EY710928

Overview
NameEY710928
Unique NameEY710928
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length903
Libraries
Library NameType
Sweet orange fruit, development stadium (3 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY710928 vs. ExPASy Swiss-Prot
Match: CCD4_ARATH (Probable carotenoid cleavage dioxygenase 4, chloroplastic OS=Arabidopsis thaliana GN=CCD4 PE=1 SV=1)

HSP 1 Score: 233.032 bits (593), Expect = 1.760e-60
Identity = 125/242 (51.65%), Postives = 153/242 (63.22%), Query Frame = 2
Query:   86 APSLFTNI-------IDRPLHPSVDPKHVFTGNFAPV-DELGPTECPVVDGKLPDSLTGTYIRNGPNPQHMPRGPLHFFEGDGMLHSMQLSKGRAIYSSRYVKTYKYKLERDAGGQIFPNVFSGFYGLVDMVQCVAST-ARVLMGHVNLKKGFGLANTXXXXXXXXXXXXGESDLPYIIKCTREGDIETLGRWDFDEELFASMTAHPKKT*P--QRDFCFQFSPFFPLILHLPFDAMG*AKR 778
            A +LFT +       ID P  PSVDPKHV + NFAPV DEL PT+C ++ G LP SL G YIRNGPNPQ +PRGP H F+GDGMLH++++  G+A   SRYVKTYKY +E+  G  + PNVFSGF G+   V   A T ARVL G  N   G GLANT            GESDLPY ++ T  GDIET+GR+DFD +L  SMTAHP KT P     F F++ P  P + +  FD+ G  +R
Sbjct:   82 ATALFTTVEDVINTFIDPPSRPSVDPKHVLSDNFAPVLDELPPTDCEIIHGTLPLSLNGAYIRNGPNPQFLPRGPYHLFDGDGMLHAIKIHNGKATLCSRYVKTYKYNVEKQTGAPVMPNVFSGFNGVTASVARGALTAARVLTGQYNPVNGIGLANTSLAFFSNRLFALGESDLPYAVRLTESGDIETIGRYDFDGKLAMSMTAHP-KTDPITGETFAFRYGPVPPFLTYFRFDSAGKKQR 322          
BLAST of EY710928 vs. ExPASy Swiss-Prot
Match: NCED5_ARATH (Probable 9-cis-epoxycarotenoid dioxygenase NCED5, chloroplastic OS=Arabidopsis thaliana GN=NCED5 PE=1 SV=1)

HSP 1 Score: 154.836 bits (390), Expect = 6.091e-37
Identity = 76/189 (40.21%), Postives = 109/189 (57.67%), Query Frame = 2
Query:  116 RPLHPSVDPKHVFTGNFAPVDELGPTECPVVDGKLPDSLTGTYIRNGPNPQHMPRGPLHFFEGDGMLHSMQLSKGRAIYSSRYVKTYKYKLERDAGGQIFPNVFSGFYGLVDMVQCVASTARVLMGHVNLKKGFGLANTXXXXXXXXXXXXGESDLPYIIKCTREGDIETLGRWDFDEELFASMTAHPK 682
            +PL  +VDP+H  +GN+APV E        VDGK+PD + G Y+RNG NP   P    H F+GDGM+H+++++ G A YS R+ +T +   E+  G  IFP      +G   + + +   AR L G +N K G G+AN              E DLPY ++ T  GD+ET+GR+DFD +L ++M AHPK
Sbjct:  101 KPLPKTVDPRHQISGNYAPVPEQSVKSSLSVDGKIPDCIDGVYLRNGANPLFEPVSGHHLFDGDGMVHAVKITNGDASYSCRFTETERLVQEKQLGSPIFPKAIGELHGHSGIARLMLFYARGLFGLLNHKNGTGVANAGLVYFHDRLLAMSEDDLPYQVRVTDNGDLETIGRFDFDGQLSSAMIAHPK 289          
BLAST of EY710928 vs. ExPASy Swiss-Prot
Match: NCED2_ARATH (9-cis-epoxycarotenoid dioxygenase NCED2, chloroplastic OS=Arabidopsis thaliana GN=NCED2 PE=2 SV=1)

