EY686123

Overview
NameEY686123
Unique NameEY686123
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length811
Libraries
Library NameType
Sweet orange bark, greenhouse plantcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY686123 vs. ExPASy Swiss-Prot
Match: PSAD_NICSY (Photosystem I reaction center subunit II, chloroplastic OS=Nicotiana sylvestris GN=psaD PE=2 SV=1)

HSP 1 Score: 225.328 bits (573), Expect = 1.621e-73
Identity = 119/151 (78.81%), Postives = 125/151 (82.78%), Query Frame = 2
Query:    8 MAATTQASLFAPANFSTTKSSAPWKQS-SSFSVRPLKHNAPRTNTIKAMAEGKTETPTKEAPVGFTPPELDPNTPSPIFGGSTGGLLRKAQVEEFYVITWESPKEQIFEMPTGGAAIMREGPNLLKLARKEQCLALGTRLRSKYKIKYQFY 457
            MA  TQASLF PA  S  KSSAPWKQS +SFS + LK        I+AMAE +  T   EAPVGFTPP+LDPNTPSPIFGGSTGGLLRKAQVEEFYVITWESPKEQIFEMPTGGAAIMREG NLLKLARKEQCLALGTRLRSKYKI Y+FY
Sbjct:    1 MAMATQASLFTPA-LSAPKSSAPWKQSLASFSPKQLKSTVSAPRPIRAMAE-EAATKEAEAPVGFTPPQLDPNTPSPIFGGSTGGLLRKAQVEEFYVITWESPKEQIFEMPTGGAAIMREGANLLKLARKEQCLALGTRLRSKYKINYRFY 149          

HSP 2 Score: 70.8626 bits (172), Expect = 1.621e-73
Identity = 33/56 (58.93%), Postives = 40/56 (71.43%), Query Frame = 3
Query:  438 RLSTSFTRVFPNGEVQYLHPQDGVYPDKVHPETEGVGQK*RPIGNNVRHIEAKLQG 605
            +++  F RVFPNGEVQYLHP+DGVYP+KV+   +GVGQ  R IG N   IE K  G
Sbjct:  143 KINYRFYRVFPNGEVQYLHPKDGVYPEKVNAGRQGVGQNFRSIGKNKSPIEVKFTG 198          
BLAST of EY686123 vs. ExPASy Swiss-Prot
Match: PSAD_SOLLC (Photosystem I reaction center subunit II, chloroplastic OS=Solanum lycopersicum GN=psaD PE=2 SV=1)

HSP 1 Score: 216.853 bits (551), Expect = 2.307e-72
Identity = 115/153 (75.16%), Postives = 121/153 (79.08%), Query Frame = 2
Query:    8 MAATTQASLFAPANFSTTKSSAPWKQSS-SFSV-RPLKHNAPRTNTIKAMAE-GKTETPTKEAPVGFTPPELDPNTPSPIFGGSTGGLLRKAQVEEFYVITWESPKEQIFEMPTGGAAIMREGPNLLKLARKEQCLALGTRLRSKYKIKYQFY 457
            MA  TQASLF P       ++APWKQS  SFS  + LK     T  I+AMAE     T  K AP GFTPP+LDPNTPSPIFGGSTGGLLRKAQVEEFYVITWESPKEQIFEMPTGGAAIMR+GPNLLKLARKEQCLALGTRLRSKYKI YQFY
Sbjct:    1 MAMATQASLFTPPLSVPKSTTAPWKQSLVSFSTPKQLKSTVSVTRPIRAMAEEAPAATEEKPAPAGFTPPQLDPNTPSPIFGGSTGGLLRKAQVEEFYVITWESPKEQIFEMPTGGAAIMRQGPNLLKLARKEQCLALGTRLRSKYKINYQFY 153          

