EY710768
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of EY710768 vs. ExPASy Swiss-Prot
Match: PR19B_ARATH (Pre-mRNA-processing factor 19 homolog 2 OS=Arabidopsis thaliana GN=PRP19B PE=1 SV=3) HSP 1 Score: 157.532 bits (397), Expect = 9.453e-44 Identity = 79/106 (74.53%), Postives = 91/106 (85.85%), Query Frame = 3 Query: 87 QVSDAGTDGRPEGYTSAAFHPDGLILGTGTSEALVKIWDVKSQANVAKFDGHVGAVTAISFSENGYYLATAAHDGVKLWDLRKLKNFRSFESSDSETPTNSVDFDP 404 QVSD D + YT+AAFHPDGLILGTGTS+++VKIWDVKSQANVAKFDGH G VTAISFSENGY+LATAA DGV+LWDLRKL+NF+SF S+D+ NSV+FDP Sbjct: 346 QVSD---DSKNVDYTAAAFHPDGLILGTGTSQSVVKIWDVKSQANVAKFDGHTGEVTAISFSENGYFLATAAEDGVRLWDLRKLRNFKSFLSADA----NSVEFDP 444 HSP 2 Score: 41.5874 bits (96), Expect = 9.453e-44 Identity = 25/51 (49.02%), Postives = 30/51 (58.82%), Query Frame = 1 Query: 406 SGSYLAVGSADIRVYPVASVKS*IGNLYQNFFLILP---GTSKANCVKFWS 549 SGSYL + ++DI+VY ASVK+ N LP GT KA CVKF S Sbjct: 445 SGSYLGIAASDIKVYQTASVKA-----EWNLIKTLPDLSGTGKATCVKFGS 490
BLAST of EY710768 vs. ExPASy Swiss-Prot
Match: PR19A_ARATH (Pre-mRNA-processing factor 19 homolog 1 OS=Arabidopsis thaliana GN=PRP19A PE=1 SV=1) HSP 1 Score: 145.976 bits (367), Expect = 2.872e-39 Identity = 73/105 (69.52%), Postives = 88/105 (83.81%), Query Frame = 3 Query: 87 QVSDAGTDGRPEGYTSAAFHPDGLILGTGTSEALVKIWDVKSQANVAKFDGHVGAVTAISFSENGYYLATAAHDGVKLWDLRKLKNFRSFESSDSETPTNSVDFD 401 QV+DA + YT+AAFHPDGLILGTGT++++VKIWDVKSQANVAKF GH G +T+ISFSENGY+LATAA DGV+LWDLRKLKNFR+F+ D+ NSV+FD Sbjct: 346 QVTDASEND--VNYTAAAFHPDGLILGTGTAQSIVKIWDVKSQANVAKFGGHNGEITSISFSENGYFLATAALDGVRLWDLRKLKNFRTFDFPDA----NSVEFD 444 HSP 2 Score: 38.1206 bits (87), Expect = 2.872e-39 Identity = 24/50 (48.00%), Postives = 29/50 (58.00%), Query Frame = 1 Query: 403 HSGSYLAVGSADIRVYPVASVKS*IGNLYQNFFLILP---GTSKANCVKF 543 HSGSYL + ++DIRV+ ASVK+ N LP GT KA VKF Sbjct: 445 HSGSYLGIAASDIRVFQAASVKA-----EWNPIKTLPDLSGTGKATSVKF 489
BLAST of EY710768 vs. ExPASy Swiss-Prot
Match: PRP19_CAEEL (Pre-mRNA-processing factor 19 homolog OS=Caenorhabditis elegans GN=T10F2.4 PE=2 SV=2) HSP 1 Score: 114.775 bits (286), Expect = 7.749e-25 Identity = 55/91 (60.44%), Postives = 70/91 (76.92%), Query Frame = 3 Query: 132 SAAFHPDGLILGTGTSEALVKIWDVKSQANVAKFDGHVGAVTAISFSENGYYLATAAHDG-VKLWDLRKLKNFRSFESSDSETPTNSVDFD 401 S FHPDGLI GTG ++A+VKIWD+K+Q A F GH AV +I+FSENGYYLAT + DG VKLWDLRKLKN ++F +++ + P NS+ FD Sbjct: 343 SIEFHPDGLIFGTGAADAVVKIWDLKNQTVAAAFPGHTAAVRSIAFSENGYYLATGSEDGEVKLWDLRKLKNLKTF-ANEEKQPINSLSFD 432