HSP 1 Score: 145.591 bits (366), Expect = 3.695e-34
Identity = 72/197 (36.55%), Postives = 110/197 (55.84%), Query Frame = 2
Query:   92 SLFTNIIDRPLHPSVDPKHVFTGNFAPVDELGPTECPVVDGKLPDSLTGTYIRNGPNPQHMPRGPLHFFEGDGMLHSMQLSKGRAIYSSRYVKTYKYKLERDAGGQIFPNVFSGFYGLVDMVQCVASTARVLMGHVNLKKGFGLANTXXXXXXXXXXXXGESDLPYIIKCTREGDIETLGRWDFDEELFASMTAHPK 682
            +L ++  D PL  + DP+    GN++PV E        V+G +PD + G YIRNG NP   P    H F+GDGM+H+++++ G A Y+ R+ KT +   E+  G  +FP      +G   + + +   AR L G +N + G G+AN              E DLPY +K T+ GD++T+GR+DFD +L ++M AHPK
Sbjct:   86 ALISHEQDSPLPKTADPRVQIAGNYSPVPESSVRRNLTVEGTIPDCIDGVYIRNGANPMFEPTAGHHLFDGDGMVHAVKITNGSASYACRFTKTERLVQEKRLGRPVFPKAIGELHGHSGIARLMLFYARGLCGLINNQNGVGVANAGLVYFNNRLLAMSEDDLPYQLKITQTGDLQTVGRYDFDGQLKSAMIAHPK 282          
BLAST of EY710928 vs. ExPASy Swiss-Prot
Match: NCED3_ARATH (9-cis-epoxycarotenoid dioxygenase NCED3, chloroplastic OS=Arabidopsis thaliana GN=NCED3 PE=2 SV=1)

HSP 1 Score: 144.821 bits (364), Expect = 6.303e-34
Identity = 74/188 (39.36%), Postives = 104/188 (55.32%), Query Frame = 2
Query:  119 PLHPSVDPKHVFTGNFAPVDELGPTECPVVDGKLPDSLTGTYIRNGPNPQHMPRGPLHFFEGDGMLHSMQLSKGRAIYSSRYVKTYKYKLERDAGGQIFPNVFSGFYGLVDMVQCVASTARVLMGHVNLKKGFGLANTXXXXXXXXXXXXGESDLPYIIKCTREGDIETLGRWDFDEELFASMTAHPK 682
            PL  + DP     GNFAPV+E        V GKLPDS+ G Y+RNG NP H P    HFF+GDGM+H+++   G A Y+ R+ +T ++  ER  G  +FP      +G   + + +   AR   G V+   G G+AN              E DLPY ++ T  GD++T+GR+DFD +L ++M AHPK
Sbjct:  112 PLPKTADPSVQIAGNFAPVNEQPVRRNLPVVGKLPDSIKGVYVRNGANPLHEPVTGHHFFDGDGMVHAVKFEHGSASYACRFTQTNRFVQERQLGRPVFPKAIGELHGHTGIARLMLFYARAAAGIVDPAHGTGVANAGLVYFNGRLLAMSEDDLPYQVQITPNGDLKTVGRFDFDGQLESTMIAHPK 299          
BLAST of EY710928 vs. ExPASy Swiss-Prot
Match: NCED9_ARATH (9-cis-epoxycarotenoid dioxygenase NCED9, chloroplastic OS=Arabidopsis thaliana GN=NCED9 PE=2 SV=1)

HSP 1 Score: 141.739 bits (356), Expect = 5.336e-33
Identity = 78/237 (32.91%), Postives = 117/237 (49.37%), Query Frame = 2
Query:   17 AWAKICAPIQSLMGTNSSYNTKSAPSLFTNII------------DRPLHP---SVDPKHVFTGNFAPVDELGPTECPVVDGKLPDSLTGTYIRNGPNPQHMPRGPLHFFEGDGMLHSMQLSKGRAIYSSRYVKTYKYKLERDAGGQIFPNVFSGFYGLVDMVQCVASTARVLMGHVNLKKGFGLANTXXXXXXXXXXXXGESDLPYIIKCTREGDIETLGRWDFDEELFASMTAHPK 682
            +W K+C  + +L+   ++ N K  P   T  +            +R  HP   + DP     GNF PV E        V G +P+ + G Y+RNG NP H P    H F+GDGM+H+++   G   Y+ R+ +T +   ER+ G  +FP      +G + + + +    R L G V+   G G+AN              E DLPY +K T+ GD+ET GR+DFD +L ++M AHPK
Sbjct:  123 SWKKLCNDVTNLIPKTTNQNPKLNPVQRTAAMVLDAVENAMISHERRRHPHPKTADPAVQIAGNFFPVPEKPVVHNLPVTGTVPECIQGVYVRNGANPLHKPVSGHHLFDGDGMVHAVRFDNGSVSYACRFTETNRLVQERECGRPVFPKAIGELHGHLGIAKLMLFNTRGLFGLVDPTGGLGVANAGLVYFNGHLLAMSEDDLPYHVKVTQTGDLETSGRYDFDGQLKSTMIAHPK 359          
BLAST of EY710928 vs. ExPASy Swiss-Prot
Match: CCD_CROSA (Carotenoid 9,10(9',10')-cleavage dioxygenase OS=Crocus sativus GN=CCD PE=1 SV=1)

