ASALANASPEQQRTLLGENLYPLVDQLEHDNAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMEVLR 526 AS+LA+A P++Q+ +LGE LYPL+ ++ A K+TGMLLE+D +E+LH+LESPE+L +KV EA+ VL+ Sbjct: 544 ASSLASAPPQEQKQMLGERLYPLIHEMHPTLAGKITGMLLEIDNSELLHMLESPESLHSKVEEAVAVLQ 612
BLAST of EY710929 vs. ExPASy Swiss-Prot
Match: PABP1_RAT (Polyadenylate-binding protein 1 OS=Rattus norvegicus GN=Pabpc1 PE=2 SV=1) HSP 1 Score: 80.4925 bits (197), Expect = 1.291e-14 Identity = 37/69 (53.62%), Postives = 55/69 (79.71%), Query Frame = 2 Query: 320 ASALANASPEQQRTLLGENLYPLVDQLEHDNAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMEVLR 526 AS LA+A P++Q+ +LGE L+PL+ + A K+TGMLLE+D +E+LH+LESPE+L++KV EA+ VL+ Sbjct: 547 ASMLASAPPQEQKQMLGERLFPLIQAMHPSLAGKITGMLLEIDNSELLHMLESPESLRSKVDEAVAVLQ 615
BLAST of EY710929 vs. ExPASy Swiss-Prot
Match: PABP1_MOUSE (Polyadenylate-binding protein 1 OS=Mus musculus GN=Pabpc1 PE=1 SV=1) HSP 1 Score: 80.4925 bits (197), Expect = 1.291e-14 Identity = 37/69 (53.62%), Postives = 55/69 (79.71%), Query Frame = 2 Query: 320 ASALANASPEQQRTLLGENLYPLVDQLEHDNAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMEVLR 526 AS LA+A P++Q+ +LGE L+PL+ + A K+TGMLLE+D +E+LH+LESPE+L++KV EA+ VL+ Sbjct: 547 ASMLASAPPQEQKQMLGERLFPLIQAMHPSLAGKITGMLLEIDNSELLHMLESPESLRSKVDEAVAVLQ 615 The following BLAST results are available for this feature:
BLAST of EY710929 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 30
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Sequences
The
following sequences are available for this feature:
EST sequence >EY710929 ID=EY710929; Name=EY710929; organism=Citrus sinensis; type=EST; length=834bpback to top |