EY710642

Overview
NameEY710642
Unique NameEY710642
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length1037
Libraries
Library NameType
Sweet orange fruit, development stadium (2 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY710642 vs. ExPASy Swiss-Prot
Match: CB26_ARATH (Chlorophyll a-b binding protein CP26, chloroplastic OS=Arabidopsis thaliana GN=LHCB5 PE=2 SV=1)

HSP 1 Score: 257.299 bits (656), Expect = 1.066e-67
Identity = 124/136 (91.18%), Postives = 130/136 (95.59%), Query Frame = 2
Query:    2 AVWFKTGALLLDGNTLNYFGKNIPINLVFAVIAEIVLVGGAEYYRITNGLDLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANNLLTVISGNVERAPTL 409
            AVWFKTGALLLDGNTLNYFGKNIPINLV AV+AE+VL+GGAEYYRITNGLD EDKLHPGGPFDPLGLAKDP+Q ALLKVKEIKNGRLAMFAMLGFF+QAYVTGEGPVENLAKHLSDPF NNLLTVI+G  ERAPTL
Sbjct:  145 AVWFKTGALLLDGNTLNYFGKNIPINLVLAVVAEVVLLGGAEYYRITNGLDFEDKLHPGGPFDPLGLAKDPEQGALLKVKEIKNGRLAMFAMLGFFIQAYVTGEGPVENLAKHLSDPFGNNLLTVIAGTAERAPTL 280          
BLAST of EY710642 vs. ExPASy Swiss-Prot
Match: CB2_DUNTE (Chlorophyll a-b binding protein of LHCII type I, chloroplastic OS=Dunaliella tertiolecta PE=2 SV=1)

HSP 1 Score: 136.346 bits (342), Expect = 2.742e-31
Identity = 72/126 (57.14%), Postives = 86/126 (68.25%), Query Frame = 2
Query:    5 VWFKTGALLLDGNTLNYFGKNIPIN---LVFAVIAEIVLVGGAEYYRITNG----LDLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFAN 361
            VWFK GA +     LNY G    I+   ++  +  ++VL+G AE YR   G    LD  D L+PGGPFDPLGLA DPD FA LKVKEIKNGRLAMF+ LGFF+QA VTG+GPV+NL  HL+DP  N
Sbjct:  115 VWFKAGAQIFADGGLNYLGNESLIHAQSIIATLAVQVVLMGLAEAYRANGGSEGFLDDLDTLYPGGPFDPLGLADDPDTFAELKVKEIKNGRLAMFSCLGFFVQAIVTGKGPVQNLTDHLADPTVN 240          
BLAST of EY710642 vs. ExPASy Swiss-Prot
Match: CB2_PHYPA (Chlorophyll a-b binding protein, chloroplastic OS=Physcomitrella patens PE=3 SV=1)

HSP 1 Score: 134.42 bits (337), Expect = 1.042e-30
Identity = 70/126 (55.56%), Postives = 89/126 (70.63%), Query Frame = 2
Query:    2 AVWFKTGALLLDGNTLNYFGKNIPINL--VFAVIA-EIVLVGGAEYYRITNGL--DLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANN 364
            AVWFK GA +     L+Y G    ++   + A+ A ++VL+G  E YR+  G   ++ D ++PGG FDPLGLA DPD FA LKVKEIKNGRLAMF+M GFF+QA VTG+GP+ENL  HL+DP ANN
Sbjct:  131 AVWFKAGAQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRVAGGPLGEVTDPIYPGGSFDPLGLADDPDTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLNDHLADPVANN 256          
BLAST of EY710642 vs. ExPASy Swiss-Prot
Match: CB2B_PINSY (Chlorophyll a-b binding protein type 2 member 1B, chloroplastic OS=Pinus sylvestris PE=2 SV=1)

HSP 1 Score: 134.42 bits (337), Expect = 1.042e-30
Identity = 69/126 (54.76%), Postives = 90/126 (71.43%), Query Frame = 2
Query:    2 AVWFKTGALLLDGNTLNYFGKNIPINL--VFAVIA-EIVLVGGAEYYRITNGL--DLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANN 364
            AVWFK GA +     L+Y G    ++   + A+ A +++L+G  E YRI  G   ++ D ++PGG FDPLGLA+DP+ FA LKVKEIKNGRLAMF+M GFF+QA VTG+GP+ENLA HL+DP  NN
Sbjct:  137 AVWFKAGAQIFSEGGLDYLGNPSLVHAQSILAIWACQVILMGAVEGYRIAGGPLGEVTDPIYPGGSFDPLGLAEDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPIENLADHLADPVNNN 262          
BLAST of EY710642 vs. ExPASy Swiss-Prot
Match: CB2A_PINSY (Chlorophyll a-b binding protein type 2 member 1A, chloroplastic OS=Pinus sylvestris PE=2 SV=1)