HSP 1 Score: 139.813 bits (351), Expect = 2.028e-32
Identity = 84/215 (39.07%), Postives = 114/215 (53.02%), Query Frame = 2
Query:   83 SAPSLFTNIIDRPLHPSVDPKHVFTGNFAPV-DELGPTECPVVDGKLPDSLTGTYIRNGPNPQHMPRGPLHFFEGDGMLHSMQLSKGRAIYSSRYVKTYKYKLERDAGGQIFPNV--FSGFYGLVDMVQCVASTARVLMGHVNLKKGFGLANTXXXXXXXXXXXXGESDLPYIIKCTREGDIETLGRWDFDEELFASMTAHPKKT*PQRDFCFQF 718
            SA  L    +    H    P H  +GNFAPV DE  P     V G LP+ L G ++R GPNP+ MP    H+F+GDGM+H M++  G+A Y+SRYVKT + K E    G  F  +    GF+GL  MVQ     A++ +  +++  G G  NT             E+D PY++K   +GD++TLG  D+D+ L  S TAHPK   P  D  F F
Sbjct:   29 SAVDLIEKAVVYLFHDKSKPCHYLSGNFAPVVDETPPCPDLPVRGHLPECLNGEFVRVGPNPKFMPVAGYHWFDGDGMIHGMRIKDGKATYASRYVKTSRLKQEEYFEGPKFMKIGDLKGFFGLF-MVQMQLLRAKLKV--IDVSYGVGTGNTALIYHHGKLLALSEADKPYVVKVLEDGDLQTLGLLDYDKRLSHSFTAHPKVD-PFTDEMFTF 239          
BLAST of EY710928 vs. ExPASy Swiss-Prot
Match: NCED1_PHAVU (9-cis-epoxycarotenoid dioxygenase NCED1, chloroplastic OS=Phaseolus vulgaris GN=NCED1 PE=2 SV=1)

HSP 1 Score: 137.502 bits (345), Expect = 1.006e-31
Identity = 69/188 (36.70%), Postives = 102/188 (54.26%), Query Frame = 2
Query:  119 PLHPSVDPKHVFTGNFAPVDELGPTECPVVDGKLPDSLTGTYIRNGPNPQHMPRGPLHFFEGDGMLHSMQLSKGRAIYSSRYVKTYKYKLERDAGGQIFPNVFSGFYGLVDMVQCVASTARVLMGHVNLKKGFGLANTXXXXXXXXXXXXGESDLPYIIKCTREGDIETLGRWDFDEELFASMTAHPK 682
            PL  + DPK    GNFAPV E    +   V GK+P  + G Y+RNG NP + P    HFF+GDGM+H+++ + G A Y+ R+ +T +   E+  G  +FP      +G   + + +   AR L   V+   G G+AN              E DLPY ++ T  GD+ T+GR+DF+ +L ++M AHPK
Sbjct:  131 PLPKTADPKVQIAGNFAPVPEHAADQALPVVGKIPKCIDGVYVRNGANPLYEPVAGHHFFDGDGMVHAVKFTNGAASYACRFTETQRLAQEKSLGRPVFPKAIGELHGHSGIARLLLFYARSLFQLVDGSHGMGVANAGLVYFNNHLLAMSEDDLPYHVRITSNGDLTTVGRYDFNGQLNSTMIAHPK 318          
BLAST of EY710928 vs. ExPASy Swiss-Prot
Match: CCD1_PEA (Carotenoid 9,10(9',10')-cleavage dioxygenase 1 OS=Pisum sativum GN=CCD1 PE=2 SV=1)