HSP 2 Score: 75.485 bits (184), Expect = 2.307e-72
Identity = 35/56 (62.50%), Postives = 41/56 (73.21%), Query Frame = 3
Query:  438 RLSTSFTRVFPNGEVQYLHPQDGVYPDKVHPETEGVGQK*RPIGNNVRHIEAKLQG 605
            +++  F RVFPNGEVQYLHP+DGVYP+KV+P  EGVGQ  R IG N   IE K  G
Sbjct:  147 KINYQFYRVFPNGEVQYLHPKDGVYPEKVNPGREGVGQNFRSIGKNKSAIEVKFTG 202          
BLAST of EY686123 vs. ExPASy Swiss-Prot
Match: PSAD_CUCSA (Photosystem I reaction center subunit II, chloroplastic OS=Cucumis sativus GN=psaD PE=1 SV=1)

HSP 1 Score: 211.846 bits (538), Expect = 1.931e-71
Identity = 114/156 (73.08%), Postives = 123/156 (78.85%), Query Frame = 2
Query:    8 MAATTQASLFAPANFSTTKS---SAPWKQSSSFSV---RPLKHNAPRTNTIKAMAEGKTETPTKEAPVGFTPPELDPNTPSPIFGGSTGGLLRKAQVEEFYVITWESPKEQIFEMPTGGAAIMREGPNLLKLARKEQCLALGTRLRSKYKIKYQFY 457
            MA  TQA+LF P+  ST KS   S PWKQSS+ S    +P    A  + + K  AE +T     EAP GF+PPELDP+TPSPIF GSTGGLLRKAQVEEFYVITWESPKEQIFEMPTGGAAIMREGPNLLKLARKEQCLALGTRLRSKYKIKYQFY
Sbjct:    1 MAMATQATLFTPS-LSTPKSTGISIPWKQSSTLSFLTSKPHLKAASSSRSFKVSAEAETSV---EAPAGFSPPELDPSTPSPIFAGSTGGLLRKAQVEEFYVITWESPKEQIFEMPTGGAAIMREGPNLLKLARKEQCLALGTRLRSKYKIKYQFY 152          

HSP 2 Score: 77.411 bits (189), Expect = 1.931e-71
Identity = 36/56 (64.29%), Postives = 41/56 (73.21%), Query Frame = 3
Query:  438 RLSTSFTRVFPNGEVQYLHPQDGVYPDKVHPETEGVGQK*RPIGNNVRHIEAKLQG 605
            ++   F RVFPNGEVQYLHP+DGVYP+KV+P  EGVGQ  R IG NV  IE K  G
Sbjct:  146 KIKYQFYRVFPNGEVQYLHPKDGVYPEKVNPGREGVGQNFRSIGKNVSPIEVKFTG 201          
BLAST of EY686123 vs. ExPASy Swiss-Prot
Match: PSAD_SPIOL (Photosystem I reaction center subunit II, chloroplastic OS=Spinacia oleracea GN=psaD PE=1 SV=2)

HSP 1 Score: 211.075 bits (536), Expect = 1.762e-69
Identity = 115/160 (71.88%), Postives = 129/160 (80.62%), Query Frame = 2
Query:    8 MAATTQASLFAPANFST-----TKSSAPWKQSSS--FSVRPL-KHNAPRTNTIKAMAEGKTE--TPTKEAPVGFTPPELDPNTPSPIFGGSTGGLLRKAQVEEFYVITWESPKEQIFEMPTGGAAIMREGPNLLKLARKEQCLALGTRLRSKYKIKYQFY 457
            MA  TQA+LF+P++ S+     T+ +  +KQ S+  F+ +P  +H++ R     A AEGK    T TKEAP GFTPPELDPNTPSPIF GSTGGLLRKAQVEEFYVITWESPKEQIFEMPTGGAAIMREGPNLLKLARKEQCLALGTRLRSKYKIKYQFY
Sbjct:    1 MAMATQATLFSPSSLSSAKPIDTRLTTSFKQPSAVTFASKPASRHHSIRA---AAAAEGKAAAATETKEAPKGFTPPELDPNTPSPIFAGSTGGLLRKAQVEEFYVITWESPKEQIFEMPTGGAAIMREGPNLLKLARKEQCLALGTRLRSKYKIKYQFY 157          

