EY685713

Overview
NameEY685713
Unique NameEY685713
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length973
Libraries
Library NameType
Sweet orange bark, greenhouse plantcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
EY685713_ssr842 microsatellite EY685713_ssr842:842..856. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
BLAST of EY685713 vs. ExPASy Swiss-Prot
Match: 3HIDH_ARATH (Probable 3-hydroxyisobutyrate dehydrogenase, mitochondrial OS=Arabidopsis thaliana GN=At4g20930 PE=2 SV=3)

HSP 1 Score: 228.409 bits (581), Expect = 4.856e-59
Identity = 117/176 (66.48%), Postives = 137/176 (77.84%), Query Frame = 2
Query:   11 DSWENPVMLDAPVSGGVLAAEAGTLTFMVGGSEDAYQAAKPLFLSMGKNTIYCGGAGNGAAAKICNNLTMAVSMLGVSEALTLGQSLGISASTLTKILNSSSARCWSSDSYNPVPGVMEGVPASRNYGGGFAI*GSWPKT*TLLWHHQKRLPSIAR*HHTANT*YAKICGKGHESK 538
            D+WE PVMLDAPVSGGVLAAEAGTLTFMVGG EDAY AA+P+  SMG+ +IYCGG+GNG+AAKICNNL MAVSMLG SEAL LGQSLGISASTLT++LN+SS RCWSSD+YNPVPGVM+GVP+SR+Y GGFA      K   L     + +   +     A   Y K+C +GHE+K
Sbjct:  157 DNWEKPVMLDAPVSGGVLAAEAGTLTFMVGGPEDAYLAARPILQSMGRTSIYCGGSGNGSAAKICNNLAMAVSMLGTSEALALGQSLGISASTLTEVLNTSSGRCWSSDAYNPVPGVMKGVPSSRDYNGGFAS-KLMAKDLNLAAASAEEVGHKSPLISKAQEIYKKMCEEGHETK 331          
BLAST of EY685713 vs. ExPASy Swiss-Prot
Match: 3HIDH_PONAB (3-hydroxyisobutyrate dehydrogenase, mitochondrial OS=Pongo abelii GN=HIBADH PE=2 SV=1)

HSP 1 Score: 167.548 bits (423), Expect = 1.017e-40
Identity = 78/125 (62.40%), Postives = 94/125 (75.20%), Query Frame = 2
Query:   29 VMLDAPVSGGVLAAEAGTLTFMVGGSEDAYQAAKPLFLSMGKNTIYCGGAGNGAAAKICNNLTMAVSMLGVSEALTLGQSLGISASTLTKILNSSSARCWSSDSYNPVPGVMEGVPASRNYGGGF 403
            V +DAPVSGGV AA +G LTFMVGG ED + AA+ L   MG N +YCG  G G AAKICNN+ +A+SM+G +EA+ LG  LG+    L KILN SS RCWSSD+YNPVPGVM+GVP++ NY GGF
Sbjct:  153 VFMDAPVSGGVGAARSGNLTFMVGGVEDEFAAAQELLGCMGSNVVYCGAVGTGQAAKICNNMLLAISMIGTAEAMNLGIRLGLDPKLLAKILNMSSGRCWSSDTYNPVPGVMDGVPSANNYQGGF 277          
BLAST of EY685713 vs. ExPASy Swiss-Prot
Match: 3HIDH_HUMAN (3-hydroxyisobutyrate dehydrogenase, mitochondrial OS=Homo sapiens GN=HIBADH PE=1 SV=2)

HSP 1 Score: 167.548 bits (423), Expect = 1.017e-40
Identity = 78/125 (62.40%), Postives = 94/125 (75.20%), Query Frame = 2
Query:   29 VMLDAPVSGGVLAAEAGTLTFMVGGSEDAYQAAKPLFLSMGKNTIYCGGAGNGAAAKICNNLTMAVSMLGVSEALTLGQSLGISASTLTKILNSSSARCWSSDSYNPVPGVMEGVPASRNYGGGF 403
            V +DAPVSGGV AA +G LTFMVGG ED + AA+ L   MG N +YCG  G G AAKICNN+ +A+SM+G +EA+ LG  LG+    L KILN SS RCWSSD+YNPVPGVM+GVP++ NY GGF
Sbjct:  153 VFMDAPVSGGVGAARSGNLTFMVGGVEDEFAAAQELLGCMGSNVVYCGAVGTGQAAKICNNMLLAISMIGTAEAMNLGIRLGLDPKLLAKILNMSSGRCWSSDTYNPVPGVMDGVPSANNYQGGF 277          
BLAST of EY685713 vs. ExPASy Swiss-Prot
Match: 3HIDH_BOVIN (3-hydroxyisobutyrate dehydrogenase, mitochondrial OS=Bos taurus GN=HIBADH PE=2 SV=1)

