EY710764

Overview
NameEY710764
Unique NameEY710764
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length1051
Libraries
Library NameType
Sweet orange fruit, development stadium (2 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY710764 vs. ExPASy Swiss-Prot
Match: RCA1_LARTR (Ribulose bisphosphate carboxylase/oxygenase activase 1, chloroplastic OS=Larrea tridentata GN=RCA1 PE=2 SV=1)

HSP 1 Score: 214.542 bits (545), Expect = 8.063e-55
Identity = 111/163 (68.10%), Postives = 124/163 (76.07%), Query Frame = 3
Query:   21 YWAPTREDRIGVCKGIFRNDNVADDDIVKLVDTFPGQSIDFFGALRARVYDDEVRKWXXXXXXXXXXKSLVNSKEAAPTFEQPRMTMEKLLEYGNMIVQEQENVKRVQLADQYLSEAALGETNEDAIQSGG-GGGEAPHQMKCSNSRKEVLILLQKNFDPTAR 506
            YWAPTREDRIGVCKGIFR DNVADDDIVKLVDTFPGQSIDFFGALRARVY DEVRKW          K LVNSKE  P+FEQP+MT++KLL YG M+VQEQENVKRVQLAD+Y+SEAALG+ N DAI+ G   GG+A  Q+      +        N+DPTAR
Sbjct:  304 YWAPTREDRIGVCKGIFRTDNVADDDIVKLVDTFPGQSIDFFGALRARVYHDEVRKWVSEVGVDTIGKKLVNSKEGPPSFEQPKMTIDKLLGYGGMLVQEQENVKRVQLADKYMSEAALGDANNDAIKRGTFYGGQAAQQVGNVPVPEGCTDPQATNYDPTAR 466          
BLAST of EY710764 vs. ExPASy Swiss-Prot
Match: RCA_ORYSJ (Ribulose bisphosphate carboxylase/oxygenase activase, chloroplastic OS=Oryza sativa subsp. japonica GN=RCA PE=1 SV=2)

HSP 1 Score: 213.001 bits (541), Expect = 2.346e-54
Identity = 105/162 (64.81%), Postives = 124/162 (76.54%), Query Frame = 3
Query:   21 YWAPTREDRIGVCKGIFRNDNVADDDIVKLVDTFPGQSIDFFGALRARVYDDEVRKWXXXXXXXXXXKSLVNSKEAAPTFEQPRMTMEKLLEYGNMIVQEQENVKRVQLADQYLSEAALGETNEDAIQSGGGGGEAPHQMKCSNSRKEVLILLQKNFDPTAR 506
            YWAPTR+DR+GVCKGIFR DNV D+DIVK+VD+FPGQSIDFFGALRARVYDDEVRKW          K LVNS+E  P FEQP+MT+EKL+EYG M+V+EQENVKRVQLA+QYLSEAALG+ N DA+++G   G+   Q       +     + KNFDPTAR
Sbjct:  295 YWAPTRDDRVGVCKGIFRTDNVPDEDIVKIVDSFPGQSIDFFGALRARVYDDEVRKWVSDTGVENIGKRLVNSREGPPEFEQPKMTIEKLMEYGYMLVKEQENVKRVQLAEQYLSEAALGDANSDAMKTGSFYGQGAQQAGNLPVPEGCTDPVAKNFDPTAR 456          
BLAST of EY710764 vs. ExPASy Swiss-Prot
Match: RCA_MALDO (Ribulose bisphosphate carboxylase/oxygenase activase, chloroplastic OS=Malus domestica GN=RCA PE=2 SV=1)

HSP 1 Score: 211.846 bits (538), Expect = 5.226e-54
Identity = 103/130 (79.23%), Postives = 112/130 (86.15%), Query Frame = 3
Query:   21 YWAPTREDRIGVCKGIFRNDNVADDDIVKLVDTFPGQSIDFFGALRARVYDDEVRKWXXXXXXXXXXKSLVNSKEAAPTFEQPRMTMEKLLEYGNMIVQEQENVKRVQLADQYLSEAALGETNEDAIQSG 410
            YWAPTREDRIGVC GIFR+DNVA +DIVKLVDTFPGQSIDFFGALRARVYDDEVRKW          K LVNSKE  PTFEQP+MT+EKLLEYGNM+VQEQENVKRVQLAD+YLSEAALG+ N DA+ +G
Sbjct:  304 YWAPTREDRIGVCIGIFRSDNVAKEDIVKLVDTFPGQSIDFFGALRARVYDDEVRKWITGVGVDSIGKKLVNSKEGPPTFEQPKMTIEKLLEYGNMLVQEQENVKRVQLADKYLSEAALGDANSDAMNTG 433          
BLAST of EY710764 vs. ExPASy Swiss-Prot
Match: RCA2_LARTR (Ribulose bisphosphate carboxylase/oxygenase activase 2, chloroplastic OS=Larrea tridentata GN=RCA2 PE=2 SV=1)

