EY710683

Overview
NameEY710683
Unique NameEY710683
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length1015
Libraries
Library NameType
Sweet orange fruit, development stadium (2 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
EY710683_ssr940 microsatellite EY710683_ssr940:940..951. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
BLAST of EY710683 vs. ExPASy Swiss-Prot
Match: PDC2_ORYSI (Pyruvate decarboxylase isozyme 2 OS=Oryza sativa subsp. indica GN=PDC2 PE=2 SV=2)

HSP 1 Score: 229.18 bits (583), Expect = 1.141e-60
Identity = 119/171 (69.59%), Postives = 135/171 (78.95%), Query Frame = 2
Query:   98 MDTKIGSLDTCKPPCSDLASPPNGAVSTIQSSV--PATPL----VNPSESTLGRHLARRLVQIGATDVFSVPGDFNLTLLDHLIAEPGLNLIGCCNELNAGYAADGYARSRGGGACVVTFTVGGLSVLKAIAGAYSENLPLNCIVGGPNSNDYGTNRNLHQTIGLPEFNQK 592
            M+T IGS+D         A+  NGAV    S+V  P T      V+  E++LGRHLARRLVQ+G +DVF+VPGDFNLTLLDHLIAEPGL L+GCCNELNAGYAADGYAR+RG GAC VTFTVGGLSVL AIAGAYSENLP+ CI GGPNSNDYGTNR LH TIGLP+F+Q+
Sbjct:    1 METHIGSVDGAA------AAADNGAVGCPASAVGCPMTSARPAPVSAGEASLGRHLARRLVQVGVSDVFAVPGDFNLTLLDHLIAEPGLRLVGCCNELNAGYAADGYARARGVGACAVTFTVGGLSVLNAIAGAYSENLPVICIAGGPNSNDYGTNRILHHTIGLPDFSQE 165          

HSP 2 Score: 26.5646 bits (57), Expect = 1.141e-60
Identity = 24/77 (31.17%), Postives = 40/77 (51.95%), Query Frame = 3
Query:  567 LGCLNLTKKLKCFQTVTWNQGWGGKNWKEAQDFNGNGKINWF*KKSKPGFNNQGVLGNLPGQSPPQILNQKTPVPNF 797
            +G  + +++L+CFQTVT +Q     N ++A +   +  I    ++SKP +    +  NLPG   P     + PVP F
Sbjct:  157 IGLPDFSQELRCFQTVTCHQA-VVTNLEDAHE-QIDTAIATALRESKPVY--LSISCNLPGLPHPTF--SRDPVPFF 227          
BLAST of EY710683 vs. ExPASy Swiss-Prot
Match: PDC2_ORYSJ (Pyruvate decarboxylase isozyme 2 OS=Oryza sativa subsp. japonica GN=PDC2 PE=2 SV=1)

HSP 1 Score: 229.18 bits (583), Expect = 1.141e-60
Identity = 119/171 (69.59%), Postives = 135/171 (78.95%), Query Frame = 2
Query:   98 MDTKIGSLDTCKPPCSDLASPPNGAVSTIQSSV--PATPL----VNPSESTLGRHLARRLVQIGATDVFSVPGDFNLTLLDHLIAEPGLNLIGCCNELNAGYAADGYARSRGGGACVVTFTVGGLSVLKAIAGAYSENLPLNCIVGGPNSNDYGTNRNLHQTIGLPEFNQK 592
            M+T IGS+D         A+  NGAV    S+V  P T      V+  E++LGRHLARRLVQ+G +DVF+VPGDFNLTLLDHLIAEPGL L+GCCNELNAGYAADGYAR+RG GAC VTFTVGGLSVL AIAGAYSENLP+ CI GGPNSNDYGTNR LH TIGLP+F+Q+
Sbjct:    1 METHIGSVDGAA------AAADNGAVGCPASAVGCPMTSARPAPVSAGEASLGRHLARRLVQVGVSDVFAVPGDFNLTLLDHLIAEPGLRLVGCCNELNAGYAADGYARARGVGACAVTFTVGGLSVLNAIAGAYSENLPVICIAGGPNSNDYGTNRILHHTIGLPDFSQE 165          