HSP 1 Score: 166.777 bits (421), Expect = 1.735e-40
Identity = 78/125 (62.40%), Postives = 94/125 (75.20%), Query Frame = 2
Query:   29 VMLDAPVSGGVLAAEAGTLTFMVGGSEDAYQAAKPLFLSMGKNTIYCGGAGNGAAAKICNNLTMAVSMLGVSEALTLGQSLGISASTLTKILNSSSARCWSSDSYNPVPGVMEGVPASRNYGGGF 403
            V +DAPVSGGV AA +G LTFMVGG E+ + AA+ L   MG N +YCG  G G AAKICNNL +A+SM+G +EA+ LG  LG+    L KILN SS RCWSSD+YNPVPGVM+GVP++ NY GGF
Sbjct:  153 VFMDAPVSGGVGAARSGNLTFMVGGVEEEFAAAQELLGCMGSNVVYCGAVGTGQAAKICNNLLLAISMIGTAEAMNLGIRLGLDPKLLAKILNMSSGRCWSSDTYNPVPGVMDGVPSANNYQGGF 277          
BLAST of EY685713 vs. ExPASy Swiss-Prot
Match: 3HIDH_MOUSE (3-hydroxyisobutyrate dehydrogenase, mitochondrial OS=Mus musculus GN=Hibadh PE=2 SV=1)

HSP 1 Score: 164.851 bits (416), Expect = 6.593e-40
Identity = 77/125 (61.60%), Postives = 92/125 (73.60%), Query Frame = 2
Query:   29 VMLDAPVSGGVLAAEAGTLTFMVGGSEDAYQAAKPLFLSMGKNTIYCGGAGNGAAAKICNNLTMAVSMLGVSEALTLGQSLGISASTLTKILNSSSARCWSSDSYNPVPGVMEGVPASRNYGGGF 403
            V +DAPVSGGV AA +G LTFMVGG ED + AA+ L   MG N +YCG  G G +AKICNN+ +A+SM+G +EA+ LG   G+    L KILN SS RCWSSD+YNPVPGVM GVP+S NY GGF
Sbjct:  152 VFMDAPVSGGVGAARSGNLTFMVGGVEDEFAAAQELLECMGSNVVYCGAVGTGQSAKICNNMLLAISMIGTAEAMNLGIRSGLDPKLLAKILNMSSGRCWSSDTYNPVPGVMHGVPSSNNYQGGF 276          
BLAST of EY685713 vs. ExPASy Swiss-Prot
Match: 3HIDH_RAT (3-hydroxyisobutyrate dehydrogenase, mitochondrial OS=Rattus norvegicus GN=Hibadh PE=1 SV=3)

HSP 1 Score: 163.31 bits (412), Expect = 1.918e-39
Identity = 76/125 (60.80%), Postives = 94/125 (75.20%), Query Frame = 2
Query:   29 VMLDAPVSGGVLAAEAGTLTFMVGGSEDAYQAAKPLFLSMGKNTIYCGGAGNGAAAKICNNLTMAVSMLGVSEALTLGQSLGISASTLTKILNSSSARCWSSDSYNPVPGVMEGVPASRNYGGGF 403
            V +DAPVSGGV AA +G LTFMVGG E+ + AA+ L   MG N +YCG  G+G +AKICNN+ +A+SM+G +EA+ LG   G+    L KILN SS RCWSSD+YNPVPGVM+GVP+S NY GGF
Sbjct:  152 VFMDAPVSGGVGAARSGNLTFMVGGVENEFAAAQELLGCMGSNVLYCGAVGSGQSAKICNNMLLAISMIGTAEAMNLGIRSGLDPKLLAKILNMSSGRCWSSDTYNPVPGVMDGVPSSNNYQGGF 276          
BLAST of EY685713 vs. ExPASy Swiss-Prot
Match: 3HIDH_DICDI (Probable 3-hydroxyisobutyrate dehydrogenase, mitochondrial OS=Dictyostelium discoideum GN=hibA PE=3 SV=1)

