EY710901

Overview
NameEY710901
Unique NameEY710901
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length878
Libraries
Library NameType
Sweet orange fruit, development stadium (3 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY710901 vs. ExPASy Swiss-Prot
Match: VPS35_MOUSE (Vacuolar protein sorting-associated protein 35 OS=Mus musculus GN=Vps35 PE=1 SV=1)

HSP 1 Score: 150.984 bits (380), Expect = 8.413e-36
Identity = 91/210 (43.33%), Postives = 127/210 (60.48%), Query Frame = 1
Query:   13 LVFSSLKLVRQLQGPEENPFGEEGSTTPKKVFQLLNQTIETLYGVPAPELALRLYLQCAEAAND---SDLEPVAYEFFTQAYILYEEEISDSRAQVTAIHLIIGTLQRMHVFGVENRDTLTHKATGYSAKLLKKPDQCRAVYACSHLFWV-----DDQDNMKDGERVLLCLKRALRIANAAQQMSNATRGSTGSVTLFVEILNKYLYFFE 618
            LVF++ +L  + +  E +   ++     +K+F   +QTI  L      EL LRL+LQ A AA +    + E VAYEF +QA+ LYE+EISDS+AQ+ AI LIIGT +RM  F  EN + L  +    ++KLLKKPDQ RAV  C+HLFW       + + +  G+RV+ CLK+AL+IAN     S         V LF+EILN+Y+YF+E
Sbjct:  532 LVFAAYQLAFRYK--ENSQMDDKWEKKCQKIFSFAHQTISALIKAELAELPLRLFLQGALAAGEIGFENHETVAYEFMSQAFSLYEDEISDSKAQLAAITLIIGTFERMKCFSEENHEPLRTQCALAASKLLKKPDQGRAVSTCAHLFWSGRNTDKNGEELHGGKRVMECLKKALKIANQCMDPSL-------QVQLFIEILNRYIYFYE 732          
BLAST of EY710901 vs. ExPASy Swiss-Prot
Match: VPS35_HUMAN (Vacuolar protein sorting-associated protein 35 OS=Homo sapiens GN=VPS35 PE=1 SV=2)

HSP 1 Score: 150.599 bits (379), Expect = 1.099e-35
Identity = 91/210 (43.33%), Postives = 127/210 (60.48%), Query Frame = 1
Query:   13 LVFSSLKLVRQLQGPEENPFGEEGSTTPKKVFQLLNQTIETLYGVPAPELALRLYLQCAEAAND---SDLEPVAYEFFTQAYILYEEEISDSRAQVTAIHLIIGTLQRMHVFGVENRDTLTHKATGYSAKLLKKPDQCRAVYACSHLFWV-----DDQDNMKDGERVLLCLKRALRIANAAQQMSNATRGSTGSVTLFVEILNKYLYFFE 618
            LVF++ +L  + +  E +   ++     +K+F   +QTI  L      EL LRL+LQ A AA +    + E VAYEF +QA+ LYE+EISDS+AQ+ AI LIIGT +RM  F  EN + L  +    ++KLLKKPDQ RAV  C+HLFW       + + +  G+RV+ CLK+AL+IAN     S         V LF+EILN+Y+YF+E
Sbjct:  532 LVFAAYQLAFRYK--ENSKVDDKWEKKCQKIFSFAHQTISALIKAELAELPLRLFLQGALAAGEIGFENHETVAYEFMSQAFSLYEDEISDSKAQLAAITLIIGTFERMKCFSEENHEPLRTQCALAASKLLKKPDQGRAVSTCAHLFWSGRNTDKNGEELHGGKRVMECLKKALKIANQCMDPSL-------QVQLFIEILNRYIYFYE 732          
BLAST of EY710901 vs. ExPASy Swiss-Prot
Match: VPS35_BOVIN (Vacuolar protein sorting-associated protein 35 OS=Bos taurus GN=VPS35 PE=2 SV=1)

