EY710771

Overview
NameEY710771
Unique NameEY710771
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length856
Libraries
Library NameType
Sweet orange fruit, development stadium (2 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
EY710771_ssr299 microsatellite EY710771_ssr299:299..313. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
BLAST of EY710771 vs. ExPASy Swiss-Prot
Match: FAD3C_SOYBN (Omega-3 fatty acid desaturase, chloroplastic OS=Glycine max GN=FAD7 PE=2 SV=1)

HSP 1 Score: 177.948 bits (450), Expect = 6.171e-44
Identity = 107/241 (44.40%), Postives = 124/241 (51.45%), Query Frame = 2
Query:   29 RDRNWGLKVSAPLRVAPLEGEDXXXXXXXXXXXXXXXXXXXXXXXXFDPGAPPPFKLADIRAAIPKHCWVKDPWKSMSYXXXXXXXXXXXXXXXXXXXXXXXXPLYWAAQGTMFWALFVLGHDCGHGSFSNDPKLK*CGGASAAFFNSGFLI--MDGKITTGLIIKTMGMLRMDDPGTRLAEKIYRTLDRGDRFFEIQNPFSPAWNSPFYFWGRSRGKMGFHFGPPRGAWLVRGKEKEGIT 745
            R+RNWGLKVSAPLRVA +E E                         FDPGAPPPF LADIRAAIPKHCWVKDPW+SMSY                        PLYWAAQGTMFWALFVLGHDCGHGSFSN+ KL           +S  L+     +I+     +  G    D+    L EK++R+LD   R      PF P    P Y + RS GK G HF P    + V  + K+ IT
Sbjct:   55 RERNWGLKVSAPLRVASIEEEQKSVDLTNGTNGVEHEKLPE-----FDPGAPPPFNLADIRAAIPKHCWVKDPWRSMSYVVRDVIAVFGLAAAAAYLNNWLVWPLYWAAQGTMFWALFVLGHDCGHGSFSNNSKL---NSVVGHLLHSSILVPYHGWRISHRTHHQHHGHAENDESWHPLPEKLFRSLDTVTRMLRFTAPF-PLLAFPVYLFSRSPGKTGSHFDPSSDLF-VPNERKDVIT 285          
BLAST of EY710771 vs. ExPASy Swiss-Prot
Match: FAD3C_SESIN (Omega-3 fatty acid desaturase, chloroplastic OS=Sesamum indicum GN=FAD7 PE=2 SV=1)

HSP 1 Score: 176.792 bits (447), Expect = 1.375e-43
Identity = 100/245 (40.82%), Postives = 122/245 (49.80%), Query Frame = 2
Query:   29 RDRNWGLKVSAPLRVAPLEGEDXXXXXXXXXXXXXXXXXXXXXXXXFDPGAPPPFKLADIRAAIPKHCWVKDPWKSMSYXXXXXXXXXXXXXXXXXXXXXXXXPLYWAAQGTMFWALFVLGHDCGHGSFSNDPKLK*CGGASAAFFNSGFLI--MDGKITTGLIIKTMGMLRMDDPGTRLAEKIYRTLDRGDRFFEIQNPFSPAWNSPFYFWGRSRGKMGFHFGPPRGAWLVRGKEKEGITQILW 757
            R++NW L+VSAPLRV  +E E+                        FDPGAPPPFKL+DIR AIPKHCWVKDPW+SM Y                        PLYW AQ TMFWALFVLGHDCGHGSFSNDPKL           +S  L+     +I+     +  G +  D+    L+EKIY+ LD   +      PF P    P Y W RS GK G HF P    ++   K+    + + W
Sbjct:   56 REKNWALRVSAPLRVLQVEEEEENKEGERVINGGEE----------FDPGAPPPFKLSDIREAIPKHCWVKDPWRSMGYVVRDVAVVFGLAAVAAYFNNWVVWPLYWFAQSTMFWALFVLGHDCGHGSFSNDPKL---NSVVGHILHSSILVPYHGWRISHRTHHQNHGHVENDESWHPLSEKIYKNLDTATKKLRFTLPF-PLLAYPIYLWSRSPGKQGSHFHPDSDLFVPNEKKDVITSTVCW 286          
BLAST of EY710771 vs. ExPASy Swiss-Prot
Match: FAD3D_ARATH (Temperature-sensitive omega-3 fatty acid desaturase, chloroplastic OS=Arabidopsis thaliana GN=FAD8 PE=2 SV=1)