HSP 1 Score: 151.369 bits (381), Expect = 7.544e-36
Identity = 72/124 (58.06%), Postives = 85/124 (68.55%), Query Frame = 2
Query:   32 MLDAPVSGGVLAAEAGTLTFMVGGSEDAYQAAKPLFLSMGKNTIYCGGAGNGAAAKICNNLTMAVSMLGVSEALTLGQSLGISASTLTKILNSSSARCWSSDSYNPVPGVMEGVPASRNYGGGF 403
            MLD PVSGG   AEAGTLTFMVGGSE  +  AK     MGKN ++CG  G G  AK+CNNL + +SM+ VSEA+ LG   G+    L  I N+SSARCW+S+ YNP PGV+E  PASR Y GGF
Sbjct:  137 MLDCPVSGGTGGAEAGTLTFMVGGSEQDFNTAKTYLECMGKNIVHCGDVGTGQVAKVCNNLVLGISMIAVSEAMNLGVKQGMDPKKLAGIFNTSSARCWTSELYNPCPGVIETSPASRGYTGGF 260          
BLAST of EY685713 vs. ExPASy Swiss-Prot
Match: 3HIDH_DROME (Probable 3-hydroxyisobutyrate dehydrogenase, mitochondrial OS=Drosophila melanogaster GN=CG15093 PE=1 SV=2)

HSP 1 Score: 146.362 bits (368), Expect = 2.427e-34
Identity = 68/124 (54.84%), Postives = 88/124 (70.97%), Query Frame = 2
Query:   35 LDAPVSGGVLAAEAGTLTFMVGGSEDAYQAAKPLFLSMGKNTIYCGGAGNGAAAKICNNLTMAVSMLGVSEALTLGQSLGISASTLTKILNSSSARCWSSDSYNPVPGVMEGVPASRNYGGGFA 406
            +DAPVSGGV  AE  TLTFMVGG+E  Y A K +   MGK   +CG  G G AAK+CNN+ +A+SM+GVSEA+ L    G+ A+   +I+NSS+ RCW+S+ YNPVPGV    PA+R+Y GGF+
Sbjct:  142 IDAPVSGGVPGAEQATLTFMVGGTEAEYNAVKAVLECMGKKITHCGVYGMGQAAKLCNNMMLAISMIGVSEAMNLAVRQGLDANVFAEIINSSTGRCWASEIYNPVPGVCPSAPANRDYAGGFS 265          
BLAST of EY685713 vs. ExPASy Swiss-Prot
Match: 3HIDH_CAEEL (Probable 3-hydroxyisobutyrate dehydrogenase, mitochondrial OS=Caenorhabditis elegans GN=B0250.5 PE=2 SV=1)

HSP 1 Score: 144.821 bits (364), Expect = 5.926e-34
Identity = 66/124 (53.23%), Postives = 88/124 (70.97%), Query Frame = 2
Query:   35 LDAPVSGGVLAAEAGTLTFMVGGSEDA-YQAAKPLFLSMGKNTIYCGGAGNGAAAKICNNLTMAVSMLGVSEALTLGQSLGISASTLTKILNSSSARCWSSDSYNPVPGVMEGVPASRNYGGGF 403
            +DAP+SGGV  A+  TLTFMVG   DA ++ A+ +   MGKN +  G  GNG AAKICNN+ + + M+ V+E + LG S+G+ A  L  I+N+SS RCWSSD+YNPVPGV+E +P+ R Y GGF
Sbjct:  117 IDAPISGGVTGAQQATLTFMVGAGNDATFKRAEAVLSLMGKNIVNLGAVGNGTAAKICNNMLLGIQMVAVAETMNLGISMGLDAKALAGIVNTSSGRCWSSDTYNPVPGVIENIPSCRGYAGGF 240          

HSP 2 Score: 21.1718 bits (43), Expect = 5.926e-34
Identity = 11/31 (35.48%), Postives = 15/31 (48.39%), Query Frame = 1
Query:  415 LMAKDLNLALASPKEVAVNCPLTSHGQHVIR 507
            LMAKDL+LA  +        P+ S    + R
Sbjct:  244 LMAKDLSLAQNASTNTQAPTPMGSLAHQIYR 274          
BLAST of EY685713 vs. ExPASy Swiss-Prot
Match: MMSB_PSEAE (3-hydroxyisobutyrate dehydrogenase OS=Pseudomonas aeruginosa GN=mmsB PE=2 SV=1)

HSP 1 Score: 124.405 bits (311), Expect = 1.353e-29
Identity = 58/126 (46.03%), Postives = 81/126 (64.29%), Query Frame = 2
Query:   32 MLDAPVSGGVLAAEAGTLTFMVGGSEDAYQAAKPLFLSMGKNTIYCGGAGNGAAAKICNNLTMAVSMLGVSEALTLGQSLGISASTLTKILNSSSARCWSSDSYNPVPGVMEGVPASRNYGGGFAI 409
            +LDAPVSGGV  A AGTL+F+VGG  + +  A+P+  +MG+N  + G  G G  AKICNN+ + + M G +EAL LG   G+  + L++++  SS   W+ + YNP PGVM   PAS  Y GGF +
Sbjct:  116 LLDAPVSGGVGGARAGTLSFIVGGPAEGFARARPVLENMGRNIFHAGDHGAGQVAKICNNMLLGILMAGTAEALALGVKNGLDPAVLSEVMKQSSGGNWALNLYNPWPGVMPQAPASNGYAGGFQV 241          