HSP 2 Score: 26.5646 bits (57), Expect = 1.141e-60
Identity = 24/77 (31.17%), Postives = 40/77 (51.95%), Query Frame = 3
Query:  567 LGCLNLTKKLKCFQTVTWNQGWGGKNWKEAQDFNGNGKINWF*KKSKPGFNNQGVLGNLPGQSPPQILNQKTPVPNF 797
            +G  + +++L+CFQTVT +Q     N ++A +   +  I    ++SKP +    +  NLPG   P     + PVP F
Sbjct:  157 IGLPDFSQELRCFQTVTCHQA-VVTNLEDAHE-QIDTAIATALRESKPVY--LSISCNLPGLPHPTF--SRDPVPFF 227          
BLAST of EY710683 vs. ExPASy Swiss-Prot
Match: PDC1_ORYSJ (Pyruvate decarboxylase isozyme 1 OS=Oryza sativa subsp. japonica GN=PDC1 PE=2 SV=1)

HSP 1 Score: 230.335 bits (586), Expect = 1.487e-60
Identity = 116/154 (75.32%), Postives = 132/154 (85.71%), Query Frame = 2
Query:  131 KPPCSDLASPPNGAVSTIQSSVPATPLVNPSESTLGRHLARRLVQIGATDVFSVPGDFNLTLLDHLIAEPGLNLIGCCNELNAGYAADGYARSRGGGACVVTFTVGGLSVLKAIAGAYSENLPLNCIVGGPNSNDYGTNRNLHQTIGLPEFNQK 592
            KP C+ + S P   VS+  ++V   P+ + + +TLGRHLARRLVQIGATDVF+VPGDFNLTLLD+LIAEPGL LIGCCNELNAGYAADGYAR+RG GAC VTFTVGGLSVL AIAGAYSENLP+ CIVGGPNSNDYGTNR LH TIGLP+F+Q+
Sbjct:   15 KPSCNSVGSLP--VVSS--NAVINPPVTSAAGATLGRHLARRLVQIGATDVFAVPGDFNLTLLDYLIAEPGLKLIGCCNELNAGYAADGYARARGVGACAVTFTVGGLSVLNAIAGAYSENLPVICIVGGPNSNDYGTNRILHHTIGLPDFSQE 164          

HSP 2 Score: 25.0238 bits (53), Expect = 1.487e-60
Identity = 24/77 (31.17%), Postives = 39/77 (50.65%), Query Frame = 3
Query:  567 LGCLNLTKKLKCFQTVTWNQGWGGKNWKEAQDFNGNGKINWF*KKSKPGFNNQGVLGNLPGQSPPQILNQKTPVPNF 797
            +G  + +++L+CFQT+T  Q     N  +A +   +  I    ++SKP + + G   NL G S P     + PVP F
Sbjct:  156 IGLPDFSQELRCFQTITCYQA-VINNLDDAHE-QIDTAIATALRESKPVYISVGC--NLAGLSHPTF--SREPVPLF 226          
BLAST of EY710683 vs. ExPASy Swiss-Prot
Match: PDC1_ORYSI (Pyruvate decarboxylase isozyme 1 OS=Oryza sativa subsp. indica GN=PDC1 PE=2 SV=1)