HSP 2 Score: 71.633 bits (174), Expect = 1.762e-69
Identity = 33/56 (58.93%), Postives = 40/56 (71.43%), Query Frame = 3
Query:  438 RLSTSFTRVFPNGEVQYLHPQDGVYPDKVHPETEGVGQK*RPIGNNVRHIEAKLQG 605
            ++   F RVFP+GEVQYLHP+DGVYP+KV+P  +GVG   R IG NV  IE K  G
Sbjct:  151 KIKYQFYRVFPSGEVQYLHPKDGVYPEKVNPGRQGVGLNMRSIGKNVSPIEVKFTG 206          
BLAST of EY686123 vs. ExPASy Swiss-Prot
Match: PSAD2_ARATH (Photosystem I reaction center subunit II-2, chloroplastic OS=Arabidopsis thaliana GN=psaD2 PE=1 SV=1)

HSP 1 Score: 197.593 bits (501), Expect = 5.073e-66
Identity = 105/149 (70.47%), Postives = 113/149 (75.84%), Query Frame = 2
Query:   14 ATTQASLFAPANFSTTKSSAPWKQSSSFSVRPLKHNAPRTNTIKAMAEGKTETPT-KEAPVGFTPPELDPNTPSPIFGGSTGGLLRKAQVEEFYVITWESPKEQIFEMPTGGAAIMREGPNLLKLARKEQCLALGTRLRSKYKIKYQFY 457
            AT  A +F+PA  +TT S+       S S RP   +  +T       E  +  P  KEAPVGFTPP+LDPNTPSPIF GSTGGLLRKAQVEEFYVITW SPKEQIFEMPTGGAAIMREGPNLLKLARKEQCLALGTRLRSKYKI YQFY
Sbjct:    2 ATQAAGIFSPA-ITTTTSAVKKLHLFSSSHRPKSLSFTKTAIRAEKTESSSAAPAVKEAPVGFTPPQLDPNTPSPIFAGSTGGLLRKAQVEEFYVITWNSPKEQIFEMPTGGAAIMREGPNLLKLARKEQCLALGTRLRSKYKITYQFY 149          

HSP 2 Score: 73.559 bits (179), Expect = 5.073e-66
Identity = 34/56 (60.71%), Postives = 40/56 (71.43%), Query Frame = 3
Query:  438 RLSTSFTRVFPNGEVQYLHPQDGVYPDKVHPETEGVGQK*RPIGNNVRHIEAKLQG 605
            +++  F RVFPNGEVQYLHP+DGVYP+K +P  EGVG   R IG NV  IE K  G
Sbjct:  143 KITYQFYRVFPNGEVQYLHPKDGVYPEKANPGREGVGLNMRSIGKNVSPIEVKFTG 198          
BLAST of EY686123 vs. ExPASy Swiss-Prot
Match: PSAD1_ARATH (Photosystem I reaction center subunit II-1, chloroplastic OS=Arabidopsis thaliana GN=psaD1 PE=1 SV=1)

HSP 1 Score: 190.66 bits (483), Expect = 6.027e-64
Identity = 105/154 (68.18%), Postives = 112/154 (72.73%), Query Frame = 2
Query:   14 ATTQASLFAPANFSTTKSSAPWKQSSSFSV--RP----LKHNAPRTNTIKAMAEGKTETPTKEAPVGFTPPELDPNTPSPIFGGSTGGLLRKAQVEEFYVITWESPKEQIFEMPTGGAAIMREGPNLLKLARKEQCLALGTRLRSKYKIKYQFY 457
            AT  A +F  A   TT +++  K+   FS   RP        A R     + A       TKEAPVGFTPP+LDPNTPSPIF GSTGGLLRKAQVEEFYVITW SPKEQIFEMPTGGAAIMREGPNLLKLARKEQCLALGTRLRSKYKI YQFY
Sbjct:    2 ATQAAGIFNSA--ITTAATSGVKKLHFFSTTHRPKSLSFTKTAIRAEKTDSSAAAAAAPATKEAPVGFTPPQLDPNTPSPIFAGSTGGLLRKAQVEEFYVITWNSPKEQIFEMPTGGAAIMREGPNLLKLARKEQCLALGTRLRSKYKITYQFY 153          