HSP 1 Score: 134.42 bits (337), Expect = 1.042e-30
Identity = 70/126 (55.56%), Postives = 88/126 (69.84%), Query Frame = 2
Query:    2 AVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA-EIVLVGGAEYYRITNGL--DLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANN 364
            AVWFK GA +     L+Y G    I    + A+ A +++L+G  E YR+  G   ++ D ++PGG FDPLGLA DPD FA LKVKEIKNGRLAMF+M GFF+QA VTG+GP+ENLA HL+DP  NN
Sbjct:  141 AVWFKAGAQIFSEGGLDYLGSPQLIHAQSILAIWACQVILMGAIEGYRVAGGPLGEVTDPIYPGGNFDPLGLADDPDAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPIENLADHLADPVNNN 266          
BLAST of EY710642 vs. ExPASy Swiss-Prot
Match: CB2_DUNSA (Chlorophyll a-b binding protein of LHCII type I, chloroplastic OS=Dunaliella salina PE=2 SV=1)

HSP 1 Score: 133.65 bits (335), Expect = 1.777e-30
Identity = 71/126 (56.35%), Postives = 85/126 (67.46%), Query Frame = 2
Query:    2 AVWFKTGALLLDGNTLNYFGKNIPI---NLVFAVIAEIVLVGGAEYYRITNGLDLE--DKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANN 364
            A+WFK GA +     LNY G    I   N+V  +  ++VL+G  E YR+  G   E  D L+PG  FDPLGLA DPD FA LKVKEIKNGRLAMFA LGFF+QA VTG+GP+ENL  HL++P  NN
Sbjct:  137 AIWFKAGAAIFQDGGLNYLGNPSLIHAQNIVATLAVQVVLMGLVEGYRVNGGPAGEGLDPLYPGEAFDPLGLADDPDTFAELKVKEIKNGRLAMFACLGFFVQAIVTGKGPIENLTDHLANPAENN 262          
BLAST of EY710642 vs. ExPASy Swiss-Prot
Match: CB23_PETSP (Chlorophyll a-b binding protein 22R, chloroplastic OS=Petunia sp. GN=CAB22R PE=3 SV=1)

HSP 1 Score: 133.65 bits (335), Expect = 1.777e-30
Identity = 70/126 (55.56%), Postives = 90/126 (71.43%), Query Frame = 2
Query:    2 AVWFKTGALLLDGNTLNYFGKNIPINL--VFAVIA-EIVLVGGAEYYRITNGL--DLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANN 364
            AVWFK GA +     L+Y G    ++   + A+ A ++VL+G  E YR+  G   ++ D L+PGG FDPLGLA+DP+ FA LKVKEIKNGRLAMF+M GFF+QA VTG+GP+ENLA HL+DP  NN
Sbjct:  130 AVWFKAGAQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRVAGGPLGEVIDPLYPGGSFDPLGLAEDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNN 255          
BLAST of EY710642 vs. ExPASy Swiss-Prot
Match: CB2B_SOLLC (Chlorophyll a-b binding protein 1B, chloroplastic OS=Solanum lycopersicum GN=CAB1B PE=3 SV=1)

HSP 1 Score: 133.265 bits (334), Expect = 2.321e-30
Identity = 70/126 (55.56%), Postives = 90/126 (71.43%), Query Frame = 2
Query:    2 AVWFKTGALLLDGNTLNYFGKNIPINL--VFAVIA-EIVLVGGAEYYRITNGL--DLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANN 364
            AVWFK G+ +     L+Y G    ++   + A+ A ++VL+G  E YRI  G   ++ D L+PGG FDPLGLA+DP+ FA LKVKEIKNGRLAMF+M GFF+QA VTG+GP+ENLA HL+DP  NN
Sbjct:  128 AVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVVDPLYPGGSFDPLGLAEDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNN 253          
BLAST of EY710642 vs. ExPASy Swiss-Prot
Match: CB2A_PYRPY (Chlorophyll a-b binding protein 1A, chloroplastic OS=Pyrus pyrifolia PE=2 SV=1)

HSP 1 Score: 132.88 bits (333), Expect = 3.032e-30
Identity = 69/126 (54.76%), Postives = 88/126 (69.84%), Query Frame = 2
Query:    2 AVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA-EIVLVGGAEYYRITNGL--DLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANN 364
            AVWFK GA +     L+Y G    I    + A+ A +++L+G  E YR+  G   ++ D ++PGG FDPLGLA DPD FA +KVKEIKNGRLAMF+M GFF+QA VTG+GP+ENLA HL+DP  NN
Sbjct:  141 AVWFKAGAQIFSEGGLDYLGSPQLIHAQSILAIWACQVILMGAIEGYRVAGGPLGEVTDPIYPGGNFDPLGLADDPDAFADVKVKEIKNGRLAMFSMFGFFVQAIVTGKGPIENLADHLADPVNNN 266          
BLAST of EY710642 vs. ExPASy Swiss-Prot
Match: CB24_TOBAC (Chlorophyll a-b binding protein 40, chloroplastic OS=Nicotiana tabacum GN=CAB40 PE=2 SV=1)