HSP 1 Score: 172.17 bits (435), Expect = 3.386e-42
Identity = 98/249 (39.36%), Postives = 121/249 (48.59%), Query Frame = 2
Query:   17 GDFSRDRNWGLKVSAPLRVAPLEGEDXXXXXXXXXXXXXXXXXXXXXXXXFDPGAPPPFKLADIRAAIPKHCWVKDPWKSMSYXXXXXXXXXXXXXXXXXXXXXXXXPLYWAAQGTMFWALFVLGHDCGHGSFSNDPKLK*CGGASAAFFNSGFLI--MDGKITTGLIIKTMGMLRMDDPGTRLAEKIYRTLDRGDRFFEIQNPFSPAWNSPFYFWGRSRGKMGFHFGPPRGAWLVRGKEKEGITQILW 757
            G +S+ RNW L V+ PL       E+                        FDPGAPPPF LADIRAAIPKHCWVK+PW SMSY                        PLYW AQGTMFWALFVLGHDCGHGSFSNDP+L      +    +S  L+     +I+     +  G +  D+    L E IY+ L++  + F    PF P    PFY W RS GK G H+ P    +L + K+    +   W
Sbjct:   51 GFYSKTRNWALNVATPLTTLQSPSEEDTER--------------------FDPGAPPPFNLADIRAAIPKHCWVKNPWMSMSYVVRDVAIVFGLAAVAAYFNNWLLWPLYWFAQGTMFWALFVLGHDCGHGSFSNDPRL---NSVAGHLLHSSILVPYHGWRISHRTHHQNHGHVENDESWHPLPESIYKNLEKTTQMFRFTLPF-PMLAYPFYLWNRSPGKQGSHYHPDSDLFLPKEKKDVLTSTACW 275          
BLAST of EY710771 vs. ExPASy Swiss-Prot
Match: FAD3C_ARATH (Omega-3 fatty acid desaturase, chloroplastic OS=Arabidopsis thaliana GN=FAD7 PE=1 SV=1)

HSP 1 Score: 172.17 bits (435), Expect = 3.386e-42
Identity = 104/254 (40.94%), Postives = 125/254 (49.21%), Query Frame = 2
Query:   26 SRD---RNWGLKVSAPLRV-----APLEGEDXXXXXXXXXXXXXXXXXXXXXXXXFDPGAPPPFKLADIRAAIPKHCWVKDPWKSMSYXXXXXXXXXXXXXXXXXXXXXXXXPLYWAAQGTMFWALFVLGHDCGHGSFSNDPKLK*CGGASAAFFNSGFLI--MDGKITTGLIIKTMGMLRMDDPGTRLAEKIYRTLDRGDRFFEIQNPFSPAWNSPFYFWGRSRGKMGFHFGPPRGAWLVRGKEKEGITQILW 757
            SRD   RNW L VS PL       +PLE ++                        FDPGAPPPF LADIRAAIPKHCWVK+PWKS+SY                        PLYW AQGTMFWALFVLGHDCGHGSFSNDPKL           +S  L+     +I+     +  G +  D+    ++EKIY TLD+  RFF    P       PFY W RS GK G H+ P    +L + ++    +   W
Sbjct:   54 SRDGFTRNWALNVSTPLTTPIFEESPLEEDNKQR---------------------FDPGAPPPFNLADIRAAIPKHCWVKNPWKSLSYVVRDVAIVFALAAGAAYLNNWIVWPLYWLAQGTMFWALFVLGHDCGHGSFSNDPKL---NSVVGHLLHSSILVPYHGWRISHRTHHQNHGHVENDESWHPMSEKIYNTLDKPTRFFRFTLPL-VMLAYPFYLWARSPGKKGSHYHPDSDLFLPKERKDVLTSTACW 282          
BLAST of EY710771 vs. ExPASy Swiss-Prot
Match: FAD3C_BRANA (Omega-3 fatty acid desaturase, chloroplastic (Fragment) OS=Brassica napus GN=FAD7 PE=2 SV=1)