HSP 1 Score: 230.335 bits (586), Expect = 1.487e-60
Identity = 116/154 (75.32%), Postives = 132/154 (85.71%), Query Frame = 2
Query:  131 KPPCSDLASPPNGAVSTIQSSVPATPLVNPSESTLGRHLARRLVQIGATDVFSVPGDFNLTLLDHLIAEPGLNLIGCCNELNAGYAADGYARSRGGGACVVTFTVGGLSVLKAIAGAYSENLPLNCIVGGPNSNDYGTNRNLHQTIGLPEFNQK 592
            KP C+ + S P   VS+  ++V   P+ + + +TLGRHLARRLVQIGATDVF+VPGDFNLTLLD+LIAEPGL LIGCCNELNAGYAADGYAR+RG GAC VTFTVGGLSVL AIAGAYSENLP+ CIVGGPNSNDYGTNR LH TIGLP+F+Q+
Sbjct:   15 KPSCNSVGSLP--VVSS--NAVIHPPVTSAAGATLGRHLARRLVQIGATDVFAVPGDFNLTLLDYLIAEPGLKLIGCCNELNAGYAADGYARARGVGACAVTFTVGGLSVLNAIAGAYSENLPVICIVGGPNSNDYGTNRILHHTIGLPDFSQE 164          

HSP 2 Score: 25.0238 bits (53), Expect = 1.487e-60
Identity = 24/77 (31.17%), Postives = 39/77 (50.65%), Query Frame = 3
Query:  567 LGCLNLTKKLKCFQTVTWNQGWGGKNWKEAQDFNGNGKINWF*KKSKPGFNNQGVLGNLPGQSPPQILNQKTPVPNF 797
            +G  + +++L+CFQT+T  Q     N  +A +   +  I    ++SKP + + G   NL G S P     + PVP F
Sbjct:  156 IGLPDFSQELRCFQTITCYQA-VINNLDDAHE-QIDTAIATALRESKPVYISVGC--NLAGLSHPTF--SREPVPLF 226          
BLAST of EY710683 vs. ExPASy Swiss-Prot
Match: PDC1_MAIZE (Pyruvate decarboxylase isozyme 1 OS=Zea mays GN=PDC1 PE=2 SV=1)

HSP 1 Score: 229.95 bits (585), Expect = 4.298e-60
Identity = 114/155 (73.55%), Postives = 130/155 (83.87%), Query Frame = 2
Query:  131 KPPCSDL-ASPPNGAVSTIQSSVPATPLVNPSESTLGRHLARRLVQIGATDVFSVPGDFNLTLLDHLIAEPGLNLIGCCNELNAGYAADGYARSRGGGACVVTFTVGGLSVLKAIAGAYSENLPLNCIVGGPNSNDYGTNRNLHQTIGLPEFNQK 592
            KP C+ + A P   + + I +   A   + P+ +TLGRHLARRLVQIGA+DVF+VPGDFNLTLLD+LIAEPGL L+GCCNELNAGYAADGYARSRG GAC VTFTVGGLSVL AIAGAYSENLP+ CIVGGPNSNDYGTNR LH TIGLP+F+Q+
Sbjct:   15 KPTCNGVGALPVANSHAIIATPAAAAATLAPAGATLGRHLARRLVQIGASDVFAVPGDFNLTLLDYLIAEPGLTLVGCCNELNAGYAADGYARSRGVGACAVTFTVGGLSVLNAIAGAYSENLPVVCIVGGPNSNDYGTNRILHHTIGLPDFSQE 169          

HSP 2 Score: 23.8682 bits (50), Expect = 4.298e-60
Identity = 24/77 (31.17%), Postives = 39/77 (50.65%), Query Frame = 3
Query:  567 LGCLNLTKKLKCFQTVTWNQGWGGKNWKEAQDFNGNGKINWF*KKSKPGFNNQGVLGNLPGQSPPQILNQKTPVPNF 797
            +G  + +++L+CFQT+T  Q     N  +A +   +  I    ++SKP + +  V  NL G S P     + PVP F
Sbjct:  161 IGLPDFSQELRCFQTITCYQAI-INNLDDAHE-QIDTAIATALRESKPVYIS--VSCNLAGLSHPTF--SRDPVPMF 231          
BLAST of EY710683 vs. ExPASy Swiss-Prot
Match: PDC1_PEA (Pyruvate decarboxylase isozyme 1 OS=Pisum sativum GN=PDC1 PE=2 SV=1)