HSP 1 Score: 132.88 bits (333), Expect = 3.032e-30
Identity = 69/126 (54.76%), Postives = 90/126 (71.43%), Query Frame = 2
Query:    2 AVWFKTGALLLDGNTLNYFGKNIPINL--VFAVIA-EIVLVGGAEYYRITNGL--DLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANN 364
            AVWFK G+ +     L+Y G    ++   + A+ A ++VL+G  E YR+  G   ++ D L+PGG FDPLGLA+DP+ FA LKVKEIKNGRLAMF+M GFF+QA VTG+GP+ENLA HL+DP  NN
Sbjct:  130 AVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRVAGGPLGEVVDPLYPGGSFDPLGLAEDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNN 255          
The following BLAST results are available for this feature:
BLAST of EY710642 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 76
Match NameE-valueIdentityDescription
CB26_ARATH1.066e-6791.18Chlorophyll a-b binding protein CP26, chloroplasti... [more]
CB2_DUNTE2.742e-3157.14Chlorophyll a-b binding protein of LHCII type I, c... [more]
CB2_PHYPA1.042e-3055.56Chlorophyll a-b binding protein, chloroplastic OS=... [more]
CB2B_PINSY1.042e-3054.76Chlorophyll a-b binding protein type 2 member 1B, ... [more]
CB2A_PINSY1.042e-3055.56Chlorophyll a-b binding protein type 2 member 1A, ... [more]
CB2_DUNSA1.777e-3056.35Chlorophyll a-b binding protein of LHCII type I, c... [more]
CB23_PETSP1.777e-3055.56Chlorophyll a-b binding protein 22R, chloroplastic... [more]
CB2B_SOLLC2.321e-3055.56Chlorophyll a-b binding protein 1B, chloroplastic ... [more]
CB2A_PYRPY3.032e-3054.76Chlorophyll a-b binding protein 1A, chloroplastic ... [more]
CB24_TOBAC3.032e-3054.76Chlorophyll a-b binding protein 40, chloroplastic ... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C3-701-083-E08-CT.F Sweet orange fruit, development stadium (2 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY710642 ID=EY710642; Name=EY710642; organism=Citrus sinensis; type=EST; length=1037bp
AGCTGTCTGGTTCAAGACTGGAGCTCTACTTCTTGATGGAAACACATTGA
ACTACTTCGGAAAGAACATCCCAATCAACCTTGTTTTTGCTGTCATTGCT
GAGATTGTTCTTGTAGGTGGTGCTGAATATTATAGAATCACCAACGGTTT
GGATTTGGAGGACAAGCTTCACCCAGGTGGTCCATTTGACCCACTGGGAT
TAGCAAAGGATCCTGACCAATTTGCATTGCTAAAAGTGAAGGAGATCAAG
AATGGAAGACTTGCAATGTTTGCCATGCTTGGTTTCTTTCTCCAAGCTTA
TGTCACAGGTGAAGGTCCAGTTGAGAACCTTGCTAAACATCTCAGTGATC
CTTTTGCCAACAACTTGCTTACCGTGATCTCCGGAAACGTAGAGAGAGCT
CCCACCCTGTGATTTCAGTTGTTCTGATGTTCTTTTCACTCGAATCTAAA
ATGCATTGTACATCTCATCATCAAGACATTTCCAAAATGTTGAAACCCTT
TAAAATGATCATGGGCACTCGAATCCCCTACTCTCTGAGTTTTAGAAGCT
TTGATGGTTAATTCCCCTATAACCCTCTTCCAGAATAATCATTTAAAGCT
AAAATTTGAAACCTTGGTTCTTAATGGATGGAAAAAAACGTAAAAAGGGG
GTTTAAACCAAAGCTTGGTTTGGTGGGTCAAATGTATCCAGAACTCCCCC
ACCTACATTAAGCAAAAGAAAGGGGGAGTCAAAGTAACCATTACTTTCGA
AAACATAAAACAAGTAAAAGCAGCCCGCCCCATATCAGAATGCAAACAAT
AAGAGATCGGCCATGGGAACAAAAAAGCTAAAGAAACTCTAGTTATAGGA
AGCCGGGGAAAGAATATCTGAAAATGTGCAACAAGCAAGAAATGGAGAAA
AAAGAAAGAGAAAGGACAAAAATAAAAAAAATGACGAGACTGGCGAAACC
AAAGGAACAAAACAAACACAAAATAAACATACCTCCGCAANGGAACAACA
TAACAACATAATACGGGCAAAGAAAAAGACGAAGAAA
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