EY710768

Overview
NameEY710768
Unique NameEY710768
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length969
Libraries
Library NameType
Sweet orange fruit, development stadium (2 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY710768 vs. ExPASy Swiss-Prot
Match: PR19B_ARATH (Pre-mRNA-processing factor 19 homolog 2 OS=Arabidopsis thaliana GN=PRP19B PE=1 SV=3)

HSP 1 Score: 157.532 bits (397), Expect = 9.453e-44
Identity = 79/106 (74.53%), Postives = 91/106 (85.85%), Query Frame = 3
Query:   87 QVSDAGTDGRPEGYTSAAFHPDGLILGTGTSEALVKIWDVKSQANVAKFDGHVGAVTAISFSENGYYLATAAHDGVKLWDLRKLKNFRSFESSDSETPTNSVDFDP 404
            QVSD   D +   YT+AAFHPDGLILGTGTS+++VKIWDVKSQANVAKFDGH G VTAISFSENGY+LATAA DGV+LWDLRKL+NF+SF S+D+    NSV+FDP
Sbjct:  346 QVSD---DSKNVDYTAAAFHPDGLILGTGTSQSVVKIWDVKSQANVAKFDGHTGEVTAISFSENGYFLATAAEDGVRLWDLRKLRNFKSFLSADA----NSVEFDP 444          

HSP 2 Score: 41.5874 bits (96), Expect = 9.453e-44
Identity = 25/51 (49.02%), Postives = 30/51 (58.82%), Query Frame = 1
Query:  406 SGSYLAVGSADIRVYPVASVKS*IGNLYQNFFLILP---GTSKANCVKFWS 549
            SGSYL + ++DI+VY  ASVK+       N    LP   GT KA CVKF S
Sbjct:  445 SGSYLGIAASDIKVYQTASVKA-----EWNLIKTLPDLSGTGKATCVKFGS 490          
BLAST of EY710768 vs. ExPASy Swiss-Prot
Match: PR19A_ARATH (Pre-mRNA-processing factor 19 homolog 1 OS=Arabidopsis thaliana GN=PRP19A PE=1 SV=1)

HSP 1 Score: 145.976 bits (367), Expect = 2.872e-39
Identity = 73/105 (69.52%), Postives = 88/105 (83.81%), Query Frame = 3
Query:   87 QVSDAGTDGRPEGYTSAAFHPDGLILGTGTSEALVKIWDVKSQANVAKFDGHVGAVTAISFSENGYYLATAAHDGVKLWDLRKLKNFRSFESSDSETPTNSVDFD 401
            QV+DA  +     YT+AAFHPDGLILGTGT++++VKIWDVKSQANVAKF GH G +T+ISFSENGY+LATAA DGV+LWDLRKLKNFR+F+  D+    NSV+FD
Sbjct:  346 QVTDASEND--VNYTAAAFHPDGLILGTGTAQSIVKIWDVKSQANVAKFGGHNGEITSISFSENGYFLATAALDGVRLWDLRKLKNFRTFDFPDA----NSVEFD 444          

HSP 2 Score: 38.1206 bits (87), Expect = 2.872e-39
Identity = 24/50 (48.00%), Postives = 29/50 (58.00%), Query Frame = 1
Query:  403 HSGSYLAVGSADIRVYPVASVKS*IGNLYQNFFLILP---GTSKANCVKF 543
            HSGSYL + ++DIRV+  ASVK+       N    LP   GT KA  VKF
Sbjct:  445 HSGSYLGIAASDIRVFQAASVKA-----EWNPIKTLPDLSGTGKATSVKF 489          
BLAST of EY710768 vs. ExPASy Swiss-Prot
Match: PRP19_CAEEL (Pre-mRNA-processing factor 19 homolog OS=Caenorhabditis elegans GN=T10F2.4 PE=2 SV=2)