HSP 1 Score: 136.346 bits (342), Expect = 2.242e-31
Identity = 79/205 (38.54%), Postives = 111/205 (54.15%), Query Frame = 2
Query:   77 TKSAPSLFTNIIDRPLHPSVDPKHVFTGNFAPV-DELGPTECPVVDGKLPDSLTGTYIRNGPNPQHMPRGPLHFFEGDGMLHSMQLSKGRAIYSSRYVKTYKYKLERDAGGQIFPNV--FSGFYGLVDMVQCVASTARVLMGHVNLKKGFGLANTXXXXXXXXXXXXGESDLPYIIKCTREGDIETLGRWDFDEELFASMTAHPK 682
            T  A  L   II +  + S  P H  +GNFAPV DE  P +   V G LPD L G ++R GPNP+  P    H+F+GDGM+H +++  G+A Y SR+VKT ++K E    G  F  +    G +GL+ MV      A++ +  +++  G G ANT             E D PY IK   +GD++TLG  D+D+ L  + TAHPK
Sbjct:   23 TSKAVDLLEKIIVKLFYDSSLPHHWLSGNFAPVKDETPPVKDLTVQGHLPDCLNGEFVRVGPNPKFSPVAGYHWFDGDGMIHGLRIKDGKASYVSRFVKTSRFKQEEYFNGSKFMKIGDLKGLFGLL-MVNMQMLRAKLKI--LDVSYGHGTANTALVYHHQKLLALSEGDKPYAIKVFEDGDLQTLGMLDYDKRLGHNFTAHPK 224          
BLAST of EY710928 vs. ExPASy Swiss-Prot
Match: NCED6_ARATH (9-cis-epoxycarotenoid dioxygenase NCED6, chloroplastic OS=Arabidopsis thaliana GN=NCED6 PE=2 SV=1)

HSP 1 Score: 133.265 bits (334), Expect = 1.898e-30
Identity = 74/196 (37.76%), Postives = 104/196 (53.06%), Query Frame = 2
Query:  113 DRPLHPSVDPKHVFTGNFAPVDELGPTECPV-----VDGKLPDSLTGTYIRNGPNPQHMPRGPLHFFEGDGMLHSMQLSKGRAI-YSSRYVKTYKYKLERDAGGQIFPNVFSGFYGLVDMVQCVASTARVLMGHVNLKKGFGLANTXXXXXXXXXXXXGESDLPYIIKCTREGDIETLGRWDFDEELFASMTAHPK 682
            +RPL    DP    +GNFAPV+E     CPV     V G++P  L G YIRNG NP   P    H F+GDGM+H++ +     + YS RY KT +   E   G  +FP      +G   + +    TAR  +G V+  +G G+AN              E DLPY +K   +GD+ET+GR+ FD+++ +S+ AHPK
Sbjct:   88 NRPLPKPTDPAVQLSGNFAPVNE-----CPVQNGLEVVGQIPSCLKGVYIRNGANPMFPPLAGHHLFDGDGMIHAVSIGFDNQVSYSCRYTKTNRLVQETALGRSVFPKPIGELHGHSGLARLALFTARAGIGLVDGTRGMGVANAGVVFFNGRLLAMSEDDLPYQVKIDGQGDLETIGRFGFDDQIDSSVIAHPK 278          
BLAST of EY710928 vs. ExPASy Swiss-Prot
Match: CCD1_PHAVU (Carotenoid 9,10(9',10')-cleavage dioxygenase 1 OS=Phaseolus vulgaris GN=CCD1 PE=1 SV=1)

