EY710909

Overview
NameEY710909
Unique NameEY710909
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length929
Libraries
Library NameType
Sweet orange fruit, development stadium (3 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
EY710909_ssr726 microsatellite EY710909_ssr726:726..737. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
BLAST of EY710909 vs. ExPASy Swiss-Prot
Match: RPS5_ARATH (Disease resistance protein RPS5 OS=Arabidopsis thaliana GN=RPS5 PE=1 SV=2)

HSP 1 Score: 72.0182 bits (175), Expect = 5.395e-12
Identity = 63/205 (30.73%), Postives = 98/205 (47.80%), Query Frame = 3
Query:  162 RVKECGK------LKNIFSKTLALK-LGKLEQLSFQKCD----RLEEIVSSDEPEEKPEAAVSNIPPPPIFQNLQKLIISKCHKMKSVFSLTIVKGLKELKELNIVGCNEMERIISVSDEERKEERADILI---QLENLILEDLTELKTIYNGKEILEWAGLERLQVRNCPNVKRLPMDASS---APKLVEVRAETQWLEALEWE 725
            R+ EC K      LK    + L L  +G L +L  ++C     ++E   SS    + P          P F NL ++ I+KCH +K    LT +     L  L +    E+E IIS   EE+ EE +  ++   +LE L L +L  LK IY   + L +  L+ + V  C  +++LP+D+ S     +LV    E +W+E +EWE
Sbjct:  682 RLVECIKEVDFKYLKEESVRVLTLPTMGNLRKLGIKRCGMREIKIERTTSSSSRNKSPTT--------PCFSNLSRVFIAKCHGLK---DLTWLLFAPNLTFLEVGFSKEVEDIIS---EEKAEEHSATIVPFRKLETLHLFELRGLKRIY--AKALHFPCLKVIHVEKCEKLRKLPLDSKSGIAGEELVIYYGEREWIERVEWE 870          
BLAST of EY710909 vs. ExPASy Swiss-Prot
Match: DRL31_ARATH (Putative disease resistance protein At5g05400 OS=Arabidopsis thaliana GN=At5g05400 PE=2 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 1.202e-11
Identity = 55/170 (32.35%), Postives = 92/170 (54.12%), Query Frame = 3
Query:  258 RLEEIVSSDEPEEKPEAAVSN---IPPPPI-----FQNLQKLIISKCHKMKSVFSLTIVKGLKELKELNIVGCNEMERIISVSDEERKEERADI-----LIQLENLILEDLTELKTIYNGKEILEWAGLERLQVRNCPNVKRLPMDASSAPKL-VEVRAETQWLEALEWE 725
            R  EI  S  P+ + E + SN   I  P +     F NL+K+ +  C  +K    LT +     L  L +V   ++E IIS S+E R ++  ++       +LE L L +L +LK+IY  ++ L +  L+ + +++CP + +LP+D+ SA K  V + AE +WL+ L+WE
Sbjct:  699 RFLEIQDSHIPKIEIEGSSSNESEIVGPRVRRDISFINLRKVRLDNCTGLKD---LTWLVFAPHLATLYVVCLPDIEHIISRSEESRLQKTCELAGVIPFRELEFLTLRNLGQLKSIY--RDPLLFGKLKEINIKSCPKLTKLPLDSRSAWKQNVVINAEEEWLQGLQWE 863          
The following BLAST results are available for this feature:
BLAST of EY710909 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
RPS5_ARATH5.395e-1230.73Disease resistance protein RPS5 OS=Arabidopsis tha... [more]
DRL31_ARATH1.202e-1132.35Putative disease resistance protein At5g05400 OS=A... [more]
back to top
Properties
Property NameValue
Genbank descriptionCS00-C3-702-001-E11-CT.F Sweet orange fruit, development stadium (3 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY710909 ID=EY710909; Name=EY710909; organism=Citrus sinensis; type=EST; length=929bp
CCACGCGTCCGGAAGTGTTTTGCTTGGAAGAGAATGAGATAGAGGAAGAA
CAAGCTGGACTCCGAAAATTGAGGGAACTCATATTGGAGGGACTTCCCAA
ACTTCTAACCATTTGGAAAGGGAATCATTCAAAAGCGCATGTTGAGAATC
TAGAAATAATGAGGGTGAAGGAATGTGGGAAATTGAAAAACATCTTTTCA
AAAACTTTGGCTCTGAAGCTTGGTAAATTAGAGCAACTCTCGTTTCAGAA
GTGTGACCGCTTGGAGGAAATTGTTTCAAGTGACGAACCAGAGGAGAAGC
CTGAAGCTGCAGTTTCTAATATCCCACCACCGCCCATATTCCAGAATCTA
CAGAAGCTTATTATCTCAAAATGCCATAAAATGAAGAGCGTCTTTTCACT
GACAATTGTTAAAGGTCTGAAAGAGCTCAAAGAACTGAACATTGTTGGCT
GCAATGAGATGGAGAGAATCATTTCCGTATCAGACGAAGAAAGAAAAGAA
GAGAGAGCCGACATACTCATTCAGCTGGAGAATTTAATCCTGGAGGATCT
AACCGAGCTGAAAACTATCTACAATGGCAAAGAAATTTTGGAGTGGGCTG
GCCTGGAAAGGTTACAGGTGCGGAATTGTCCAAATGTCAAGAGACTTCCT
ATGGATGCAAGTAGTGCACCAAAATTGGTTGAAGTAAGAGCAGAAACACA
GTGGCTTGAAGCTCTCGAGTGGGAAGATGATGATGATTACTGCAAAGGNC
GNCTGCTATCGCTTGCACAAAAGATGCACTTCAAAAAATGAATGGGAGTA
TTTACTTCGAGGATTAAAGCTGAAACTTGAAGTGTTACATCTTTTGAGAA
GTGGAGCTCTCTTTGTACACAGGACGCCAGTGGAAACTGTCATCGATGTG
TCTGGGGTTGTTGNTTCCACAACTTAAAT
back to top