HSP 2 Score: 73.559 bits (179), Expect = 6.027e-64
Identity = 34/56 (60.71%), Postives = 40/56 (71.43%), Query Frame = 3
Query:  438 RLSTSFTRVFPNGEVQYLHPQDGVYPDKVHPETEGVGQK*RPIGNNVRHIEAKLQG 605
            +++  F RVFPNGEVQYLHP+DGVYP+K +P  EGVG   R IG NV  IE K  G
Sbjct:  147 KITYQFYRVFPNGEVQYLHPKDGVYPEKANPGREGVGLNMRSIGKNVSPIEVKFTG 202          
BLAST of EY686123 vs. ExPASy Swiss-Prot
Match: PSAD_HORVU (Photosystem I reaction center subunit II, chloroplastic OS=Hordeum vulgare GN=psaD PE=1 SV=1)

HSP 1 Score: 179.874 bits (455), Expect = 1.017e-60
Identity = 101/157 (64.33%), Postives = 108/157 (68.79%), Query Frame = 2
Query:    8 MAATTQASL----FAPANFSTTKSSAPWKQSSSFSVR---PLKHNAPRTNTIKAMAEGKTETPTKEAPVGFTPPELDPNTPSPIFGGSTGGLLRKAQVEEFYVITWESPKEQIFEMPTGGAAIMREGPNLLKLARKEQCLALGTRLRSKYKIKYQFY 457
            MA  TQAS        A +S +    P   +   S R   PL   AP T    A        P + AP GF PP+LDP+TPSPIFGGSTGGLLRKAQVEEFYVITW SPKEQ+FEMPTGGAAIMREGPNLLKLARKEQCLALG RLRSKYKI YQFY
Sbjct:    1 MAMATQASAATRHLITAAWSPSAKPRPATLAMPSSARGPAPLFAAAPDTPAPAA-------PPAEPAPAGFVPPQLDPSTPSPIFGGSTGGLLRKAQVEEFYVITWTSPKEQVFEMPTGGAAIMREGPNLLKLARKEQCLALGNRLRSKYKIAYQFY 150          

HSP 2 Score: 73.559 bits (179), Expect = 1.017e-60
Identity = 34/56 (60.71%), Postives = 41/56 (73.21%), Query Frame = 3
Query:  438 RLSTSFTRVFPNGEVQYLHPQDGVYPDKVHPETEGVGQK*RPIGNNVRHIEAKLQG 605
            +++  F RVFPNGEVQYLHP+DGVYP+KV+   +GVGQ  R IG NV  IE K  G
Sbjct:  144 KIAYQFYRVFPNGEVQYLHPKDGVYPEKVNAGRQGVGQNFRSIGKNVSPIEVKFTG 199          
BLAST of EY686123 vs. ExPASy Swiss-Prot
Match: PSAD_CHLRE (Photosystem I reaction center subunit II, chloroplastic OS=Chlamydomonas reinhardtii GN=psaD PE=1 SV=1)

HSP 1 Score: 145.976 bits (367), Expect = 1.364e-47
Identity = 79/134 (58.96%), Postives = 96/134 (71.64%), Query Frame = 2
Query:   59 TKSSAPWKQSSSFSVRPLKHNAPRTNTIKAMAEGKTETPTKEAPV-GFTPPELDPNTPSPIFGGSTGGLLRKAQVEEFYVITWESPKEQIFEMPTGGAAIMREGPNLLKLARKEQCLALGTRLRSKYKIKYQFY 457
            T++ A  + SS  +V   +  A R   ++A AE       K A    +T P L+P+TPSPIFGGSTGGLLRKAQ EEFYVITWE+ KEQIFEMPTGGAAIMR+GPNLLK  +KEQCLAL T+LR+K+K+   FY
Sbjct:    7 TQAPAATRASSRVAVAA-RPAARRAVVVRAEAEAAPAAAKKAAEKPAWTVPTLNPDTPSPIFGGSTGGLLRKAQTEEFYVITWEAKKEQIFEMPTGGAAIMRQGPNLLKFGKKEQCLALTTQLRNKFKLTPCFY 139          

