EY685631

Overview
NameEY685631
Unique NameEY685631
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length962
Libraries
Library NameType
Sweet orange bark, greenhouse plantcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig10164 contig Csv1_Contig10164:879..1840. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of EY685631 vs. ExPASy Swiss-Prot
Match: TGD1_ARATH (Protein TRIGALACTOSYLDIACYLGLYCEROL 1, chloroplastic OS=Arabidopsis thaliana GN=TGD1 PE=1 SV=1)

HSP 1 Score: 167.162 bits (422), Expect = 1.303e-40
Identity = 80/99 (80.81%), Postives = 91/99 (91.92%), Query Frame = 2
Query:    2 GTMQVSHQTDTLRVLGTDPVDYLVTPRVIASCIALPFLTLMCFTLGMASSAILSDGVYGININIILDSAPRALISWDIIRAMIKSQVFGAIISIVSSAW 298
            GTMQVS QTDTLRVLG DP+DYL+TPRVIASC+ALPFLTLMCFT+GMASSA+LSD VYGI+INII+DSA RAL  WDI+ AMIKSQVFGAIIS++S +W
Sbjct:  203 GTMQVSEQTDTLRVLGADPIDYLITPRVIASCLALPFLTLMCFTVGMASSALLSDAVYGISINIIMDSAHRALRPWDIVSAMIKSQVFGAIISVISCSW 301          
BLAST of EY685631 vs. ExPASy Swiss-Prot
Match: Y1045_SYNY3 (UPF0393 membrane protein Slr1045 OS=Synechocystis sp. (strain PCC 6803) GN=slr1045 PE=3 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 3.123e-18
Identity = 45/99 (45.45%), Postives = 61/99 (61.62%), Query Frame = 2
Query:    2 GTMQVSHQTDTLRVLGTDPVDYLVTPRVIASCIALPFLTLMCFTLGMASSAILSDGVYGININIILDSAPRALISWDIIRAMIKSQVFGAIISIVSSAW 298
            GTM+V+ Q D L +L TDP+DYLV PRVIA  + LP LT +   +GMA   ++S  +Y IN  I L+S       WD+   + KS VFG II+I+  +W
Sbjct:  118 GTMRVTEQLDALYMLRTDPIDYLVVPRVIACGLMLPILTGLSLFVGMAGGLVISSSLYAINPTIFLNSVQNFTQLWDVFACLFKSLVFGVIIAIIGCSW 216          
BLAST of EY685631 vs. ExPASy Swiss-Prot
Match: YCF63_PORPU (UPF0393 membrane protein ycf63 OS=Porphyra purpurea GN=ycf63 PE=3 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 1.773e-13
Identity = 42/98 (42.86%), Postives = 57/98 (58.16%), Query Frame = 2
Query:    5 TMQVSHQTDTLRVLGTDPVDYLVTPRVIASCIALPFLTLMCFTLGMASSAILSDGVYGININIILDSAPRALISWDIIRAMIKSQVFGAIISIVSSAW 298
            TM+ + Q D L +L T+P+DYLV P+V A CI LP L+ +  T  +A S  +S  +YGI  +I L SA  AL   D    + KS  FG II+ +S  W
Sbjct:  115 TMETTEQIDALYLLNTNPIDYLVFPKVAACCIMLPILSTISLTASIAISIFVSFVMYGIPSSIFLKSAFLALSVSDFFSCLQKSLCFGTIIAFISCQW 212          
BLAST of EY685631 vs. ExPASy Swiss-Prot
Match: Y041_RICTY (UPF0393 membrane protein RT0041 OS=Rickettsia typhi GN=RT0041 PE=3 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 1.660e-11
Identity = 41/97 (42.27%), Postives = 59/97 (60.82%), Query Frame = 2
Query:    5 TMQVSHQTDTLRVLGTDPVDYLVTPRVIASCIALPFLTLMCFTLGMASSAILSDGVYGININ--IILDSAPRALISWDIIRAMIKSQVFGAIISIVS 289
            TM+V+ Q D L  L TDP+ YLV PRVIA+ I +P L L+   +G+    ++  G+Y +N N    L S  + L   D+I  ++K+ VFG IISI+S