HSP 1 Score: 207.608 bits (527), Expect = 9.856e-53
Identity = 98/130 (75.38%), Postives = 112/130 (86.15%), Query Frame = 3
Query:   21 YWAPTREDRIGVCKGIFRNDNVADDDIVKLVDTFPGQSIDFFGALRARVYDDEVRKWXXXXXXXXXXKSLVNSKEAAPTFEQPRMTMEKLLEYGNMIVQEQENVKRVQLADQYLSEAALGETNEDAIQSG 410
            YWAPTREDRIGVCKGIFR DNV ++DIVK+VD FPGQSIDFFGALRARVYDDEVRKW          K LVNSKE  PTFEQP+MT++KLL+YGNM+V+EQENVKRVQLAD+Y+SEAALG+ N+DAI+ G
Sbjct:  304 YWAPTREDRIGVCKGIFRTDNVPEEDIVKVVDQFPGQSIDFFGALRARVYDDEVRKWVSEVGVDTIGKKLVNSKEGPPTFEQPKMTIDKLLQYGNMLVEEQENVKRVQLADKYMSEAALGDANQDAIKRG 433          
BLAST of EY710764 vs. ExPASy Swiss-Prot
Match: RCAB_HORVU (Ribulose bisphosphate carboxylase/oxygenase activase B, chloroplastic OS=Hordeum vulgare GN=RCAB PE=2 SV=1)

HSP 1 Score: 206.838 bits (525), Expect = 1.681e-52
Identity = 98/135 (72.59%), Postives = 115/135 (85.19%), Query Frame = 3
Query:   21 YWAPTREDRIGVCKGIFRNDNVADDDIVKLVDTFPGQSIDFFGALRARVYDDEVRKWXXXXXXXXXXKSLVNSKEAAPTFEQPRMTMEKLLEYGNMIVQEQENVKRVQLADQYLSEAALGETNEDAIQSGGGGGE 425
            YWAPTREDRIGVCKGIFR DNV D+ +V+LVDTFPGQSIDFFGALRARVYDDEVRKW          K LVNS+E  PTF+QP+MT+EKL+EYG+M+VQEQENVKRVQLAD+YLSEAALG+ N+DA+++G   G+
Sbjct:  291 YWAPTREDRIGVCKGIFRTDNVPDEAVVRLVDTFPGQSIDFFGALRARVYDDEVRKWVGEIGVENISKRLVNSREGPPTFDQPKMTIEKLMEYGHMLVQEQENVKRVQLADKYLSEAALGQANDDAMKTGAFYGK 425          
BLAST of EY710764 vs. ExPASy Swiss-Prot
Match: RCA_PHAAU (Ribulose bisphosphate carboxylase/oxygenase activase, chloroplastic OS=Phaseolus aureus GN=RCA PE=2 SV=2)

HSP 1 Score: 206.453 bits (524), Expect = 2.196e-52
Identity = 97/130 (74.62%), Postives = 111/130 (85.38%), Query Frame = 3
Query:   21 YWAPTREDRIGVCKGIFRNDNVADDDIVKLVDTFPGQSIDFFGALRARVYDDEVRKWXXXXXXXXXXKSLVNSKEAAPTFEQPRMTMEKLLEYGNMIVQEQENVKRVQLADQYLSEAALGETNEDAIQSG 410
            YWAPTR+DR+GVCKGIFR D V ++DI KLVDTFPGQSIDFFGALRARVYDDEVRKW          K LVNSKE  PTF+QP+M+++KLL+YGNM+VQEQENVKRVQLAD+YL+EAALG  NEDAI+SG
Sbjct:  306 YWAPTRDDRVGVCKGIFRTDGVPEEDITKLVDTFPGQSIDFFGALRARVYDDEVRKWISGVGVDATGKKLVNSKEGPPTFDQPKMSLDKLLQYGNMLVQEQENVKRVQLADKYLNEAALGNANEDAIKSG 435          
BLAST of EY710764 vs. ExPASy Swiss-Prot
Match: RCAA_HORVU (Ribulose bisphosphate carboxylase/oxygenase activase A, chloroplastic OS=Hordeum vulgare GN=RCAA PE=2 SV=1)