HSP 1 Score: 132.88 bits (333), Expect = 2.479e-30
Identity = 73/196 (37.24%), Postives = 103/196 (52.55%), Query Frame = 2
Query:   95 LFTNIIDRPLHPSVDPKHVFTGNFAPVDELGPTECPVVDGKLPDSLTGTYIRNGPNPQHMPRGPLHFFEGDGMLHSMQLSKGRAIYSSRYVKTYKYKLERDAGGQIFPNVFSGFYGLVDMVQCVASTARVLMGHVNLKKGFGLANTXXXXXXXXXXXXGESDLPYIIKCTREGDIETLGRWDFDEELFASMTAHPK 682
            L   ++ + L+ S  P H  TGNF PV E  PT+   V G LPD L G ++R GPNP+  P    H+F+GDGM+H +++  G+A Y SR+V+T + K E   G   F  +     GL  ++       R  +  ++L  G G  NT             E+D PY IK   +GD++TLG  D+D+ L  S TAHPK
Sbjct:   32 LLEKLLVKFLYDSSLPHHYLTGNFGPVTETPPTKDLPVKGHLPDCLNGEFVRVGPNPKFAPVAGYHWFDGDGMIHGLRIKDGKATYVSRFVETSRLKQEEYFGRSKFMKI-GDLKGLFGLLMVNIHMLRTKLKVLDLSYGGGTTNTALVYHHGKLLALSEADKPYAIKVFEDGDLQTLGMLDYDKRLGHSFTAHPK 226          
The following BLAST results are available for this feature:
BLAST of EY710928 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 12
Match NameE-valueIdentityDescription
CCD4_ARATH1.760e-6051.65Probable carotenoid cleavage dioxygenase 4, chloro... [more]
NCED5_ARATH6.091e-3740.21Probable 9-cis-epoxycarotenoid dioxygenase NCED5, ... [more]
NCED2_ARATH3.695e-3436.559-cis-epoxycarotenoid dioxygenase NCED2, chloropla... [more]
NCED3_ARATH6.303e-3439.369-cis-epoxycarotenoid dioxygenase NCED3, chloropla... [more]
NCED9_ARATH5.336e-3332.919-cis-epoxycarotenoid dioxygenase NCED9, chloropla... [more]
CCD_CROSA2.028e-3239.07Carotenoid 9,10(9',10')-cleavage dioxygenase OS=Cr... [more]
NCED1_PHAVU1.006e-3136.709-cis-epoxycarotenoid dioxygenase NCED1, chloropla... [more]
CCD1_PEA2.242e-3138.54Carotenoid 9,10(9',10')-cleavage dioxygenase 1 OS=... [more]
NCED6_ARATH1.898e-3037.769-cis-epoxycarotenoid dioxygenase NCED6, chloropla... [more]
CCD1_PHAVU2.479e-3037.24Carotenoid 9,10(9',10')-cleavage dioxygenase 1 OS=... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C3-702-001-G06-CT.F Sweet orange fruit, development stadium (3 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY710928 ID=EY710928; Name=EY710928; organism=Citrus sinensis; type=EST; length=903bp
CCACGCGTCCGCGGACGCGTGGGCAAAAATATGTGCACCCATACAATCTT
TAATGGGAACAAATTCATCCTACAACACCAAATCCGCGCCATCATTGTTT
ACAAACATTATTGATCGTCCTCTTCATCCTTCTGTTGATCCAAAGCATGT
CTTCACCGGAAACTTTGCTCCGGTGGACGAGCTTGGCCCGACTGAGTGCC
CGGTGGTTGATGGCAAGCTTCCGGACTCTCTAACCGGCACGTACATCCGA
AACGGACCAAACCCACAGCACATGCCCCGTGGCCCTCTCCACTTCTTTGA
AGGTGATGGCATGCTTCACTCAATGCAATTATCTAAAGGGCGTGCAATTT
ACAGTAGCCGCTATGTCAAGACTTACAAGTACAAGCTCGAGAGAGATGCC
GGTGGCCAAATTTTCCCCAACGTCTTCTCAGGATTTTATGGGCTTGTGGA
TATGGTTCAATGTGTTGCATCGACAGCAAGAGTGTTGATGGGTCACGTAA
ATCTCAAGAAAGGATTTGGTTTGGCCAATACAAGTCTTGCTTTCTTTTCG
TCTAAGCTTCTTGCTCTTGGTGAGTCCGATTTGCCCTACATTATAAAATG
TACTCGAGAAGGCGACATTGAGACTTTAGGGAGATGGGATTTTGATGAAG
AATTATTTGCAAGCATGACTGCGCATCCAAAGAAGACATGACCACAAAGA
GACTTTTGCTTTCAATTTAGCCCCTTTTTTCCCCTCATCTTACATCTCCC
GTTTGATGCAATGGGGTAAGCCAAAAGAGGGGCCATATTGCCATAAACCA
CCACCTTCCTCATGATTTGCTAAACAAGAGGGTTCCTTTTTCTCAAAACA
ATTACGTTTTCCAAAAATGTATGTGGGAAAAGATTCCAAGGTTTTTACCC
GAA
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