HSP 1 Score: 114.775 bits (286), Expect = 7.749e-25
Identity = 55/91 (60.44%), Postives = 70/91 (76.92%), Query Frame = 3
Query:  132 SAAFHPDGLILGTGTSEALVKIWDVKSQANVAKFDGHVGAVTAISFSENGYYLATAAHDG-VKLWDLRKLKNFRSFESSDSETPTNSVDFD 401
            S  FHPDGLI GTG ++A+VKIWD+K+Q   A F GH  AV +I+FSENGYYLAT + DG VKLWDLRKLKN ++F +++ + P NS+ FD
Sbjct:  343 SIEFHPDGLIFGTGAADAVVKIWDLKNQTVAAAFPGHTAAVRSIAFSENGYYLATGSEDGEVKLWDLRKLKNLKTF-ANEEKQPINSLSFD 432          
BLAST of EY710768 vs. ExPASy Swiss-Prot
Match: PRP19_RAT (Pre-mRNA-processing factor 19 OS=Rattus norvegicus GN=Prpf19 PE=2 SV=2)

HSP 1 Score: 114.39 bits (285), Expect = 1.012e-24
Identity = 56/92 (60.87%), Postives = 69/92 (75.00%), Query Frame = 3
Query:  129 TSAAFHPDGLILGTGTSEALVKIWDVKSQANVAKFDGHVGAVTAISFSENGYYLATAAHD-GVKLWDLRKLKNFRSFESSDSETPTNSVDFD 401
            T A FHPDGLI GTGT ++ +KIWD+K + NVA F GH G +T+I+FSENGYYLATAA D  VKLWDLRKLKNF++ +  D+     S+ FD
Sbjct:  354 TCAQFHPDGLIFGTGTMDSQIKIWDLKERTNVANFPGHSGPITSIAFSENGYYLATAADDSSVKLWDLRKLKNFKTLQ-LDNNFEVKSLIFD 444          
BLAST of EY710768 vs. ExPASy Swiss-Prot
Match: PRP19_MOUSE (Pre-mRNA-processing factor 19 OS=Mus musculus GN=Prpf19 PE=2 SV=1)

HSP 1 Score: 114.39 bits (285), Expect = 1.012e-24
Identity = 56/92 (60.87%), Postives = 69/92 (75.00%), Query Frame = 3
Query:  129 TSAAFHPDGLILGTGTSEALVKIWDVKSQANVAKFDGHVGAVTAISFSENGYYLATAAHD-GVKLWDLRKLKNFRSFESSDSETPTNSVDFD 401
            T A FHPDGLI GTGT ++ +KIWD+K + NVA F GH G +T+I+FSENGYYLATAA D  VKLWDLRKLKNF++ +  D+     S+ FD
Sbjct:  354 TCAQFHPDGLIFGTGTMDSQIKIWDLKERTNVANFPGHSGPITSIAFSENGYYLATAADDSSVKLWDLRKLKNFKTLQ-LDNNFEVKSLIFD 444          
BLAST of EY710768 vs. ExPASy Swiss-Prot
Match: PRP19_HUMAN (Pre-mRNA-processing factor 19 OS=Homo sapiens GN=PRPF19 PE=1 SV=1)

HSP 1 Score: 114.39 bits (285), Expect = 1.012e-24
Identity = 56/92 (60.87%), Postives = 69/92 (75.00%), Query Frame = 3
Query:  129 TSAAFHPDGLILGTGTSEALVKIWDVKSQANVAKFDGHVGAVTAISFSENGYYLATAAHD-GVKLWDLRKLKNFRSFESSDSETPTNSVDFD 401
            T A FHPDGLI GTGT ++ +KIWD+K + NVA F GH G +T+I+FSENGYYLATAA D  VKLWDLRKLKNF++ +  D+     S+ FD
Sbjct:  354 TCAQFHPDGLIFGTGTMDSQIKIWDLKERTNVANFPGHSGPITSIAFSENGYYLATAADDSSVKLWDLRKLKNFKTLQ-LDNNFEVKSLIFD 444          
BLAST of EY710768 vs. ExPASy Swiss-Prot
Match: PRP19_CHICK (Pre-mRNA-processing factor 19 OS=Gallus gallus GN=PRPF19 PE=1 SV=1)