BLAST of EY710768 vs. ExPASy Swiss-Prot
Match: PRP19_RAT (Pre-mRNA-processing factor 19 OS=Rattus norvegicus GN=Prpf19 PE=2 SV=2) HSP 1 Score: 114.39 bits (285), Expect = 1.012e-24 Identity = 56/92 (60.87%), Postives = 69/92 (75.00%), Query Frame = 3 Query: 129 TSAAFHPDGLILGTGTSEALVKIWDVKSQANVAKFDGHVGAVTAISFSENGYYLATAAHD-GVKLWDLRKLKNFRSFESSDSETPTNSVDFD 401 T A FHPDGLI GTGT ++ +KIWD+K + NVA F GH G +T+I+FSENGYYLATAA D VKLWDLRKLKNF++ + D+ S+ FD Sbjct: 354 TCAQFHPDGLIFGTGTMDSQIKIWDLKERTNVANFPGHSGPITSIAFSENGYYLATAADDSSVKLWDLRKLKNFKTLQ-LDNNFEVKSLIFD 444
BLAST of EY710768 vs. ExPASy Swiss-Prot
Match: PRP19_MOUSE (Pre-mRNA-processing factor 19 OS=Mus musculus GN=Prpf19 PE=2 SV=1) HSP 1 Score: 114.39 bits (285), Expect = 1.012e-24 Identity = 56/92 (60.87%), Postives = 69/92 (75.00%), Query Frame = 3 Query: 129 TSAAFHPDGLILGTGTSEALVKIWDVKSQANVAKFDGHVGAVTAISFSENGYYLATAAHD-GVKLWDLRKLKNFRSFESSDSETPTNSVDFD 401 T A FHPDGLI GTGT ++ +KIWD+K + NVA F GH G +T+I+FSENGYYLATAA D VKLWDLRKLKNF++ + D+ S+ FD Sbjct: 354 TCAQFHPDGLIFGTGTMDSQIKIWDLKERTNVANFPGHSGPITSIAFSENGYYLATAADDSSVKLWDLRKLKNFKTLQ-LDNNFEVKSLIFD 444
BLAST of EY710768 vs. ExPASy Swiss-Prot
Match: PRP19_HUMAN (Pre-mRNA-processing factor 19 OS=Homo sapiens GN=PRPF19 PE=1 SV=1) HSP 1 Score: 114.39 bits (285), Expect = 1.012e-24 Identity = 56/92 (60.87%), Postives = 69/92 (75.00%), Query Frame = 3 Query: 129 TSAAFHPDGLILGTGTSEALVKIWDVKSQANVAKFDGHVGAVTAISFSENGYYLATAAHD-GVKLWDLRKLKNFRSFESSDSETPTNSVDFD 401 T A FHPDGLI GTGT ++ +KIWD+K + NVA F GH G +T+I+FSENGYYLATAA D VKLWDLRKLKNF++ + D+ S+ FD Sbjct: 354 TCAQFHPDGLIFGTGTMDSQIKIWDLKERTNVANFPGHSGPITSIAFSENGYYLATAADDSSVKLWDLRKLKNFKTLQ-LDNNFEVKSLIFD 444
BLAST of EY710768 vs. ExPASy Swiss-Prot
Match: PRP19_CHICK (Pre-mRNA-processing factor 19 OS=Gallus gallus GN=PRPF19 PE=1 SV=1) HSP 1 Score: 114.39 bits (285), Expect = 1.012e-24 Identity = 56/92 (60.87%), Postives = 69/92 (75.00%), Query Frame = 3 Query: 129 TSAAFHPDGLILGTGTSEALVKIWDVKSQANVAKFDGHVGAVTAISFSENGYYLATAAHD-GVKLWDLRKLKNFRSFESSDSETPTNSVDFD 401 T A FHPDGLI GTGT ++ +KIWD+K + NVA F GH G +T+I+FSENGYYLATAA D VKLWDLRKLKNF++ + D+ S+ FD Sbjct: 355 TCAQFHPDGLIFGTGTMDSQIKIWDLKERTNVANFPGHSGPITSIAFSENGYYLATAADDSSVKLWDLRKLKNFKTLQ-LDNNFEVKSLIFD 445