HSP 1 Score: 169.859 bits (429), Expect = 1.680e-41
Identity = 100/248 (40.32%), Postives = 121/248 (48.79%), Query Frame = 2
Query:   35 RNWGLKVSAPLRV-----APLEGEDXXXXXXXXXXXXXXXXXXXXXXXXFDPGAPPPFKLADIRAAIPKHCWVKDPWKSMSYXXXXXXXXXXXXXXXXXXXXXXXXPLYWAAQGTMFWALFVLGHDCGHGSFSNDPKLK*CGGASAAFFNSGFLI--MDGKITTGLIIKTMGMLRMDDPGTRLAEKIYRTLDRGDRFFEIQNPFSPAWNSPFYFWGRSRGKMGFHFGPPRGAWLVRGKEKEGITQILW 757
            RNW L V+ PL V      P+E E                         FDPGAPPPF LADIRAAIPKHCWVK+PWKSMSY                        PLYW AQGTMFWALFVLGHDCGHGSFSNDP+L           +S  L+     +I+     +  G +  D+    ++EKIY++LD+  RFF    P       PFY W RS GK G H+ P    +L + +     +   W
Sbjct:   17 RNWALNVTTPLTVDSSSSPPIEEEPKTQR--------------------FDPGAPPPFNLADIRAAIPKHCWVKNPWKSMSYVVRELAIVFALAAGAAYLNNWLVWPLYWIAQGTMFWALFVLGHDCGHGSFSNDPRL---NSVVGHLLHSSILVPYHGWRISHRTHHQNHGHVENDESWHPMSEKIYKSLDKPTRFFRFTLPL-VMLAYPFYLWARSPGKKGSHYHPDSDLFLPKERNDVLTSTACW 240          
BLAST of EY710771 vs. ExPASy Swiss-Prot
Match: FAD3C_RICCO (Omega-3 fatty acid desaturase, chloroplastic OS=Ricinus communis GN=FAD7A-1 PE=2 SV=1)

HSP 1 Score: 169.474 bits (428), Expect = 2.195e-41
Identity = 95/237 (40.08%), Postives = 120/237 (50.63%), Query Frame = 2
Query:   26 SRDRNWGLKVSAPLRVAPLEGEDXXXXXXXXXXXXXXXXXXXXXXXXFDPGAPPPFKLADIRAAIPKHCWVKDPWKSMSYXXXXXXXXXXXXXXXXXXXXXXXXPLYWAAQGTMFWALFVLGHDCGHGSFSNDPKLK*CGGASAAFFNSGFLI--MDGKITTGLIIKTMGMLRMDDPGTRLAEKIYRTLDRGDRFFEIQNPFSPAWNSPFYFWGRSRGKMGFHFGPPRGAWLVRGKE 730
            S+  NW L V+ P+ V+ + GED                        FD GAPPPF LADIRAAIPKHCWVK+PW+SMSY                        PLYW  QGTMFWALFVLGHDCGHGSFSN+PKL           +S  L+     +I+     +  G +  D+    L+EKI+++LD   +      PF P    PFY W RS GK G HF P  G ++ + ++
Sbjct:   59 SKQSNWALNVAVPVNVSTVSGEDDREREEFNGIVNVDEGKGEF----FDAGAPPPFTLADIRAAIPKHCWVKNPWRSMSYVLRDVVVVFGLAAVAAYFNNWVAWPLYWFCQGTMFWALFVLGHDCGHGSFSNNPKL---NSVVGHLLHSSILVPYHGWRISHRTHHQNHGHVENDESWHPLSEKIFKSLDNVTKTLRFSLPF-PMLAYPFYLWSRSPGKKGSHFHPDSGLFVPKERK 287          
BLAST of EY710771 vs. ExPASy Swiss-Prot
Match: FAD3E_PHAAU (Omega-3 fatty acid desaturase, endoplasmic reticulum OS=Phaseolus aureus GN=ARG1 PE=2 SV=1)

HSP 1 Score: 151.369 bits (381), Expect = 6.185e-36
Identity = 88/202 (43.56%), Postives = 106/202 (52.48%), Query Frame = 2
Query:  167 FDPGAPPPFKLADIRAAIPKHCWVKDPWKSMSYXXXXXXXXXXXXXXXXXXXXXXXXPLYWAAQGTMFWALFVLGHDCGHGSFSNDPKLK*CGGASAAFFNSGFLI--MDGKITTGLIIKTMGMLRMDDPGTRLAEKIYRTLDRGDRFFEIQNPFSPAWNSPFYFWGRSRGKMGFHFGPPRGAWLVRGKEKEGI--TQILWG 760
            FDPGAPPPFK+ADIRAAIPKHCW K   +S+SY                        PLYW AQGTMFWALFVLGHDCGHGSFSN  KL    G      +S  L+     +I+     +  G +  D+    L EK+Y+ LD   R      PF P +  PFY W RS GK G HF P     L    E++G+  + + WG
Sbjct:   22 FDPGAPPPFKIADIRAAIPKHCWEKSTLRSLSYVLRDVLVVTALAASAISFNSWFFWPLYWPAQGTMFWALFVLGHDCGHGSFSNSSKLNSFVG---HILHSLILVPYNGWRISHRTHHQNHGHVEKDESWVPLTEKVYKNLDDMTRMLRYSFPF-PIFAYPFYLWNRSPGKEGSHFNPYSN--LFSPGERKGVVTSTLCWG 217          
BLAST of EY710771 vs. ExPASy Swiss-Prot
Match: FAD3E_SOYBN (Omega-3 fatty acid desaturase, endoplasmic reticulum OS=Glycine max GN=FAD3 PE=2 SV=1)

