EY685725

Overview
NameEY685725
Unique NameEY685725
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length932
Libraries
Library NameType
Sweet orange bark, greenhouse plantcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
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BLAST of EY685725 vs. ExPASy Swiss-Prot
Match: H3_ACRFO (Histone H3 OS=Acropora formosa PE=3 SV=2)

HSP 1 Score: 44.669 bits (104), Expect = 1.600e-11
Identity = 24/53 (45.28%), Postives = 28/53 (52.83%), Query Frame = 2 
Query:   80 APRTRLATFVCLPSAPTTGGDINSLAYRPGTVPLLKVRTHPNITEAAYSDTPF 238
            APR +LAT     SAP TGG      YRPGTV L ++R +   TE      PF
Sbjct:   16 APRKQLATKAAAKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPF 68

HSP 2 Score: 38.1206 bits (87), Expect = 1.600e-11
Identity = 27/70 (38.57%), Postives = 34/70 (48.57%), Query Frame = 1 
Query:  286 IPFVVIVRLTSRNFLICG**PILLSVLHNDLYCTMRALLVPAEAMQA*LGGLFEDTNLCTILRSRDFIMP 495
            +PF  +VR  +++F               DL     A+L   EA +A L GLFEDTNLC I   R  IMP
Sbjct:   66 LPFQRLVREIAQDF-------------KTDLRFQSSAVLALQEASEAYLVGLFEDTNLCAIHAKRVTIMP 122

HSP 3 Score: 27.335 bits (59), Expect = 1.600e-11
Identity = 13/18 (72.22%), Postives = 17/18 (94.44%), Query Frame = 2 
Query:  476 RVTLLCPQDIQLARKIRG 529
            RVT++ P+DIQLAR+IRG
Sbjct:  117 RVTIM-PKDIQLARRIRG 133
The following BLAST results are available for this feature:
BLAST of EY685725 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
H3_ACRFO1.600e-1145.28Histone H3 OS=Acropora formosa PE=3 SV=2[more]
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Properties
Property NameValue
Genbank descriptionCS00-C2-003-025-D07-CT.F Sweet orange bark, greenhouse plant Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY685725 ID=EY685725; Name=EY685725; organism=Citrus sinensis; type=EST; length=932bp
CAATTGATTGGACGATGATCTCATCCTCCAACATGGCCCCCACCAACCGC
ACTGCACGTTGCTCAAGCGAGAGGAAAGCGCTCCTAGGACGCGACTTGCT
ACCTTCGTCTGCCTTCCGTCTGCGCCCACCACCGGCGGTGATATTAATTC
TCTTGCTTACCGCCCTGGAACAGTCCCCCTTCTAAAAGTGCGCACGCACC
CTAACATTACCGAAGCTGCTTATTCTGACACTCCCTTTCCCAATGCTTGA
TCATGATATTGCTCAGGACTTTAAGGAACCTTATTATCCCTTTTGTTGTC
ATCGTTAGATTGACTTCCCGAAATTTCTTGATATGCGGCTAGTAACCTAT
TTTGTTGTCTGTATTGCACAATGATCTGTACTGCACGATGCGTGCACTGC
TGGTGCCTGCGGAGGCAATGCAGGCTTAGCTTGGTGGGCTCTTCGAGGAC
ACTAACCTCTGCACCATTCTTCGTTCGCGTGACTTTATTATGCCCACAGG
ACATACAGCTTGCCCGGAAGATCCGTGGTTAGTGCGCTTACACGAAATTG
CTGCTTGCTTCAATTGATTGAGTGAAAGGGACATGGGGAATTGGTGATGA
TTATTATGTGAAGCGCCCGTAGTGGTCGTTCGATCAATGGGGGGTCGAGT
TCCCGATTAATTTTTTCTTACACCTCAGCCTCATGCCTCTTAATTCTTAT
TATGATTTTTCCTCCGGTCTAGCTCCTATTTTTTTTTCACACCATATCAT
ACATTTTGTATCATTACCTCTCCCTCCCCCGCGCATCGCCTATCTAACGG
CGAGCTACCCCCCCCCACCGCAGCCCCGTACCCCACCGCCATCGCCAGGA
ACACAATTGTCCACCTGACACACGACAATGACCCTACCCACTCCCGCTTC
CTCTACTACTTACCTGGCTCCCCACGCCGCCA
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