HSP 1 Score: 225.713 bits (574), Expect = 3.331e-58
Identity = 111/147 (75.51%), Postives = 124/147 (84.35%), Query Frame = 2
Query:  161 PNGAVSTIQSSVPATPLVNPS-ESTLGRHLARRLVQIGATDVFSVPGDFNLTLLDHLIAEPGLNLIGCCNELNAGYAADGYARSRGGGACVVTFTVGGLSVLKAIAGAYSENLPLNCIVGGPNSNDYGTNRNLHQTIGLPEFNQKTQ 598
            PNG+     S+  A PL   S + T+GRHLARRLV+IG  DVFSVPGDFNLTLLDHLIAEP LNL+GCCNELNAGYAADGY R++G GACVVTFTVGGLS+L AIAGAYSENLP+ CIVGGPNSNDYGTNR LH TIGLP+F+Q+ Q
Sbjct:    8 PNGSTPCPTSAPSAIPLRPSSCDGTMGRHLARRLVEIGVRDVFSVPGDFNLTLLDHLIAEPELNLVGCCNELNAGYAADGYGRAKGVGACVVTFTVGGLSILNAIAGAYSENLPVICIVGGPNSNDYGTNRILHHTIGLPDFSQELQ 154          
BLAST of EY710683 vs. ExPASy Swiss-Prot
Match: PDC2_TOBAC (Pyruvate decarboxylase isozyme 2 OS=Nicotiana tabacum GN=PDC2 PE=2 SV=1)

HSP 1 Score: 219.935 bits (559), Expect = 1.129e-57
Identity = 109/139 (78.42%), Postives = 122/139 (87.77%), Query Frame = 2
Query:  176 STIQSSVPATPLVNPSESTLGRHLARRLVQIGATDVFSVPGDFNLTLLDHLIAEPGLNLIGCCNELNAGYAADGYARSRGGGACVVTFTVGGLSVLKAIAGAYSENLPLNCIVGGPNSNDYGTNRNLHQTIGLPEFNQK 592
            S IQ S  ++ + N +++TLGRHLARRLV+IG  DVFSVPGDFNLTLLDHLIAEP L  IGCCNELNAGYAADGYAR+RG GACVVTFTVGGLSVL AIAGAYSENLP+ CIVGGPN+NDYGTNR LH TIGLP+F+Q+
Sbjct:   10 SCIQDSQSSSVIAN-TDATLGRHLARRLVEIGIQDVFSVPGDFNLTLLDHLIAEPRLKNIGCCNELNAGYAADGYARARGVGACVVTFTVGGLSVLNAIAGAYSENLPVICIVGGPNTNDYGTNRILHHTIGLPDFSQE 147          

HSP 2 Score: 25.7942 bits (55), Expect = 1.129e-57
Identity = 26/81 (32.10%), Postives = 42/81 (51.85%), Query Frame = 3
Query:  567 LGCLNLTKKLKCFQTVTWNQGWGGKNWKEAQDFNGNGKINWF*KKSKPGFNNQGVLGNLPGQSPPQILNQKTPVPNFSLFP 809
            +G  + +++L+CFQTVT  Q     N  +A +   +  I+   K+SKP + +  +  NLP    P     + P+P FSL P
Sbjct:  139 IGLPDFSQELRCFQTVTCYQA-VVNNLDDAHE-QIDRAISTALKESKPVYIS--ISCNLPAIPHPTF--SRDPIP-FSLSP 212          
BLAST of EY710683 vs. ExPASy Swiss-Prot
Match: PDC3_ORYSJ (Pyruvate decarboxylase isozyme 3 OS=Oryza sativa subsp. japonica GN=PDC3 PE=2 SV=1)