HSP 1 Score: 150.599 bits (379), Expect = 1.099e-35
Identity = 91/210 (43.33%), Postives = 127/210 (60.48%), Query Frame = 1
Query:   13 LVFSSLKLVRQLQGPEENPFGEEGSTTPKKVFQLLNQTIETLYGVPAPELALRLYLQCAEAAND---SDLEPVAYEFFTQAYILYEEEISDSRAQVTAIHLIIGTLQRMHVFGVENRDTLTHKATGYSAKLLKKPDQCRAVYACSHLFWV-----DDQDNMKDGERVLLCLKRALRIANAAQQMSNATRGSTGSVTLFVEILNKYLYFFE 618
            LVF++ +L  + +  E +   ++     +K+F   +QTI  L      EL LRL+LQ A AA +    + E VAYEF +QA+ LYE+EISDS+AQ+ AI LIIGT +RM  F  EN + L  +    ++KLLKKPDQ RAV  C+HLFW       + + +  G+RV+ CLK+AL+IAN     S         V LF+EILN+Y+YF+E
Sbjct:  532 LVFAAYQLAFRYK--ENSKVDDKWEKKCQKIFSFAHQTISALIKAELAELPLRLFLQGALAAGEIGFENHETVAYEFMSQAFSLYEDEISDSKAQLAAITLIIGTFERMKCFSEENHEPLRTQCALAASKLLKKPDQGRAVSTCAHLFWSGRNTDKNGEELHGGKRVMECLKKALKIANQCMDPSL-------QVQLFIEILNRYIYFYE 732          
BLAST of EY710901 vs. ExPASy Swiss-Prot
Match: VPS35_SCHPO (Vacuolar protein sorting-associated protein 35 OS=Schizosaccharomyces pombe GN=vps35 PE=1 SV=1)

HSP 1 Score: 130.954 bits (328), Expect = 9.009e-30
Identity = 72/177 (40.68%), Postives = 105/177 (59.32%), Query Frame = 1
Query:  103 VFQLLNQTIETLY-GVPAPELALRLYLQCAEAANDSDLEPVAYEFFTQAYILYEEEISDSRAQVTAIHLIIGTLQRMHVFGVENRDTLTHKATGYSAKLLKKPDQCRAVYACSHLFWV----DDQDNMKDGERVLLCLKRALRIANAAQQMSNATRGSTGSVTLFVEILNKYLYFFE 618
            +++ +N  I  LY    + EL L LYL  AE A+  +    AYEFFTQA+ +YEE + DS  Q   + +IIG LQ+   F V++ DTL  K T Y++KLLKKPDQC  +Y  SHL+W     +D    +D +RVL CL+++L+IA+A             S+ LF+ IL +Y Y+++
Sbjct:  534 LWEFVNTCINVLYKNGDSLELCLALYLSAAEMADQENYPDFAYEFFTQAFSIYEESVLDSELQYQQLLMIIGKLQKTRNFSVDDYDTLITKCTLYASKLLKKPDQCCGIYLASHLWWQVASGEDSRPFQDPKRVLECLQKSLKIADACMDQLT-------SLKLFINILERYFYYYD 703          
BLAST of EY710901 vs. ExPASy Swiss-Prot
Match: VPS35_YEAST (Vacuolar protein sorting-associated protein 35 OS=Saccharomyces cerevisiae GN=VPS35 PE=1 SV=2)