HSP 2 Score: 63.5438 bits (153), Expect = 1.364e-47
Identity = 30/56 (53.57%), Postives = 37/56 (66.07%), Query Frame = 3
Query:  438 RLSTSFTRVFPNGEVQYLHPQDGVYPDKVHPETEGVGQK*RPIGNNVRHIEAKLQG 605
            +L+  F RVFP+G+VQYLHP DGVYP+KV+    G  Q  R IG NV  I+ K  G
Sbjct:  133 KLTPCFYRVFPDGKVQYLHPADGVYPEKVNAGRVGANQNMRRIGQNVNPIKVKFSG 188          
BLAST of EY686123 vs. ExPASy Swiss-Prot
Match: PSAD_CYAPA (Photosystem I reaction center subunit II, cyanelle OS=Cyanophora paradoxa GN=psaD PE=2 SV=1)

HSP 1 Score: 129.413 bits (324), Expect = 2.393e-40
Identity = 75/151 (49.67%), Postives = 92/151 (60.93%), Query Frame = 2
Query:   53 STTKSSAPWKQSSSF------SVRPLKHNAPRTNTIKAMAEGKTETPTKE----APVGFTPPELDPNTPSPIFGGSTGGLLRKAQVEEFYVITWESPKEQIFEMPTGGAAIMREGPNLLKLARKEQCLALGTRLRSKYKIK----YQFYPS 463
            S T SSA   Q  +F      + +     AP    ++A  E        E    AP  F+ P L+ N P+PIFGGSTGGLLRKA+VEEFY ITW    E +FE+PTGGAAIMR G NLL+LARKEQC+ALG +L+ K+KI     Y+ YPS
Sbjct:   16 SATLSSAVCAQKKAFFGAQVAAKKTTFEAAPARFIVRAEEEEAAPAEKVEKKAAAPKPFSVPTLNLNAPTPIFGGSTGGLLRKAEVEEFYSITWTGKSETVFELPTGGAAIMRAGENLLRLARKEQCIALGAQLKDKFKITDYKIYRVYPS 166          

HSP 2 Score: 55.8398 bits (133), Expect = 2.393e-40
Identity = 25/49 (51.02%), Postives = 34/49 (69.39%), Query Frame = 3
Query:  459 RVFPNGEVQYLHPQDGVYPDKVHPETEGVGQK*RPIGNNVRHIEAKLQG 605
            RV+P+GEVQ+LHP+DGV+P+KV+P    VG   R IG N    + K +G
Sbjct:  162 RVYPSGEVQFLHPKDGVFPEKVNPGRVAVGSNKRRIGQNPDPAKLKFKG 210          
BLAST of EY686123 vs. ExPASy Swiss-Prot
Match: PSAD_ODOSI (Photosystem I reaction center subunit II OS=Odontella sinensis GN=psaD PE=3 SV=1)

HSP 1 Score: 115.546 bits (288), Expect = 9.534e-36
Identity = 62/88 (70.45%), Postives = 68/88 (77.27%), Query Frame = 2
Query:  212 LDPNTPSPIFGGSTGGLLRKAQVEEFYVITWESPKEQIFEMPTGGAAIMREGPNLLKLARKEQCLALGTRLR----SKYKIKYQFYPS 463
            L+  TP P FGGSTGG LR A+VEE Y ITW S KEQIFEMPTGGAAIMR G NLL LARKEQCLALGT+LR    + YKI Y+ +PS
Sbjct:    3 LNLQTPFPTFGGSTGGWLRAAEVEEKYAITWTSKKEQIFEMPTGGAAIMRNGENLLYLARKEQCLALGTQLRTFKINDYKI-YRIFPS 89          

