EY685732

Overview
NameEY685732
Unique NameEY685732
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length293
Libraries
Library NameType
Sweet orange bark, greenhouse plantcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of EY685732 vs. ExPASy Swiss-Prot
Match: CB4A_SOLLC (Chlorophyll a-b binding protein CP24 10A, chloroplastic OS=Solanum lycopersicum GN=CAP10A PE=3 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 3.644e-13
Identity = 35/40 (87.50%), Postives = 38/40 (95.00%), Query Frame = 1 
Query:    7 VRIPDTEKLDRLKVAEIKHAMLAMVAMLIFYFEAGQGKTP 126
            V +PDTEKL+RLKVAEIKHA LAM+AMLIFYFEAGQGKTP
Sbjct:  211 VYVPDTEKLERLKVAEIKHARLAMLAMLIFYFEAGQGKTP 250
[Close]
BLAST of EY685732 vs. ExPASy Swiss-Prot
Match: CB4B_SOLLC (Chlorophyll a-b binding protein CP24 10B, chloroplastic OS=Solanum lycopersicum GN=CAP10B PE=3 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 1.808e-12
Identity = 33/40 (82.50%), Postives = 38/40 (95.00%), Query Frame = 1 
Query:    7 VRIPDTEKLDRLKVAEIKHAMLAMVAMLIFYFEAGQGKTP 126
            V +PDTEKL+RLK+AEIKH+ LAM+AMLIFYFEAGQGKTP
Sbjct:  211 VYVPDTEKLERLKLAEIKHSRLAMLAMLIFYFEAGQGKTP 250
[Close]
BLAST of EY685732 vs. ExPASy Swiss-Prot
Match: CB4_SPIOL (Chlorophyll a-b binding protein CP24, chloroplastic OS=Spinacia oleracea PE=2 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 6.872e-12
Identity = 32/37 (86.49%), Postives = 36/37 (97.30%), Query Frame = 1 
Query:   16 PDTEKLDRLKVAEIKHAMLAMVAMLIFYFEAGQGKTP 126
            PDT+KL+RLK+AEIKHA LAM+AMLIFYFEAGQGKTP
Sbjct:  219 PDTDKLERLKLAEIKHARLAMLAMLIFYFEAGQGKTP 255
The following BLAST results are available for this feature:
BLAST of EY685732 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 3
Match NameE-valueIdentityDescription
CB4A_SOLLC3.644e-1387.50Chlorophyll a-b binding protein CP24 10A, chloropl... [more]
CB4B_SOLLC1.808e-1282.50Chlorophyll a-b binding protein CP24 10B, chloropl... [more]
CB4_SPIOL6.872e-1286.49Chlorophyll a-b binding protein CP24, chloroplasti... [more]
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Properties
Property NameValue
Genbank descriptionCS00-C2-003-025-E03-CT.F Sweet orange bark, greenhouse plant Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY685732 ID=EY685732; Name=EY685732; organism=Citrus sinensis; type=EST; length=293bp
CCACGCGTCCGCATTCCTGACACTGAGAAGCTTGACAGGCTCAAAGTTGC
TGAGATTAAACATGCTATGCTTGCTATGGTGGCCATGTTGATTTTCTACT
TTGAAGCTGGCCAAGGCAAGACGCCACTTGGGGCTCTTGGTTTGTAAAAC
ATGCTTATGTAGATAACTCACTGATTGGTGTTAAAGCGTAATCAATCGGA
TGTATATGAGTTCCCTCAATGAGAGTTCAATTTGATGGGGTTAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
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