EY710625

Overview
NameEY710625
Unique NameEY710625
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length1006
Libraries
Library NameType
Sweet orange fruit, development stadium (2 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
EY710625_ssr368 microsatellite EY710625_ssr368:368..379. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
[Close]
BLAST of EY710625 vs. ExPASy Swiss-Prot
Match: UPL3_ARATH (E3 ubiquitin-protein ligase UPL3 OS=Arabidopsis thaliana GN=UPL3 PE=1 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 1.147e-18
Identity = 63/169 (37.28%), Postives = 76/169 (44.97%), Query Frame = 3 
Query:  171 PLCLSDKVHDVKLGDSAEDSTTVPSASDSQNNPXXXXXXXXXXXXXXXXXDFRGGNSYXXXXXXXXXXXXXXXXXXXXXKGVRGSRDRHGRPLFGSSQ*APKG*FFTVGGKTPYRASEYLQGIQRQLVLDEDEDNKFGSTDFKTSSGKTRLRKDIYNIKYKRATRQPER 677
            P+C  DKVHDVKL DS +D     + S  Q NP                 D   GNSY                     +G+RGSRD HGR L  SS   P    FT  GK   R     Q +QRQL+LDED+D++FG +D  +S G      DIY I Y+R   Q  R
Sbjct: 1117 PMCTPDKVHDVKLADSVDDDGL--ATSGRQMNPASGGTSGAAAARASDSIDTGIGNSYGSRGALSFAAAAMAGLGAASGRGIRGSRDLHGRTLNRSSD-EPSKLIFTAAGKQLSRHLTIYQAVQRQLMLDEDDDDRFGGSDLVSSDGSR--FNDIYTIMYQRPDSQVNR 1280
The following BLAST results are available for this feature:
BLAST of EY710625 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
UPL3_ARATH1.147e-1837.28E3 ubiquitin-protein ligase UPL3 OS=Arabidopsis th... [more]
back to top
Properties
Property NameValue
Genbank descriptionCS00-C3-701-083-C11-CT.F Sweet orange fruit, development stadium (2 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY710625 ID=EY710625; Name=EY710625; organism=Citrus sinensis; type=EST; length=1006bp
GAGACCATGCCGGCGCCTGCGGTACGGTCCGGATTCCGGGTCGACCCCGC
GTCCGTGAAGAACTGGATATTTCTCCTGTGGAGATTGATGATGCATTGGT
AATTGAGGATGATGACATCTCAGATGATGAAGATGATGATCATGAAGATG
TGCTAAAAGATGATTCTCTTCCTCTCTGCCTGTCTGACAAAGTGCATGAT
GTGAAATTGGGAGATTCAGCTGAGGATAGTACCACTGTTCCATCGGCCAG
TGATAGCCAGAATAATCCAGCTTCTGGATCCAGTAGCAGGGGTGCTACAG
GTAGGGGTTCTGATTCTGCTGATTTTAGGGGTGGCAATTCTTATGGTTCA
AGGGGTGCAATGTCTTTTGCTGCTGCTGCAATGGCTGGGCTTGGTTCTGC
AAATGGCAAAGGTGTCCGGGGAAGCAGAGATCGGCATGGACGTCCTCTAT
TTGGTAGCTCCCAATGAGCCCCCAAAGGTTAATTTTTCACTGTTGGTGGG
AAAACACCTTACAGGGCATCTGAATATTTACAAGGCATCCAGCGACAGCT
TGTGCTGGATGAAGATGAGGATAACAAGTTTGGGAGCACTGATTTCAAAA
CTAGCAGTGGGAAAACAAGGCTGCGGAAAGATATATACAATATTAAATAT
AAAAGAGCAACACGCCAACCTGAGAGGAAGGAACGCGAGGAAATCAAACA
CAAGGGCAACATAAAAGAACAAAAAAAGAAGAAACGAATAAAACACTCAA
CAAAGAACAAGCCACCCGACATCACGCCCACAAACAGTAGGTGAGGACGC
TGGCCCGTCACGGCCAGAGTTGAAGACGAGCACGACAGACCTAAGAACGG
AACTCGGGAAAGAAAGGCAACGCGAAAAGAGAAATAATAGAGCTACGATA
AGAAGAAGAGCAGAGAGGAAGTAAAACAATGGAAATGAAAAAAAGAGAAG
GCGGAGGACAAATACAAGAGCGAGACAAGACTGGTAGCGGCCGGCACAAA
GAGACC
back to top