EY685690

Overview
NameEY685690
Unique NameEY685690
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length1003
Libraries
Library NameType
Sweet orange bark, greenhouse plantcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY685690 vs. ExPASy Swiss-Prot
Match: DCDA_PSEFL (Diaminopimelate decarboxylase OS=Pseudomonas fluorescens GN=lysA PE=3 SV=1)

HSP 1 Score: 104.375 bits (259), Expect = 1.109e-21
Identity = 53/76 (69.74%), Postives = 60/76 (78.95%), Query Frame = -2
Query:   28 NVECTDEL-ERVQVLAAEMGVGAPISLRVNPDVDAGTHPYISTGRKENKMGIAIADAEDVYINRGPTAKPGSMGVD 252
            N+E TDEL  R+Q++AAE+GV APISLRVNPDVDAGTHPYISTG KENK GIAIADAEDVY+          +GVD
Sbjct:  123 NIESTDELGSRLQIVAAELGVRAPISLRVNPDVDAGTHPYISTGLKENKFGIAIADAEDVYVRAAQLPNLEVLGVD 198          
BLAST of EY685690 vs. ExPASy Swiss-Prot
Match: DCDA_PSEAE (Diaminopimelate decarboxylase OS=Pseudomonas aeruginosa GN=lysA PE=3 SV=2)