Sbjct:  122 TMKVTEQVDALYTLSTDPIKYLVCPRVIAAIITMPCLVLIGDVIGVMGGYLV--GIYKLNFNSTAYLTSTFQYLELIDVISGLVKATVFGFIISIIS 216          
BLAST of EY685631 vs. ExPASy Swiss-Prot
Match: Y096_RICPR (UPF0393 membrane protein RP096 OS=Rickettsia prowazekii GN=RP096 PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 4.829e-11
Identity = 41/97 (42.27%), Postives = 59/97 (60.82%), Query Frame = 2
Query:    5 TMQVSHQTDTLRVLGTDPVDYLVTPRVIASCIALPFLTLMCFTLGMASSAILSDGVYGININ--IILDSAPRALISWDIIRAMIKSQVFGAIISIVS 289
            TM+V+ Q D L  L TDP+ YLV PRVIA+ I +P L L+   +G+    ++  G+Y ++ N    L S  + L   D+I  +IK+ VFG IISI+S
Sbjct:  122 TMRVTEQVDALYTLSTDPIKYLVCPRVIAAIITMPCLVLIGDIIGVMGGYLV--GIYKLDFNSTAYLTSTFQYLEPIDVISGLIKATVFGFIISIIS 216          
The following BLAST results are available for this feature:
BLAST of EY685631 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 5
Match NameE-valueIdentityDescription
TGD1_ARATH1.303e-4080.81Protein TRIGALACTOSYLDIACYLGLYCEROL 1, chloroplast... [more]
Y1045_SYNY33.123e-1845.45UPF0393 membrane protein Slr1045 OS=Synechocystis ... [more]
YCF63_PORPU1.773e-1342.86UPF0393 membrane protein ycf63 OS=Porphyra purpure... [more]
Y041_RICTY1.660e-1142.27UPF0393 membrane protein RT0041 OS=Rickettsia typh... [more]
Y096_RICPR4.829e-1142.27UPF0393 membrane protein RP096 OS=Rickettsia prowa... [more]
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Properties
Property NameValue
Genbank descriptionCS00-C2-003-024-B02-CT.F Sweet orange bark, greenhouse plant Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY685631 ID=EY685631; Name=EY685631; organism=Citrus sinensis; type=EST; length=962bp
GGGAACAATGCAGGTCTCCCATCAAACTGACACGTTGAGAGTTCTTGGTA
CCGATCCTGTTGATTACTTGGTGACACCTAGAGTAATTGCTTCCTGTATC
GCTCTACCATTTTTGACTTTGATGTGTTTCACTTTGGGGATGGCTTCCAG
TGCCATACTTTCTGACGGTGTTTATGGCATTAACATCAACATAATATTGG
ATTCAGCTCCGAGAGCACTTATATCATGGGATATAATCAGAGCAATGATA
AAATCTCAGGTCTTTGGTGCAATCATCTCTATAGTGAGTAGTGCATGGAG
AGATCCCCACCTCAAGAAAGCCAAACCACCCACCCCAACACTCCCCTAAC
CCACAAGCACAAACTCCCCAAGCAACCACAGCAACCACACACACCGCAAC
AACAAAATAACCCCCCCACCTACTCCGTCCACAAACACCACACAAGCAGT
CCCGACACAACACAAAGCTGAGCACCAAGAATACACAAGACTAATAGACA
TAGCCACAATCAACAAACTCCACCGTCCGCAAGCCACCACCAACACCACC
ACACGCCCGCACCCCACCACACACGCATGCACCCCCCAACCCACCACCAC
CCCACCACCCTCCGCCCGCCTTCCCAAATCCACAACCCGCCACAACGTAC
CGCGGCCAGACCTCCCACCCACACCAAGAGCAAACACAAACAGCACGACA
CACCCCCCACAAAACCACGCAACAAACTCCACGCAAACCCCCACCAACAA
CCACCGAAAAAAACACCCACAAACCACAAACCAGCGCGACACCCGACACC
GAACGAAGGCAACCCACACACCCCACACTCACAAACACCACCCCCGCAGC
CCAAACCCATCGCACACAACAACCTCAACAACAACCAACAACAAACAGAC
CAAACCAAAACCCAAAAGAACAACAAAAACACACAAACCCACAACGACAA
CGCAAGCACATG
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