HSP 1 Score: 121.324 bits (303), Expect = 7.138e-27
Identity = 72/205 (35.12%), Postives = 116/205 (56.59%), Query Frame = 1
Query:   55 PEENPFGEEGSTTPKKVFQLLNQTIETLYGV---PAPELALRLYLQCAEAANDSDLEPVAYEFFTQAYILYEEEISDSRAQVTAIHLIIGTLQRMH-VFGVENRDTLTHKATGYSAKLLKKPDQCRAVYACSHLFWVDDQDNM-----------KDGERVLLCLKRALRIANAAQQMSNATRGSTGSVTLFVEILNKYLYFFEXG 624
            P+        S   K++F+ +++ I  ++        +L L+L LQCA  A+   L  ++Y+FF+QA+ ++EE +SDS+ Q+ A+  I  +LQ+   ++     D+L  + T + +KLLKK DQCRAVY CSHL+W  +  N+           +DG+RVL CL+R+LR+A++          +  S  L VEILN+ LY+F  G
Sbjct:  610 PDNKTLLSHYSNLLKQMFKFVSRCINDIFNSCNNSCTDLILKLNLQCAILADQLQLNEISYDFFSQAFTIFEESLSDSKTQLQALIYIAQSLQKTRSLYKEAYYDSLIVRCTLHGSKLLKKQDQCRAVYLCSHLWWATEISNIGEEEGITDNFYRDGKRVLECLQRSLRVADSIMD-------NEQSCELMVEILNRCLYYFIHG 807          
BLAST of EY710901 vs. ExPASy Swiss-Prot
Match: VPS35_DICDI (Vacuolar sorting protein 35 OS=Dictyostelium discoideum GN=vps35 PE=3 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 3.794e-20
Identity = 67/219 (30.59%), Postives = 116/219 (52.97%), Query Frame = 1
Query:    7 VRLVFSSLKLVRQLQGP--------EENPFGEEGSTTPKKVFQLLNQTIETLYGVPAPELALRLYLQCAEAANDSDLEPVAYEFFTQAYILYEEEISDSRAQVTAIHLIIGTLQRMHVFGVENRDTLTHKATGYSAKLLKKPDQCRAVYACSHLFWVDDQDNM-KDGERVLLCLKRALRIANAAQQMSNATRGSTGSVTLFVEILNKYLYFFEXGTHRI 636
            V LVF SL+ +R  +          +EN +   GS    K+F  +++TI+ L  +   +L+ RLYLQ  +  +   L     E   +A ++++E+I+D +AQV A+ L+I TL  + +   E  ++L  +    +++LL   DQ + +  CSHLFWVD+     ++ + VL  LK+AL I      +SN +    G+   FV+ILN+ L++ +  T  +
Sbjct:  532 VPLVFCSLRFIRNFKQQVDSGVISLDENKWIAIGS----KIFTFVSETIKALADIKLADLSFRLYLQALQTFDHCGLVSRVKELAIKALLIFQEDIADFKAQVMALQLLISTLNSLSIPNEEIYESLAAQTIKQASRLLLPQDQAKLISTCSHLFWVDNPSRQYQNPDSVLQALKKALSI------ISNESSPGLGT---FVDILNECLFYCDKETDAV 737          
The following BLAST results are available for this feature:
BLAST of EY710901 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 6
Match NameE-valueIdentityDescription
VPS35_MOUSE8.413e-3643.33Vacuolar protein sorting-associated protein 35 OS=... [more]
VPS35_HUMAN1.099e-3543.33Vacuolar protein sorting-associated protein 35 OS=... [more]
VPS35_BOVIN1.099e-3543.33Vacuolar protein sorting-associated protein 35 OS=... [more]
VPS35_SCHPO9.009e-3040.68Vacuolar protein sorting-associated protein 35 OS=... [more]
VPS35_YEAST7.138e-2735.12Vacuolar protein sorting-associated protein 35 OS=... [more]
VPS35_DICDI3.794e-2030.59Vacuolar sorting protein 35 OS=Dictyostelium disco... [more]
back to top
Properties
Property NameValue
Genbank descriptionCS00-C3-702-001-E03-CT.F Sweet orange fruit, development stadium (3 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY710901 ID=EY710901; Name=EY710901; organism=Citrus sinensis; type=EST; length=878bp
CCACGCGTCCGCCTTGTGTTTTCTTCTCTGAAGTTGGTTCGGCAGCTCCA
AGGTCCAGAAGAAAATCCTTTTGGAGAAGAGGGATCAACTACACCTAAGA
AAGTTTTCCAGCTTTTAAACCAGACTATTGAGACCCTATATGGTGTTCCA
GCACCTGAATTGGCATTGCGGTTGTACTTGCAGTGTGCCGAGGCTGCAAA
TGACTCTGATCTAGAACCTGTGGCTTATGAATTTTTCACTCAAGCATATA
TCCTGTATGAAGAAGAAATTTCAGATTCCAGAGCACAAGTGACAGCAATA
CATCTAATAATAGGGACTCTCCAGAGGATGCACGTATTTGGTGTAGAAAA
CAGGGATACATTAACACACAAGGCTACAGGGTATTCTGCAAAGCTCTTAA
AGAAGCCTGATCAGTGCAGAGCTGTCTATGCATGCTCACATCTCTTCTGG
GTTGATGATCAGGATAACATGAAAGATGGAGAGAGGGTCCTGCTCTGTCT
CAAGCGTGCACTAAGAATAGCAAATGCTGCTCAACAAATGTCTAATGCCA
CACGAGGTAGCACTGGATCAGTCACACTTTTTGTAGAGATACTGAACAAG
TACCTTTATTTCTTTGAGAANGGAACACACAGAATCATGCTGCTGCAATC
CAGAGCCTGATGGAGCTGATTACCGGAGANATGCAAAGCGAATCTAATTC
ACGGGATCAGCTGCAGATGCTTTCTTTGCAAGCACATTGCGATACATACA
GTTCCAGAAAACAAAAAGTGGGGGCAGTGGGGTGAAAAAAATGAGCCCTA
TCAGGGTGTGACTCCGTGGATGACAAGAAGCCATTTAGTTTTTGCAATAT
TCTGGAAACTGGACAGGTTGAATCAGGC
back to top