HSP 1 Score: 218.009 bits (554), Expect = 6.945e-56
Identity = 103/131 (78.63%), Postives = 116/131 (88.55%), Query Frame = 2
Query:  200 ATPLVNPSESTLGRHLARRLVQIGATDVFSVPGDFNLTLLDHLIAEPGLNLIGCCNELNAGYAADGYARSRGGGACVVTFTVGGLSVLKAIAGAYSENLPLNCIVGGPNSNDYGTNRNLHQTIGLPEFNQK 592
            A  + +  ++TLG HLARRLVQ+G +DVF+VPGDFNLTLLDHLIAEPGL ++GCCNELNAGYAADGYAR+RG GAC VTFTVGGLSVL AI GAYSENLPL CIVGGPNSNDYGTNR LH TIGLP+F+Q+
Sbjct:   15 AVVVPSSGDATLGGHLARRLVQVGVSDVFAVPGDFNLTLLDHLIAEPGLRVVGCCNELNAGYAADGYARARGVGACAVTFTVGGLSVLNAIGGAYSENLPLICIVGGPNSNDYGTNRILHHTIGLPDFSQE 145          
BLAST of EY710683 vs. ExPASy Swiss-Prot
Match: PDC3_ORYSI (Pyruvate decarboxylase isozyme 3 OS=Oryza sativa subsp. indica GN=PDC3 PE=2 SV=2)

HSP 1 Score: 218.009 bits (554), Expect = 6.945e-56
Identity = 103/131 (78.63%), Postives = 116/131 (88.55%), Query Frame = 2
Query:  200 ATPLVNPSESTLGRHLARRLVQIGATDVFSVPGDFNLTLLDHLIAEPGLNLIGCCNELNAGYAADGYARSRGGGACVVTFTVGGLSVLKAIAGAYSENLPLNCIVGGPNSNDYGTNRNLHQTIGLPEFNQK 592
            A  + +  ++TLG HLARRLVQ+G +DVF+VPGDFNLTLLDHLIAEPGL ++GCCNELNAGYAADGYAR+RG GAC VTFTVGGLSVL AI GAYSENLPL CIVGGPNSNDYGTNR LH TIGLP+F+Q+
Sbjct:   15 AVVVPSSGDATLGGHLARRLVQVGVSDVFAVPGDFNLTLLDHLIAEPGLRVVGCCNELNAGYAADGYARARGVGACAVTFTVGGLSVLNAIGGAYSENLPLICIVGGPNSNDYGTNRILHHTIGLPDFSQE 145          
BLAST of EY710683 vs. ExPASy Swiss-Prot
Match: PDC_ZYMMO (Pyruvate decarboxylase OS=Zymomonas mobilis GN=pdc PE=1 SV=1)

