EY685604

Overview
NameEY685604
Unique NameEY685604
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length580
Libraries
Library NameType
Sweet orange bark, greenhouse plantcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig1727 contig Csv1_Contig1727:284..863. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of EY685604 vs. ExPASy Swiss-Prot
Match: RS132_ARATH (40S ribosomal protein S13-2 OS=Arabidopsis thaliana GN=RPS13B PE=2 SV=1)

HSP 1 Score: 164.081 bits (414), Expect = 4.569e-40
Identity = 81/82 (98.78%), Postives = 82/82 (100.00%), Query Frame = 1 
Query:   10 RILRILKAHGLAPEIPEDLYHLIKKAVAIRKHLERNRKDKDSKFRLILVESRIHRLARYYKKTKKLPPVWKYESTTASTLVA 255
            +ILRILKAHGLAPEIPEDLYHLIKKAVAIRKHLERNRKDKDSKFRLILVESRIHRLARYYKKTKKLPPVWKYESTTASTLVA
Sbjct:   70 KILRILKAHGLAPEIPEDLYHLIKKAVAIRKHLERNRKDKDSKFRLILVESRIHRLARYYKKTKKLPPVWKYESTTASTLVA 151
[Close]
BLAST of EY685604 vs. ExPASy Swiss-Prot
Match: RS131_ARATH (40S ribosomal protein S13-1 OS=Arabidopsis thaliana GN=RPS13A PE=2 SV=1)

HSP 1 Score: 164.081 bits (414), Expect = 4.569e-40
Identity = 81/82 (98.78%), Postives = 82/82 (100.00%), Query Frame = 1 
Query:   10 RILRILKAHGLAPEIPEDLYHLIKKAVAIRKHLERNRKDKDSKFRLILVESRIHRLARYYKKTKKLPPVWKYESTTASTLVA 255
            +ILRILKAHGLAPEIPEDLYHLIKKAVAIRKHLERNRKDKDSKFRLILVESRIHRLARYYKKTKKLPPVWKYESTTASTLVA
Sbjct:   70 KILRILKAHGLAPEIPEDLYHLIKKAVAIRKHLERNRKDKDSKFRLILVESRIHRLARYYKKTKKLPPVWKYESTTASTLVA 151
[Close]
BLAST of EY685604 vs. ExPASy Swiss-Prot
Match: RS13_SOYBN (40S ribosomal protein S13 OS=Glycine max GN=RPS13 PE=2 SV=1)

HSP 1 Score: 162.925 bits (411), Expect = 1.018e-39
Identity = 80/82 (97.56%), Postives = 82/82 (100.00%), Query Frame = 1 
Query:   10 RILRILKAHGLAPEIPEDLYHLIKKAVAIRKHLERNRKDKDSKFRLILVESRIHRLARYYKKTKKLPPVWKYESTTASTLVA 255
            +ILRILKAHGLAPEIPEDLYHLIKKAV+IRKHLERNRKDKDSKFRLILVESRIHRLARYYKKTKKLPPVWKYESTTASTLVA
Sbjct:   70 KILRILKAHGLAPEIPEDLYHLIKKAVSIRKHLERNRKDKDSKFRLILVESRIHRLARYYKKTKKLPPVWKYESTTASTLVA 151
[Close]
BLAST of EY685604 vs. ExPASy Swiss-Prot
Match: RS13_PEA (40S ribosomal protein S13 OS=Pisum sativum GN=RPS13 PE=2 SV=1)

HSP 1 Score: 159.458 bits (402), Expect = 1.125e-38
Identity = 79/82 (96.34%), Postives = 81/82 (98.78%), Query Frame = 1 
Query:   10 RILRILKAHGLAPEIPEDLYHLIKKAVAIRKHLERNRKDKDSKFRLILVESRIHRLARYYKKTKKLPPVWKYESTTASTLVA 255
            +ILRILKAHGLAPEIPEDLYHLIKKAV+IRKHLER RKDKDSKFRLILVESRIHRLARYYKKTKKLPPVWKYESTTASTLVA
Sbjct:   70 KILRILKAHGLAPEIPEDLYHLIKKAVSIRKHLERFRKDKDSKFRLILVESRIHRLARYYKKTKKLPPVWKYESTTASTLVA 151
[Close]
BLAST of EY685604 vs. ExPASy Swiss-Prot
Match: RS13_MAIZE (40S ribosomal protein S13 OS=Zea mays GN=RPS13 PE=2 SV=1)

HSP 1 Score: 157.918 bits (398), Expect = 3.274e-38
Identity = 78/82 (95.12%), Postives = 80/82 (97.56%), Query Frame = 1 
Query:   10 RILRILKAHGLAPEIPEDLYHLIKKAVAIRKHLERNRKDKDSKFRLILVESRIHRLARYYKKTKKLPPVWKYESTTASTLVA 255
            +ILRILKAHGLAPEIPEDLY LIKKAVAIRKHLERNRKDKDSKFRLILVESRIHRLARYYK+TKKLPP WKYESTTASTLVA
Sbjct:   70 KILRILKAHGLAPEIPEDLYFLIKKAVAIRKHLERNRKDKDSKFRLILVESRIHRLARYYKRTKKLPPTWKYESTTASTLVA 151
[Close]
BLAST of EY685604 vs. ExPASy Swiss-Prot
Match: RS132_ORYSJ (40S ribosomal protein S13-2 OS=Oryza sativa subsp. japonica GN=Os08g0117300 PE=1 SV=1)