HSP 1 Score: 114.39 bits (285), Expect = 1.012e-24
Identity = 56/92 (60.87%), Postives = 69/92 (75.00%), Query Frame = 3
Query:  129 TSAAFHPDGLILGTGTSEALVKIWDVKSQANVAKFDGHVGAVTAISFSENGYYLATAAHD-GVKLWDLRKLKNFRSFESSDSETPTNSVDFD 401
            T A FHPDGLI GTGT ++ +KIWD+K + NVA F GH G +T+I+FSENGYYLATAA D  VKLWDLRKLKNF++ +  D+     S+ FD
Sbjct:  355 TCAQFHPDGLIFGTGTMDSQIKIWDLKERTNVANFPGHSGPITSIAFSENGYYLATAADDSSVKLWDLRKLKNFKTLQ-LDNNFEVKSLIFD 445          
BLAST of EY710768 vs. ExPASy Swiss-Prot
Match: PRP19_BOVIN (Pre-mRNA-processing factor 19 OS=Bos taurus GN=PRPF19 PE=2 SV=1)

HSP 1 Score: 114.39 bits (285), Expect = 1.012e-24
Identity = 56/92 (60.87%), Postives = 69/92 (75.00%), Query Frame = 3
Query:  129 TSAAFHPDGLILGTGTSEALVKIWDVKSQANVAKFDGHVGAVTAISFSENGYYLATAAHD-GVKLWDLRKLKNFRSFESSDSETPTNSVDFD 401
            T A FHPDGLI GTGT ++ +KIWD+K + NVA F GH G +T+I+FSENGYYLATAA D  VKLWDLRKLKNF++ +  D+     S+ FD
Sbjct:  354 TCAQFHPDGLIFGTGTMDSQIKIWDLKERTNVANFPGHSGPITSIAFSENGYYLATAADDSSVKLWDLRKLKNFKTLQ-LDNNFEVKSLIFD 444          
BLAST of EY710768 vs. ExPASy Swiss-Prot
Match: PRP19_DICDI (Pre-mRNA-processing factor 19 homolog OS=Dictyostelium discoideum GN=prp19 PE=3 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 3.263e-15
Identity = 47/98 (47.96%), Postives = 59/98 (60.20%), Query Frame = 3
Query:  126 YTSAAFHPDGLILGTGTSEALVKIWDVKSQANVAKFDGHVGAVTAISFSENGYYLATAAHDGVKLWDLRKLKNFRSFESSDSETPT------NSVDFD 401
            YTS AFHPDG+    GT   +VKI+D+KS+ N   F G   AV  ISFSENGYYL  A ++ VKL+DLRK     +  S D +T T       S++FD
Sbjct:  355 YTSVAFHPDGMFFAAGTQNGVVKIFDLKSKVNSFNFQGLSTAVNCISFSENGYYLTAADNNTVKLFDLRKA---ATKNSPDIQTITLDNQQIKSINFD 449          
BLAST of EY710768 vs. ExPASy Swiss-Prot
Match: YIDC_SCHPO (Uncharacterized WD repeat-containing protein C227.12 OS=Schizosaccharomyces pombe GN=SPAC227.12 PE=2 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 7.523e-12
Identity = 33/78 (42.31%), Postives = 53/78 (67.95%), Query Frame = 3
Query:  108 DGRPEGYTSAAFHPDGLILGTGTSEALVKIWDVKSQANVAKFDGHVGAVTAISFSENGYYLAT-AAHDGVKLWDLRKL 338
            +G  EG  S A  PDG ++ +G ++A+ +IWD++S  ++   D H+  + A+++S NGY LAT +A D VK+WDLRK+
Sbjct:  304 EGHSEGIFSIACQPDGSLVSSGGNDAIGRIWDLRSGKSIMVLDEHIRQIVAMAWSPNGYQLATSSADDTVKIWDLRKV 381          
The following BLAST results are available for this feature:
BLAST of EY710768 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 10
Match NameE-valueIdentityDescription
PR19B_ARATH9.453e-4474.53Pre-mRNA-processing factor 19 homolog 2 OS=Arabido... [more]
PR19A_ARATH2.872e-3969.52Pre-mRNA-processing factor 19 homolog 1 OS=Arabido... [more]
PRP19_CAEEL7.749e-2560.44Pre-mRNA-processing factor 19 homolog OS=Caenorhab... [more]
PRP19_RAT1.012e-2460.87Pre-mRNA-processing factor 19 OS=Rattus norvegicus... [more]
PRP19_MOUSE1.012e-2460.87Pre-mRNA-processing factor 19 OS=Mus musculus GN=P... [more]
PRP19_HUMAN1.012e-2460.87Pre-mRNA-processing factor 19 OS=Homo sapiens GN=P... [more]
PRP19_CHICK1.012e-2460.87Pre-mRNA-processing factor 19 OS=Gallus gallus GN=... [more]
PRP19_BOVIN1.012e-2460.87Pre-mRNA-processing factor 19 OS=Bos taurus GN=PRP... [more]
PRP19_DICDI3.263e-1547.96Pre-mRNA-processing factor 19 homolog OS=Dictyoste... [more]
YIDC_SCHPO7.523e-1242.31Uncharacterized WD repeat-containing protein C227.... [more]
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Properties
Property NameValue
Genbank descriptionCS00-C3-701-086-H11-CT.F Sweet orange fruit, development stadium (2 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY710768 ID=EY710768; Name=EY710768; organism=Citrus sinensis; type=EST; length=969bp
TGAAAAATAACAAAAGAAATTAACATGTTGTAACGAAAAATTTATTGTCC
TCCACCTCTGGACAAGCGGAATAACATTTATTTCTGCAGGTTTCAGATGC
TGGAACCGACGGTAGACCTGAAGGTTATACATCTGCAGCTTTTCATCCTG
ATGGTCTCATCCTTGGAACGGGCACCTCAGAAGCTCTTGTTAAGATTTGG
GATGTGAAAAGTCAGGCAAATGTGGCGAAATTTGATGGACATGTTGGAGC
AGTTACAGCCATATCCTTTTCAGAAAATGGTTACTACCTTGCGACGGCAG
CCCATGATGGTGTGAAGCTGTGGGACCTGCGTAAATTGAAGAACTTCCGG
TCATTTGAATCTTCTGATTCTGAGACACCTACCAACTCAGTGGATTTCGA
CCCATAGTGGATCTTACCTCGCAGTTGGCAGTGCAGATATAAGAGTCTAC
CCAGTGGCCAGTGTTAAAAGCTGAATTGGAAATTTGTATCAAAACTTTTT
CCTGATTTTACCAGGCACAAGTAAAGCAAATTGTGTGAAATTTTGGTCCA
AAATGCTAAAAACTTTGGCTGGGGGAATCAAGGGAACACCATCCACCTGG
TATTTTGGGTCCTGCCCGGGAAATGATGCCTCCCTCAAAATCCCTAATAG
AATTTCTAAAATCTAACCCAATTTGAGAAGGGGGGGCCACTGCCATTTTT
TTGCCAACCACCATTAATTGTTTTTTGTTCCCATTGGAAAAATAACCTAG
GTTTTGGGGGGAGGGGGCGGCAAATTCCCTGGGTCCCCTTTTCATGGTTT
CCTGGATACCCATAATTGGTGGGATAAATGGGGTTTCAAACACCGGGGGA
TCCTAGGTTTTTTGGAGGGGAAAAAAAAAAGAGAGGGAGAAAAGGTGTGT
TTTTTTATATCACCCCAAATATTTTTTGACTATACACCTACTCCACTGGG
TTAAAAAATTTATATAGAA
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