HSP 1 Score: 132.88 bits (333), Expect = 2.938e-30
Identity = 61/127 (48.03%), Postives = 86/127 (67.72%), Query Frame = 2
Query:  230 TLGRHLARRLVQIGATDVFSVPGDFNLTLLDHLIAEPGLNLIGCCNELNAGYAADGYARSRGGGACVVTFTVGGLSVLKAIAGAYSENLPLNCIVGGPNSNDYGTNRNLHQTIGLPEFNQKTQMLSN 610
            T+G +LA RLVQIG    F+V GD+NL LLD+L+    +  + CCNELN G++A+GYAR++G  A VVT++VG LS   AI GAY+ENLP+  I G PN+ND+     LH  +G  +++ + +M  N
Sbjct:    4 TVGTYLAERLVQIGLKHHFAVAGDYNLVLLDNLLLNKNMEQVYCCNELNCGFSAEGYARAKGAAAAVVTYSVGALSAFDAIGGAYAENLPVILISGAPNNNDHAAGHVLHHALGKTDYHYQLEMAKN 130          
The following BLAST results are available for this feature:
BLAST of EY710683 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 40
Match NameE-valueIdentityDescription
PDC2_ORYSI1.141e-6069.59Pyruvate decarboxylase isozyme 2 OS=Oryza sativa s... [more]
PDC2_ORYSJ1.141e-6069.59Pyruvate decarboxylase isozyme 2 OS=Oryza sativa s... [more]
PDC1_ORYSJ1.487e-6075.32Pyruvate decarboxylase isozyme 1 OS=Oryza sativa s... [more]
PDC1_ORYSI1.487e-6075.32Pyruvate decarboxylase isozyme 1 OS=Oryza sativa s... [more]
PDC1_MAIZE4.298e-6073.55Pyruvate decarboxylase isozyme 1 OS=Zea mays GN=PD... [more]
PDC1_PEA3.331e-5875.51Pyruvate decarboxylase isozyme 1 OS=Pisum sativum ... [more]
PDC2_TOBAC1.129e-5778.42Pyruvate decarboxylase isozyme 2 OS=Nicotiana taba... [more]
PDC3_ORYSJ6.945e-5678.63Pyruvate decarboxylase isozyme 3 OS=Oryza sativa s... [more]
PDC3_ORYSI6.945e-5678.63Pyruvate decarboxylase isozyme 3 OS=Oryza sativa s... [more]
PDC_ZYMMO2.938e-3048.03Pyruvate decarboxylase OS=Zymomonas mobilis GN=pdc... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C3-701-086-A07-CT.F Sweet orange fruit, development stadium (2 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY710683 ID=EY710683; Name=EY710683; organism=Citrus sinensis; type=EST; length=1015bp
CTAGAAGTTCAAAAAAAAAAAAAACATTTCTGAAAGACACTTTTCGGAAA
CGCATTAACAAACAGACAATTCTTCGTCTCCGGCCCTTCAATCAATCATG
GACACTAAAATTGGATCACTCGACACCTGCAAGCCCCCATGCAGCGACTT
AGCCAGCCCGCCAAACGGTGCCGTTTCAACAATCCAATCCTCCGTTCCCG
CTACTCCACTCGTCAACCCGTCCGAGTCGACCCTCGGCCGCCACCTCGCT
CGCCGGCTCGTCCAAATCGGCGCCACCGACGTCTTCTCGGTCCCCGGCGA
CTTCAACTTGACGCTTCTCGACCACCTGATAGCCGAGCCCGGGCTCAACT
TGATCGGTTGCTGTAACGAGCTGAATGCCGGATACGCTGCCGATGGGTAC
GCTCGCTCGCGTGGGGGCGGCGCCTGTGTCGTGACCTTCACCGTTGGGGG
GCTTAGCGTGCTTAAAGCTATCGCCGGTGCTTACAGTGAAAATCTGCCGT
TGAATTGCATCGTTGGTGGCCCAAACTCCAATGATTACGGAACCAACAGG
AACCTTCATCAAACCATTGGGTTGCCTGAATTTAACCAAAAAACTCAAAT
GCTTTCAAACGGTCACCTGGAATCAGGGTTGGGGGGGAAAAAATTGGAAG
GAAGCACAGGATTTTAATGGAAACGGGAAAATAAACTGGTTTTGAAAAAA
AAGCAAGCCCGGGTTTAATAATCAGGGGGTGCTGGGAAATTTGCCCGGGC
AATCCCCACCCCAAATTTTAAACCAGAAAACCCCCGTTCCCAATTTTTCC
CTTTTCCCCCCCAATTTAAAAAAAAAAAAAGGGGGGTTGGGAGGGGCGGG
ATTTGAAAAGGGCACCAAAAAAAAATTTTTTTAGAAAAAGGGGGGGGGGA
AAAAACCGGAGGGGTGGGTGGTGGGGGGGGGCCCCACAAAAAGAAAGAAA
GGGGGCTACAAAGAGGCTTGTGGACAAAACATCTTTTTTATTTATTATGA
AAAATATTTTGGGTC
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