HSP 1 Score: 91.6633 bits (226), Expect = 7.436e-18
Identity = 48/75 (64.00%), Postives = 55/75 (73.33%), Query Frame = -2
Query:   28 NVECTDELERVQVLAAEMGVGAPISLRVNPDVDAGTHPYISTGRKENKMGIAIADAEDVYINRGPTAKPGSMGVD 252
            NVE  +ELER+Q +AAE+GV AP+SLRVNPDVDA THPYISTG KENK GIAI +AE VY           +GVD
Sbjct:  123 NVESGEELERLQRVAAELGVKAPVSLRVNPDVDAQTHPYISTGLKENKFGIAIDEAEAVYARAAELDHLEVIGVD 197          
BLAST of EY685690 vs. ExPASy Swiss-Prot
Match: DCDA_HAEIN (Diaminopimelate decarboxylase OS=Haemophilus influenzae GN=lysA PE=3 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 1.005e-14
Identity = 38/60 (63.33%), Postives = 46/60 (76.67%), Query Frame = -2
Query:   73 NVECTDELERVQVLAAEMGVGAPISLRVNPDVDAGTHPYISTGRKENKMGIAIADAEDVY 252
            NVE   EL+ +  +A EMG  APISLRVNPDVDA THPYISTG KENK G+++ +A +VY
Sbjct:  123 NVESVSELKHINQIAGEMGKIAPISLRVNPDVDAHTHPYISTGLKENKFGVSVNEAREVY 182          
BLAST of EY685690 vs. ExPASy Swiss-Prot
Match: DCDA_NEIMB (Diaminopimelate decarboxylase OS=Neisseria meningitidis serogroup B GN=lysA PE=3 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 2.239e-14
Identity = 39/69 (56.52%), Postives = 49/69 (71.01%), Query Frame = -2
Query:   73 AVIGGFLFSNVECTDELERVQVLAAEMGVGAPISLRVNPDVDAGTHPYISTGRKENKMGIAIADAEDVY 279
            A+  G    N+E   E++R+Q +AA +G  AP+SLR+NPDVDA THPYISTG K NK GIA ADA + Y
Sbjct:  106 ALNAGVKCFNMESIPEIDRIQKVAARLGKTAPVSLRINPDVDAKTHPYISTGLKANKFGIAYADALEAY 174          
BLAST of EY685690 vs. ExPASy Swiss-Prot
Match: DCDA_NEIMA (Diaminopimelate decarboxylase OS=Neisseria meningitidis serogroup A GN=lysA PE=3 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 6.514e-14
Identity = 41/84 (48.81%), Postives = 53/84 (63.10%), Query Frame = -2
Query:   28 AVIGGFLFSNVECTDELERVQVLAAEMGVGAPISLRVNPDVDAGTHPYISTGRKENKMGIAIADAEDVYINRGPTAKPGSMGVD 279
            A+  G    N+E   E++R+Q +AA +G  A +SLRVNPDVDA THPYISTG K NK GIA ADA + Y +         +G+D
Sbjct:  106 ALNAGVKCFNMESIPEIDRIQKVAARLGKTASVSLRVNPDVDAKTHPYISTGLKANKFGIAYADALEAYRHAAQQPNLKIIGID 189          
BLAST of EY685690 vs. ExPASy Swiss-Prot
Match: DCDA_VIBCH (Diaminopimelate decarboxylase OS=Vibrio cholerae GN=lysA PE=3 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 1.895e-13
Identity = 37/60 (61.67%), Postives = 44/60 (73.33%), Query Frame = -2
Query:   73 NVECTDELERVQVLAAEMGVGAPISLRVNPDVDAGTHPYISTGRKENKMGIAIADAEDVY 252
            NVE   EL+R+  +A E+GV APISLR+NPDVDA THPYISTG ++NK GI    A  VY
Sbjct:  124 NVESEPELQRLNKVAGELGVKAPISLRINPDVDAKTHPYISTGLRDNKFGITFDRAAQVY 183          
BLAST of EY685690 vs. ExPASy Swiss-Prot
Match: DCDA_HELPJ (Diaminopimelate decarboxylase OS=Helicobacter pylori J99 GN=lysA PE=3 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 2.317e-11
Identity = 31/64 (48.44%), Postives = 47/64 (73.44%), Query Frame = -2
Query:   70 LFSNVECTDELERVQVLAAEMGVGAPISLRVNPDVDAGTHPYISTGRKENKMGIAIADAEDVYI 261
            LF NVE   EL+ ++ +A  +G+ A IS+R+NP++DA THPYISTG KENK G+   +A ++++
Sbjct:  106 LFLNVESFMELKTIETIAQSLGIKARISIRINPNIDAKTHPYISTGLKENKFGVEEKEALEMFL 169          
BLAST of EY685690 vs. ExPASy Swiss-Prot
Match: DCDA_HELPY (Diaminopimelate decarboxylase OS=Helicobacter pylori GN=lysA PE=1 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 3.026e-11
Identity = 31/64 (48.44%), Postives = 46/64 (71.88%), Query Frame = -2
Query:   70 LFSNVECTDELERVQVLAAEMGVGAPISLRVNPDVDAGTHPYISTGRKENKMGIAIADAEDVYI 261
            LF NVE   EL  ++ +A  +G+ A IS+R+NP++DA THPYISTG KENK G+   +A ++++
Sbjct:  106 LFLNVESFMELTTIETIAQSLGIKARISIRINPNIDAKTHPYISTGLKENKFGVGEKEALEMFL 169          
The following BLAST results are available for this feature:
BLAST of EY685690 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 8
Match NameE-valueIdentityDescription
DCDA_PSEFL1.109e-2169.74Diaminopimelate decarboxylase OS=Pseudomonas fluor... [more]
DCDA_PSEAE7.436e-1864.00Diaminopimelate decarboxylase OS=Pseudomonas aerug... [more]
DCDA_HAEIN1.005e-1463.33Diaminopimelate decarboxylase OS=Haemophilus influ... [more]
DCDA_NEIMB2.239e-1456.52Diaminopimelate decarboxylase OS=Neisseria meningi... [more]
DCDA_NEIMA6.514e-1448.81Diaminopimelate decarboxylase OS=Neisseria meningi... [more]
DCDA_VIBCH1.895e-1361.67Diaminopimelate decarboxylase OS=Vibrio cholerae G... [more]
DCDA_HELPJ2.317e-1148.44Diaminopimelate decarboxylase OS=Helicobacter pylo... [more]
DCDA_HELPY3.026e-1148.44Diaminopimelate decarboxylase OS=Helicobacter pylo... [more]
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Properties
Property NameValue
Genbank descriptionCS00-C2-003-024-H09-CT.F Sweet orange bark, greenhouse plant Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY685690 ID=EY685690; Name=EY685690; organism=Citrus sinensis; type=EST; length=1003bp
CCTGCGGGTCCGGGTCCGGAATTCCGGGTCCACGCCCATACTTCCAGGTT
TGGCAGTTGGGCCCCTATTGATGTACACGTCCTCGGCGTCGGCAATGGCG
ATGCCCATCTTGTTCTCTTTGCGACCGGTGGAAATGTACGGGTGAGTGCC
GGCGTCTACGTCCGGGTTGACCCGCAGGGAGATCGGTGCGCCAACGCCCA
TCTCGGCGGCCAGCACTTGCACGCGCTCCAACTCGTCAGTGCACTCGACG
TTGGAGAACAGAAACCCCCCTATCACGGCCAGCCCTCTCCCTTCCCCGCC
CTACCACACCACCTGACACACCCGCCCAGCCTACCCTACCACCAACGCCC
CACATACGCTCCGCGCCACCCGGCACACCTGGCTGAGTCTCATTCAGCTC
ACACCCGAAACATAATGTCGACCCCTGCACGCTAGTGCACGTGGCCGGGG
CTGACAACAACAAACATCGTCGCACCACAATTCACTCACCAGATCAAGCG
AACGCGGCTCTCGCCAATAACCGAGCGGCCCACGTCACCAGCAAGCTGCG
AACTACCAACCCCTCTTGAGGGCCGCCTCCCGGTCCCCCCCGAGTGCCCC
AAACTCACACTCCCTCCTACCCTCCCTGCTCTCTCCCTACAGTCGACAAG
AACCCACTTCTGGCAAACGCTCCATGACCCCCAACGTCTATCCTGGCACT
CCGCACAATCCCGCGCTGCTCGCCATATTTACCAACATAGCTGAATGCCA
ACGATCCAGTCCCCTGCACTCAACCAAAACCTAATGAACCTGCCTCAGGC
TATGGCCCCCTCCCGGCCTACCACCCACTCACCACTTCGCACCACAGCGA
GCTCCTCAATGCCCCCCACCACCGCACGCCGACTACCTCGGTCCCCCTAC
CGAACGTTGCACTCCCCCTCGCGCCATACGCCGACACGCACCTCAAGCTC
GACCACACAACCCACAGCCTAACGCACTGGCGCGTCACACCACCAACGCT
CCC
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