BLAST of EY710768 vs. ExPASy Swiss-Prot
Match: PRP19_BOVIN (Pre-mRNA-processing factor 19 OS=Bos taurus GN=PRPF19 PE=2 SV=1) HSP 1 Score: 114.39 bits (285), Expect = 1.012e-24 Identity = 56/92 (60.87%), Postives = 69/92 (75.00%), Query Frame = 3 Query: 129 TSAAFHPDGLILGTGTSEALVKIWDVKSQANVAKFDGHVGAVTAISFSENGYYLATAAHD-GVKLWDLRKLKNFRSFESSDSETPTNSVDFD 401 T A FHPDGLI GTGT ++ +KIWD+K + NVA F GH G +T+I+FSENGYYLATAA D VKLWDLRKLKNF++ + D+ S+ FD Sbjct: 354 TCAQFHPDGLIFGTGTMDSQIKIWDLKERTNVANFPGHSGPITSIAFSENGYYLATAADDSSVKLWDLRKLKNFKTLQ-LDNNFEVKSLIFD 444
BLAST of EY710768 vs. ExPASy Swiss-Prot
Match: PRP19_DICDI (Pre-mRNA-processing factor 19 homolog OS=Dictyostelium discoideum GN=prp19 PE=3 SV=1) HSP 1 Score: 82.8037 bits (203), Expect = 3.263e-15 Identity = 47/98 (47.96%), Postives = 59/98 (60.20%), Query Frame = 3 Query: 126 YTSAAFHPDGLILGTGTSEALVKIWDVKSQANVAKFDGHVGAVTAISFSENGYYLATAAHDGVKLWDLRKLKNFRSFESSDSETPT------NSVDFD 401 YTS AFHPDG+ GT +VKI+D+KS+ N F G AV ISFSENGYYL A ++ VKL+DLRK + S D +T T S++FD Sbjct: 355 YTSVAFHPDGMFFAAGTQNGVVKIFDLKSKVNSFNFQGLSTAVNCISFSENGYYLTAADNNTVKLFDLRKA---ATKNSPDIQTITLDNQQIKSINFD 449
BLAST of EY710768 vs. ExPASy Swiss-Prot
Match: YIDC_SCHPO (Uncharacterized WD repeat-containing protein C227.12 OS=Schizosaccharomyces pombe GN=SPAC227.12 PE=2 SV=1) HSP 1 Score: 71.633 bits (174), Expect = 7.523e-12 Identity = 33/78 (42.31%), Postives = 53/78 (67.95%), Query Frame = 3 Query: 108 DGRPEGYTSAAFHPDGLILGTGTSEALVKIWDVKSQANVAKFDGHVGAVTAISFSENGYYLAT-AAHDGVKLWDLRKL 338 +G EG S A PDG ++ +G ++A+ +IWD++S ++ D H+ + A+++S NGY LAT +A D VK+WDLRK+ Sbjct: 304 EGHSEGIFSIACQPDGSLVSSGGNDAIGRIWDLRSGKSIMVLDEHIRQIVAMAWSPNGYQLATSSADDTVKIWDLRKV 381 The following BLAST results are available for this feature:
BLAST of EY710768 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 10
Properties
Sequences
The
following sequences are available for this feature:
EST sequence >EY710768 ID=EY710768; Name=EY710768; organism=Citrus sinensis; type=EST; length=969bpback to top |