HSP 1 Score: 140.198 bits (352), Expect = 1.426e-32
Identity = 79/199 (39.70%), Postives = 102/199 (51.26%), Query Frame = 2
Query:  167 FDPGAPPPFKLADIRAAIPKHCWVKDPWKSMSYXXXXXXXXXXXXXXXXXXXXXXXXPLYWAAQGTMFWALFVLGHDCGHGSFSNDPKLK*CGGASAAFFNSGFLI--MDGKITTGLIIKTMGMLRMDDPGTRLAEKIYRTLDRGDRFFEIQNPFSPAWNSPFYFWGRSRGKMGFHFGPPRGAWLVRGKEKEGITQILW 757
            FDP APPPFK+A+IRA+IPKHCWVK+PW+S+SY                         +Y   QGTMFWALFVLGHDCGHGSFS+ P L    G      +S  L+     +I+     +  G +  D+    L EKIY+ LD   R      PF P +  P Y + RS GK G HF P    +    ++   I+ + W
Sbjct:   25 FDPSAPPPFKIAEIRASIPKHCWVKNPWRSLSYVLRDVLVIAALVAAAIHFDNWLLWLIYCPIQGTMFWALFVLGHDCGHGSFSDSPLLNSLVG---HILHSSILVPYHGWRISHRTHHQNHGHIEKDESWVPLTEKIYKNLDSMTRLIRFTVPF-PLFVYPIYLFSRSPGKEGSHFNPYSNLFPPSERKGIAISTLCW 219          
BLAST of EY710771 vs. ExPASy Swiss-Prot
Match: FAD3E_BRANA (Omega-3 fatty acid desaturase, endoplasmic reticulum OS=Brassica napus GN=FAD3 PE=2 SV=1)

HSP 1 Score: 137.117 bits (344), Expect = 1.207e-31
Identity = 76/179 (42.46%), Postives = 90/179 (50.28%), Query Frame = 2
Query:  167 FDPGAPPPFKLADIRAAIPKHCWVKDPWKSMSYXXXXXXXXXXXXXXXXXXXXXXXXPLYWAAQGTMFWALFVLGHDCGHGSFSNDPKLK*CGGASAAFFNSGFLI--MDGKITTGLIIKTMGMLRMDDPGTRLAEKIYRTLDRGDRFFEIQNPFSPAWNSPFYFWGRSRGKMGFHFGP 697
            FDP A PPFK+ DIRAAIPKHCWVK P +SMSY                        PLYW AQGT+FWA+FVLGHDCGHGSFS+ P L           +S  L+     +I+     +  G +  D+    L EK+Y+ L    R      P  P    P Y W RS GK G HF P
Sbjct:   23 FDPSAQPPFKIGDIRAAIPKHCWVKSPLRSMSYVTRDIFAVAALAMAAVYFDSWFLWPLYWVAQGTLFWAIFVLGHDCGHGSFSDIPLL---NSVVGHILHSFILVPYHGWRISHRTHHQNHGHVENDESWVPLPEKLYKNLPHSTRMLRYTVPL-PMLAYPIYLWYRSPGKEGSHFNP 197          
BLAST of EY710771 vs. ExPASy Swiss-Prot
Match: FAD3E_TOBAC (Omega-3 fatty acid desaturase, endoplasmic reticulum OS=Nicotiana tabacum GN=FAD3 PE=2 SV=1)

