EY710634

Overview
NameEY710634
Unique NameEY710634
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length1053
Libraries
Library NameType
Sweet orange fruit, development stadium (2 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
EY710634_ssr384 microsatellite EY710634_ssr384:384..395. BLAST: Citrus ESTs to Prunus persica proteins V1
EY710634_ssr396 microsatellite EY710634_ssr396:396..407. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
[Close]
BLAST of EY710634 vs. ExPASy Swiss-Prot
Match: CB4B_SOLLC (Chlorophyll a-b binding protein CP24 10B, chloroplastic OS=Solanum lycopersicum GN=CAP10B PE=3 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 2.384e-14
Identity = 43/74 (58.11%), Postives = 50/74 (67.57%), Query Frame = 2 
Query:   47 MAAATSGAVLNGLGSSFINGGKKSQALLAG--TNRVTXXXXXXXXXX-LPPKKSWIPAVKGGGNLINPEWLDGS 259
            M   ++ AVLNGL SSF+ GGKK+QALL    T RVT           + PKKSWIPAVK GGNL++PEWLDGS
Sbjct:    1 MTTTSATAVLNGLSSSFLTGGKKTQALLGAHVTARVTTPKRFVVAAAAVAPKKSWIPAVKSGGNLVDPEWLDGS 74
[Close]
BLAST of EY710634 vs. ExPASy Swiss-Prot
Match: CB4A_SOLLC (Chlorophyll a-b binding protein CP24 10A, chloroplastic OS=Solanum lycopersicum GN=CAP10A PE=3 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 9.057e-14
Identity = 44/73 (60.27%), Postives = 48/73 (65.75%), Query Frame = 2 
Query:   53 AATSGAVLNGLGSSFINGGKKSQALLAG--TNRVTXXXXXXXXXXLPP--KKSWIPAVKGGGNLINPEWLDGS 259
            A TS AVLNGL SSF+ GG KSQALLA     RV           L    KKSWIPAV+GGGNL++PEWLDGS
Sbjct:    2 ATTSAAVLNGLSSSFLTGGNKSQALLAAPLAARVGGAATPKRFTVLAAAAKKSWIPAVRGGGNLVDPEWLDGS 74
[Close]
BLAST of EY710634 vs. ExPASy Swiss-Prot
Match: CB4_SPIOL (Chlorophyll a-b binding protein CP24, chloroplastic OS=Spinacia oleracea PE=2 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 4.970e-12
Identity = 42/79 (53.16%), Postives = 51/79 (64.56%), Query Frame = 2 
Query:   47 MAAATSG-AVLNGLGSSFINGGKKS-QALLAGTNRV------TXXXXXXXXXXLPPKKSWIPAVKGGGNLINPEWLDGS 259
            MAAATS  A++NG  S F++GGKKS Q+LL   ++V      T            PKKSWIPAVKGGGN ++PEWLDGS
Sbjct:    1 MAAATSATAIVNGFTSPFLSGGKKSSQSLLFVNSKVGAGVSTTSRKLVVVAAAAAPKKSWIPAVKGGGNFLDPEWLDGS 79
The following BLAST results are available for this feature:
BLAST of EY710634 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 3
Match NameE-valueIdentityDescription
CB4B_SOLLC2.384e-1458.11Chlorophyll a-b binding protein CP24 10B, chloropl... [more]
CB4A_SOLLC9.057e-1460.27Chlorophyll a-b binding protein CP24 10A, chloropl... [more]
CB4_SPIOL4.970e-1253.16Chlorophyll a-b binding protein CP24, chloroplasti... [more]
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Properties
Property NameValue
Genbank descriptionCS00-C3-701-083-D12-CT.F Sweet orange fruit, development stadium (2 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY710634 ID=EY710634; Name=EY710634; organism=Citrus sinensis; type=EST; length=1053bp
TGACAGCCCATTCTGCAGCTACACAAGTCAAGTAGAGATCATATCTATGG
CGGCTGCAACATCCGGGGCTGTGTTAAACGGATTGGGTTCTTCATTCATA
AATGGTGGCAAGAAGAGCCAGGCTCTTTTGGCTGGCACGAATAGAGTGAC
AAGTTCTAAAAAGTCAGTTGTTGTAGCTGCTCTTCCACCTAAAAAATCTT
GGATTCCTGCTGTTAAAGGTGGTGGCAACCTCATTAATCCCGAATGGCTC
GATGGCTCGTAAGTATTCTCTCTATCTAATCTATTCTTTGCTTGGTTAAT
AATACATCATATGTCTCGTCGGCCTCAAATACAACTAACTCAAACTCATG
TTAGAACAGTGCCTAAACGCCGAACAAGCTAAGAATCAATCAATCTATCT
ATCTATCCTTCTTGTTTTTTCTCACATTTTAATATTCTAACCATATAAAC
TTCGTGCGCGTCTGGGGCGTGTCTGTATGTTAAGTCATCCCAGGTGAACA
TACGGATTGCAACCCCTTGGGCATTGGGAAAAGGACCCCACGCATTTCTG
AAAAAGGTAAAAAAAAAAAAAAAAAGGAAAAACAGAAAAAAGGGAAAAGG
GTAGCAGATTAATAGGGAAAAAACAAAAAAAGAAGAAAAGAAAAGAGAAA
TTCATAGGAGCACAAGGCTGGAAAGCAAAAACAAAAAACCAAAGAAAAAC
ATAACACAAAGCGAGAAAAAAAAAAGAGAAAAAAAACAGTAAAAAGAAGA
AAACAAAAACGGAAAAAAAAACACAAACCAAAAAAAAAACAAAAATAAAC
AACACACAAAAAAACCAAAAGAAGCAGACAACGGAAAACGGAAGGCGAGA
AAAAGACAGAAGACAACCGAGCAGAACGAAAAAAACCGGCATGAGGCAGA
CCATAGGCACACAACAGAAACAGATAACCACNGAAAAAACCAACGCGAAA
GACACNATGCGAAAGGCAAAATGGACACAACAAAGGCATAACACAAAGAA
AGAAGACCAAGAAACGAAAACAAGCCAGAAAAACAAGAAAGACAGCAAAC
ACA
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