HSP 2 Score: 26.9498 bits (58), Expect = 1.353e-29
Identity = 13/24 (54.17%), Postives = 17/24 (70.83%), Query Frame = 1
Query:  409 LRLMAKDLNLALASPKEVAVNCPL 480
            +RLM KDL LALA+ + V  + PL
Sbjct:  241 VRLMNKDLGLALANAQAVQASTPL 264          
The following BLAST results are available for this feature:
BLAST of EY685713 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 15
Match NameE-valueIdentityDescription
3HIDH_ARATH4.856e-5966.48Probable 3-hydroxyisobutyrate dehydrogenase, mitoc... [more]
3HIDH_PONAB1.017e-4062.403-hydroxyisobutyrate dehydrogenase, mitochondrial ... [more]
3HIDH_HUMAN1.017e-4062.403-hydroxyisobutyrate dehydrogenase, mitochondrial ... [more]
3HIDH_BOVIN1.735e-4062.403-hydroxyisobutyrate dehydrogenase, mitochondrial ... [more]
3HIDH_MOUSE6.593e-4061.603-hydroxyisobutyrate dehydrogenase, mitochondrial ... [more]
3HIDH_RAT1.918e-3960.803-hydroxyisobutyrate dehydrogenase, mitochondrial ... [more]
3HIDH_DICDI7.544e-3658.06Probable 3-hydroxyisobutyrate dehydrogenase, mitoc... [more]
3HIDH_DROME2.427e-3454.84Probable 3-hydroxyisobutyrate dehydrogenase, mitoc... [more]
3HIDH_CAEEL5.926e-3453.23Probable 3-hydroxyisobutyrate dehydrogenase, mitoc... [more]
MMSB_PSEAE1.353e-2946.033-hydroxyisobutyrate dehydrogenase OS=Pseudomonas ... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C2-003-025-C04-CT.F Sweet orange bark, greenhouse plant Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY685713 ID=EY685713; Name=EY685713; organism=Citrus sinensis; type=EST; length=973bp
CCACGCGTCCGATTCATGGGAAAACCCTGTCATGTTGGATGCTCCCGTCT
CTGGGGGTGTTCTTGCTGCAGAGGCTGGTACACTAACTTTCATGGTTGGT
GGCTCTGAGGATGCATATCAGGCTGCAAAACCCTTGTTCCTCTCAATGGG
GAAAAACACAATATACTGTGGTGGAGCAGGAAATGGGGCGGCAGCAAAAA
TTTGCAATAACTTGACAATGGCTGTGAGCATGCTTGGGGTGTCAGAAGCC
CTGACACTTGGTCAGTCGCTAGGAATATCTGCTAGTACTCTAACAAAGAT
ATTGAACTCTTCAAGTGCTCGCTGTTGGAGTAGTGACAGTTATAATCCTG
TTCCTGGGGTGATGGAAGGGGTGCCGGCTTCAAGGAATTATGGTGGTGGG
TTTGCAATCTAAGGCTCATGGCCAAAGACTTGAACCTTGCTTTGGCATCA
CCAAAAGAGGTTGCCGTCAATTGCCCGTTAACATCACACGGCCAACACGT
AATACGCGAAGATCTGTGGAAAAGGACATGAATCCAAGCGACTTCTCCCT
GCGAATTCCAAAATAATAATGAAAGCACGGAAAAATTTTAACTTCAAAAT
TCAGGACCATAGCTATTACCAATCCCCTACGGCATACCCCTCCAAAAGCC
CCGGCTATTCCATTACACATTACCTCCCCACACGGACCGCCCCTTTTACC
CCGATCACCAGTCCCAATACCAACACCCGTCATCACCTCCCCCTAAGTTC
CCCCCCACGACAACAAGACGAACAACACATAGCAGACCAAACAACTGGCA
GGACAACCAACCACAACCGAACGCGCCTTACCTACCGCCACAACCAAACC
AAACCACACAACAACCAGGACGCCCCCAACCACACCCCAGATGAAAAGGA
GGGGCGGAGGACGGATGACGGACCGACACAACAACACAAGAGACGACGGG
CGCAAAGATAAGAGAGACTCCCC
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