HSP 1 Score: 134.035 bits (336), Expect = 1.022e-30
Identity = 73/179 (40.78%), Postives = 91/179 (50.84%), Query Frame = 2
Query:  167 FDPGAPPPFKLADIRAAIPKHCWVKDPWKSMSYXXXXXXXXXXXXXXXXXXXXXXXXPLYWAAQGTMFWALFVLGHDCGHGSFSNDPKLK*CGGASAAFFNSGFLI--MDGKITTGLIIKTMGMLRMDDPGTRLAEKIYRTLDRGDRFFEIQNPFSPAWNSPFYFWGRSRGKMGFHFGP 697
            FDP APPPF+LA+IR  IPKHCWVKDP +S+SY                        PLYWA QGTMFWA+FVLGHDCGHGSFS+   L           +S  L+     +I+     +  G +  D+    + EK+Y  +    +F   + PF P    P Y   RS GK G HF P
Sbjct:   22 FDPSAPPPFRLAEIRNVIPKHCWVKDPLRSLSYVVRDVIFVATLIGIAIHLDSWLFYPLYWAIQGTMFWAIFVLGHDCGHGSFSDSQLL---NNVVGHILHSAILVPYHGWRISHKTHHQNHGNVETDESWVPMPEKLYNKVGYSTKFLRYKIPF-PLLAYPMYLMKRSPGKSGSHFNP 196          
The following BLAST results are available for this feature:
BLAST of EY710771 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 11
Match NameE-valueIdentityDescription
FAD3C_SOYBN6.171e-4444.40Omega-3 fatty acid desaturase, chloroplastic OS=Gl... [more]
FAD3C_SESIN1.375e-4340.82Omega-3 fatty acid desaturase, chloroplastic OS=Se... [more]
FAD3D_ARATH3.386e-4239.36Temperature-sensitive omega-3 fatty acid desaturas... [more]
FAD3C_ARATH3.386e-4240.94Omega-3 fatty acid desaturase, chloroplastic OS=Ar... [more]
FAD3C_BRANA1.680e-4140.32Omega-3 fatty acid desaturase, chloroplastic (Frag... [more]
FAD3C_RICCO2.195e-4140.08Omega-3 fatty acid desaturase, chloroplastic OS=Ri... [more]
FAD3E_PHAAU6.185e-3643.56Omega-3 fatty acid desaturase, endoplasmic reticul... [more]
FAD3E_SOYBN1.426e-3239.70Omega-3 fatty acid desaturase, endoplasmic reticul... [more]
FAD3E_BRANA1.207e-3142.46Omega-3 fatty acid desaturase, endoplasmic reticul... [more]
FAD3E_TOBAC1.022e-3040.78Omega-3 fatty acid desaturase, endoplasmic reticul... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C3-701-093-A04-CT.F Sweet orange fruit, development stadium (2 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY710771 ID=EY710771; Name=EY710771; organism=Citrus sinensis; type=EST; length=856bp
TTTAAAATAGTTACGGGGTGATTTTTCTAGAGACAGGAACTGGGGTCTTA
AAGTTAGTGCTCCACTGAGGGTGGCACCACTTGAGGGGGAGGATGAAGAA
GAGAGAATCAACGGTGTTAATGGGATTGGAAATAACAAAGGAGTCGAAGA
AGAAGAGGGATCTGAATTTGATCCTGGGGCTCCTCCTCCTTTCAAGCTAG
CTGATATTAGAGCTGCTATTCCAAAGCATTGTTGGGTTAAGGATCCTTGG
AAGTCTATGAGCTATGTTGTTAGAGATGTTGTGGTGGTTTTTGGCTTGGC
TGCTGCTGCTGCTTATTTGAACAATTGGGTTGTTTGGCCTTTGTACTGGG
CTGCTCAGGGAACCATGTTTTGGGCTCTTTTTGTGCTCGGTCATGATTGT
GGTCATGGAAGCTTTTCAAATGATCCCAAGTTGAAATAGTGTGGTGGGGC
ATCTGCTGCATTCTTCAATTCTGGGTTCCTTATCATGGATGGAAAAATAA
CCACAGGACTCATCATCAAAACCATGGGCATGTTGAGAATGGATGATCCG
GGCACCCGTTTGGCTGAAAAAATTTACAGGACTTTGGACAGGGGCGACAG
ATTTTTTGAAATTCAAAATCCCTTTTCCCCTGCTTGGAATTCCCCTTTTT
ATTTTTGGGGAAGGAGTCGGGGAAAAATGGGGTTCCATTTTGGACCCCCA
AGAGGGGCGTGGTTGGTCCGAGGGAAAGAAAAGGAAGGGATCACTCAGAT
ATTATGGGGGAAGAGTATGCCCAAGTCTGCATAGGGGATATAAAAAACTT
AACAAGGGACTCAGACATTGACATAAGACCAGGAACGAGGACACCAACTG
CGAAGA
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