HSP 2 Score: 54.299 bits (129), Expect = 9.534e-36
Identity = 24/49 (48.98%), Postives = 31/49 (63.27%), Query Frame = 3
Query:  459 RVFPNGEVQYLHPQDGVYPDKVHPETEGVGQK*RPIGNNVRHIEAKLQG 605
            R+FP+GEVQYLHP+DGV+P+KV+P    V  +   IG N      K  G
Sbjct:   85 RIFPSGEVQYLHPKDGVFPEKVNPGRTSVNSRGFSIGKNPNPASIKFSG 133          
The following BLAST results are available for this feature:
BLAST of EY686123 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 26
Match NameE-valueIdentityDescription
PSAD_NICSY1.621e-7378.81Photosystem I reaction center subunit II, chloropl... [more]
PSAD_SOLLC2.307e-7275.16Photosystem I reaction center subunit II, chloropl... [more]
PSAD_CUCSA1.931e-7173.08Photosystem I reaction center subunit II, chloropl... [more]
PSAD_SPIOL1.762e-6971.88Photosystem I reaction center subunit II, chloropl... [more]
PSAD2_ARATH5.073e-6670.47Photosystem I reaction center subunit II-2, chloro... [more]
PSAD1_ARATH6.027e-6468.18Photosystem I reaction center subunit II-1, chloro... [more]
PSAD_HORVU1.017e-6064.33Photosystem I reaction center subunit II, chloropl... [more]
PSAD_CHLRE1.364e-4758.96Photosystem I reaction center subunit II, chloropl... [more]
PSAD_CYAPA2.393e-4049.67Photosystem I reaction center subunit II, cyanelle... [more]
PSAD_ODOSI9.534e-3670.45Photosystem I reaction center subunit II OS=Odonte... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionCS00-C2-003-034-H02-CT.F Sweet orange bark, greenhouse plant Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY686123 ID=EY686123; Name=EY686123; organism=Citrus sinensis; type=EST; length=811bp
AATGGCCATGGCCGCAACAACTCAAGCCTCTCTCTTCGCACCGGCCAACT
TCTCCACCACCAAATCCTCTGCGCCGTGGAAGCAATCATCATCATTTTCA
GTAAGGCCACTAAAACATAATGCCCCACGTACCAACACCATCAAGGCCAT
GGCTGAGGGAAAAACAGAGACACCCACAAAAGAGGCTCCGGTGGGCTTCA
CCCCACCAGAACTGGACCCCAACACCCCATCTCCGATCTTCGGAGGCAGC
ACCGGCGGGCTGCTGCGGAAGGCTCAGGTGGAAGAGTTTTATGTGATCAC
ATGGGAGTCTCCTAAGGAGCAAATATTTGAAATGCCCACTGGGGGTGCGG
CCATTATGAGAGAAGGTCCGAATTTGCTGAAGCTGGCTAGGAAAGAGCAG
TGCTTGGCTCTGGGGACAAGGCTGAGGTCCAAGTACAAGATTAAGTACCA
GTTTTACCCGAGTGTTTCCCAATGGAGAGGTTCAGTATTTGCATCCCCAA
GATGGTGTTTATCCTGACAAAGTGCACCCCGAAACGGAAGGAGTTGGACA
AAAATAAAGGCCTATTGGCAACAATGTAAGACATATAGAGGCCAAACTAC
AAGGAGGCAAGGAGACTAACTGGAAACGAAAATCGAAACCAGAAAAGCGA
ACCCAACAGGAAGAAATGGGAACCAATGGCAAGATCCTCAGTGGAAGCCA
AGCAGGGGCGAGGGGACACACAACATTGAAGAAAGCCCACAATAAACGAA
CACAGAAGCATAAAACAAGAAACAGCCCACAGAGCTAAAAAAAAGAAAGA
AGAACAAGAAA
back to top