HSP 1 Score: 206.068 bits (523), Expect = 2.868e-52
Identity = 104/168 (61.90%), Postives = 127/168 (75.60%), Query Frame = 3
Query:   21 YWAPTREDRIGVCKGIFRNDNVADDDIVKLVDTFPGQSIDFFGALRARVYDDEVRKWXXXXXXXXXXKSLVNSKEAAPTFEQPRMTMEKLLEYGNMIVQEQENVKRVQLADQYLSEAALGETNEDAIQSG---GGG---GEAPHQMKCSNSRKEVLILLQKNFDPTAR 506
            YWAPTR+DRIGVCKGIF+ DNV+D+ +VK+VDTFPGQSIDFFGALRARVYDDEVRKW          K LVNS++   TFEQP+MT+EKLLEYG+M+VQEQ+NVKRVQLAD Y+S+AALG+ N+DA+++G   G G   G  P    C++          KN+DPTAR
Sbjct:  294 YWAPTRDDRIGVCKGIFQTDNVSDESVVKIVDTFPGQSIDFFGALRARVYDDEVRKWVGSTGIENIGKRLVNSRDGPVTFEQPKMTVEKLLEYGHMLVQEQDNVKRVQLADTYMSQAALGDANQDAMKTGSFYGKGAQQGTLPVPEGCTDQN-------AKNYDPTAR 454          
BLAST of EY710764 vs. ExPASy Swiss-Prot
Match: RCA_SPIOL (Ribulose bisphosphate carboxylase/oxygenase activase, chloroplastic OS=Spinacia oleracea PE=1 SV=2)

HSP 1 Score: 201.83 bits (512), Expect = 5.408e-51
Identity = 103/168 (61.31%), Postives = 119/168 (70.83%), Query Frame = 3
Query:   21 YWAPTREDRIGVCKGIFRNDNVADDDIVKLVDTFPGQSIDFFGALRARVYDDEVRKWXXXXXXXXXXKSLVNSKEAAPTFEQPRMTMEKLLEYGNMIVQEQENVKRVQLADQYLSEAALGETNEDAIQSGGGGGEAPHQMK------CSNSRKEVLILLQKNFDPTAR 506
            YWAPTREDRIGVC GIF+ D V  + +VKLVD FPGQSIDFFGALRARVY DEVRKW          K LVNSK+  P FEQP MT++KL+EYGNM+VQEQENVKRVQLADQY+S AALG+ N+DAI  G   G+A  Q+       C++          KN+DPTAR
Sbjct:  302 YWAPTREDRIGVCTGIFKTDKVPAEHVVKLVDAFPGQSIDFFGALRARVYHDEVRKWVNSVGVDNVGKKLVNSKDGPPVFEQPEMTLQKLMEYGNMLVQEQENVKRVQLADQYMSSAALGDANKDAIDRGTFFGKAAQQVSLPVAQGCTDPE-------AKNYDPTAR 462          
BLAST of EY710764 vs. ExPASy Swiss-Prot
Match: RCA_MAIZE (Ribulose bisphosphate carboxylase/oxygenase activase, chloroplastic OS=Zea mays GN=RCA1 PE=2 SV=3)

HSP 1 Score: 200.675 bits (509), Expect = 1.205e-50
Identity = 95/130 (73.08%), Postives = 111/130 (85.38%), Query Frame = 3
Query:   21 YWAPTREDRIGVCKGIFRNDNVADDDIVKLVDTFPGQSIDFFGALRARVYDDEVRKWXXXXXXXXXXKSLVNSKEAAPTFEQPRMTMEKLLEYGNMIVQEQENVKRVQLADQYLSEAALGETNEDAIQSG 410
            YWAPTREDRIGVCKGIFR D V ++ +V+LVDTFPGQSIDFFGALRARVYDDEVR+W          + LVNSKE  PTFEQP++T+EKLLEYG+M+V EQENVKRVQLAD+YL+EAALGE NEDA+++G
Sbjct:  300 YWAPTREDRIGVCKGIFRTDGVDEEHVVQLVDTFPGQSIDFFGALRARVYDDEVRRWVSETGVENIARKLVNSKEGPPTFEQPKITIEKLLEYGHMLVAEQENVKRVQLADKYLNEAALGEANEDAMKTG 429          
BLAST of EY710764 vs. ExPASy Swiss-Prot
Match: RCA_SOLPN (Ribulose bisphosphate carboxylase/oxygenase activase, chloroplastic OS=Solanum pennellii PE=2 SV=1)

HSP 1 Score: 200.29 bits (508), Expect = 1.574e-50
Identity = 94/130 (72.31%), Postives = 109/130 (83.85%), Query Frame = 3
Query:   21 YWAPTREDRIGVCKGIFRNDNVADDDIVKLVDTFPGQSIDFFGALRARVYDDEVRKWXXXXXXXXXXKSLVNSKEAAPTFEQPRMTMEKLLEYGNMIVQEQENVKRVQLADQYLSEAALGETNEDAIQSG 410
            YWAPTREDRIGVCKGIFR DNV ++ +VK+VD+FPGQSIDFFGALRARVYDDEVRKW          + L+NS++  PTFEQP+MT+EKLLEYGNM+VQEQENVKRVQLA+ YL EAALG+ N DAI +G
Sbjct:  303 YWAPTREDRIGVCKGIFRTDNVPEEAVVKIVDSFPGQSIDFFGALRARVYDDEVRKWVSGTGIELIGEKLLNSRDGPPTFEQPKMTLEKLLEYGNMLVQEQENVKRVQLAETYLKEAALGDANADAINTG 432          
The following BLAST results are available for this feature:
BLAST of EY710764 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 18
Match NameE-valueIdentityDescription
RCA1_LARTR8.063e-5568.10Ribulose bisphosphate carboxylase/oxygenase activa... [more]
RCA_ORYSJ2.346e-5464.81Ribulose bisphosphate carboxylase/oxygenase activa... [more]
RCA_MALDO5.226e-5479.23Ribulose bisphosphate carboxylase/oxygenase activa... [more]
RCA2_LARTR9.856e-5375.38Ribulose bisphosphate carboxylase/oxygenase activa... [more]
RCAB_HORVU1.681e-5272.59Ribulose bisphosphate carboxylase/oxygenase activa... [more]
RCA_PHAAU2.196e-5274.62Ribulose bisphosphate carboxylase/oxygenase activa... [more]
RCAA_HORVU2.868e-5261.90Ribulose bisphosphate carboxylase/oxygenase activa... [more]
RCA_SPIOL5.408e-5161.31Ribulose bisphosphate carboxylase/oxygenase activa... [more]
RCA_MAIZE1.205e-5073.08Ribulose bisphosphate carboxylase/oxygenase activa... [more]
RCA_SOLPN1.574e-5072.31Ribulose bisphosphate carboxylase/oxygenase activa... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C3-701-086-H07-CT.F Sweet orange fruit, development stadium (2 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY710764 ID=EY710764; Name=EY710764; organism=Citrus sinensis; type=EST; length=1051bp
GATGGTCGTATGGAGAATCCTACTGGGCACCTACAAGGGAGGACCGTATT
GGTGTGTGCAAGGGTATCTTCAGGAATGACAATGTGGCTGATGACGACAT
TGTCAAGCTTGTCGACACCTTCCCCGGCCAATCCATTGATTTCTTTGGAG
CCCTGAGGGCCAGAGTCTATGATGATGAGGTGAGGAAGTGGATCTCTGGT
GTTGGTGTTGGAAGCATTGGCAAGAGCCTTGTGAACTCAAAGGAAGCAGC
CCCAACATTCGAGCAACCAAGGATGACAATGGAGAAGCTGCTCGAGTACG
GAAACATGATTGTGCAAGAGCAAGAGAATGTGAAGAGAGTTCAGTTGGCT
GACCAGTATTTGAGTGAGGCCGCTCTGGGTGAAACTAATGAAGATGCTAT
TCAAAGTGGAGGGGGGGGGGGGGAAGCACCCCACCAAATGAAATGTTCCA
ATTCCCGGAAAGAGGTACTGATCCTACTGCAAAAAAACTTTGATCCCACT
GCCAGAAAGTGATAATGGAAGCCTGCCAAAAACACCGCTTTAGGCCCTTG
GTTCCAAAGGGGTTGAAAAATGGTCCCACTTTTGCTTAAGAAGGGGAAAA
AATCCAAAAAAAATATTGGTTGCTATTTTCATTTTTTTTTTTAAATCAAA
AAAAAATCCCTCTTATTTTTGGGGTTCAAAAAAAAAAACAAAAAAAAAGG
GGGGGCCCATCCTAAAAGGATCACAGACCTTTACAAACAGCGGGCGGGGC
GCAACGCCCTAACGCTCCTTTCATAGAGGGCCGCCTAAATTTCCACATTT
CCACGGGCGGGGTTGTTCTTTCAACACACTCCGGGAGTGGGGGAAAAAAC
GCGAATGCTTATACCCCAACATTATAATCAGCTTGTCTGGAGACCCACAA
TCCCCCCCTTTTTTCCACCCAGGACCGGGGGATAGAAATAACAAATAAAA
AAGAGCCCCCCCCCCCCCACATTTACATCCCTATATTCTCCACAGACAAT
ATAAGAATCAACGTACACCAACTCGCCACAAGAATGTGAGTTTGAAGAAA
A
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