HSP 1 Score: 157.918 bits (398), Expect = 3.274e-38
Identity = 78/82 (95.12%), Postives = 80/82 (97.56%), Query Frame = 1 
Query:   10 RILRILKAHGLAPEIPEDLYHLIKKAVAIRKHLERNRKDKDSKFRLILVESRIHRLARYYKKTKKLPPVWKYESTTASTLVA 255
            +ILRILKAHGLAPEIPEDLY LIKKAVAIRKHLERNRKDKDSKFRLILVESRIHRLARYYK+TKKLPP WKYESTTASTLVA
Sbjct:   70 KILRILKAHGLAPEIPEDLYFLIKKAVAIRKHLERNRKDKDSKFRLILVESRIHRLARYYKRTKKLPPTWKYESTTASTLVA 151
[Close]
BLAST of EY685604 vs. ExPASy Swiss-Prot
Match: RS131_ORYSJ (40S ribosomal protein S13-1 OS=Oryza sativa subsp. japonica GN=Os08g0117200 PE=2 SV=2)

HSP 1 Score: 157.918 bits (398), Expect = 3.274e-38
Identity = 78/82 (95.12%), Postives = 80/82 (97.56%), Query Frame = 1 
Query:   10 RILRILKAHGLAPEIPEDLYHLIKKAVAIRKHLERNRKDKDSKFRLILVESRIHRLARYYKKTKKLPPVWKYESTTASTLVA 255
            +ILRILKAHGLAPEIPEDLY LIKKAVAIRKHLERNRKDKDSKFRLILVESRIHRLARYYK+TKKLPP WKYESTTASTLVA
Sbjct:   70 KILRILKAHGLAPEIPEDLYFLIKKAVAIRKHLERNRKDKDSKFRLILVESRIHRLARYYKRTKKLPPTWKYESTTASTLVA 151
[Close]
BLAST of EY685604 vs. ExPASy Swiss-Prot
Match: RS13_LUMRU (40S ribosomal protein S13 OS=Lumbricus rubellus GN=RPS13 PE=2 SV=3)

HSP 1 Score: 143.665 bits (361), Expect = 6.390e-34
Identity = 73/82 (89.02%), Postives = 74/82 (90.24%), Query Frame = 1 
Query:   10 RILRILKAHGLAPEIPEDLYHLIKKAVAIRKHLERNRKDKDSKFRLILVESRIHRLARYYKKTKKLPPVWKYESTTASTLVA 255
            +ILRILKA GLAP IPEDLY LIKKAVAIRKHLERNRKDKDSKFRLILVESRIHRLARYYK  K LPPVWKYES TAS LVA
Sbjct:   70 KILRILKAKGLAPTIPEDLYFLIKKAVAIRKHLERNRKDKDSKFRLILVESRIHRLARYYKTRKVLPPVWKYESATASALVA 151
[Close]
BLAST of EY685604 vs. ExPASy Swiss-Prot
Match: RS13_SCHPO (40S ribosomal protein S13 OS=Schizosaccharomyces pombe GN=rps13 PE=1 SV=2)

HSP 1 Score: 141.739 bits (356), Expect = 2.428e-33
Identity = 67/82 (81.71%), Postives = 76/82 (92.68%), Query Frame = 1 
Query:   10 RILRILKAHGLAPEIPEDLYHLIKKAVAIRKHLERNRKDKDSKFRLILVESRIHRLARYYKKTKKLPPVWKYESTTASTLVA 255
            +I+RILKA+GLAPE+PEDLY+LIKKAV++RKHLERNRKDKDSKFRLIL+ESRIHRLARYY+K   LPP WKYES TAS LVA
Sbjct:   70 KIMRILKANGLAPELPEDLYNLIKKAVSVRKHLERNRKDKDSKFRLILIESRIHRLARYYRKVGALPPTWKYESATASALVA 151
[Close]
BLAST of EY685604 vs. ExPASy Swiss-Prot
Match: RS13_XENLA (40S ribosomal protein S13 OS=Xenopus laevis GN=rps13 PE=3 SV=2)

HSP 1 Score: 140.969 bits (354), Expect = 4.142e-33
Identity = 67/82 (81.71%), Postives = 76/82 (92.68%), Query Frame = 1 
Query:   10 RILRILKAHGLAPEIPEDLYHLIKKAVAIRKHLERNRKDKDSKFRLILVESRIHRLARYYKKTKKLPPVWKYESTTASTLVA 255
            +ILRILK+ GLAP++PEDLYHLIKKAVA+RKHLERNRKDKD+KFRLIL+ESRIHRLARYYK  + LPP WKYES+TAS LVA
Sbjct:   70 KILRILKSKGLAPDLPEDLYHLIKKAVAVRKHLERNRKDKDAKFRLILIESRIHRLARYYKTRRVLPPNWKYESSTASALVA 151
The following BLAST results are available for this feature:
BLAST of EY685604 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 74
Match NameE-valueIdentityDescription
RS132_ARATH4.569e-4098.7840S ribosomal protein S13-2 OS=Arabidopsis thalian... [more]
RS131_ARATH4.569e-4098.7840S ribosomal protein S13-1 OS=Arabidopsis thalian... [more]
RS13_SOYBN1.018e-3997.5640S ribosomal protein S13 OS=Glycine max GN=RPS13 ... [more]
RS13_PEA1.125e-3896.3440S ribosomal protein S13 OS=Pisum sativum GN=RPS1... [more]
RS13_MAIZE3.274e-3895.1240S ribosomal protein S13 OS=Zea mays GN=RPS13 PE=... [more]
RS132_ORYSJ3.274e-3895.1240S ribosomal protein S13-2 OS=Oryza sativa subsp.... [more]
RS131_ORYSJ3.274e-3895.1240S ribosomal protein S13-1 OS=Oryza sativa subsp.... [more]
RS13_LUMRU6.390e-3489.0240S ribosomal protein S13 OS=Lumbricus rubellus GN... [more]
RS13_SCHPO2.428e-3381.7140S ribosomal protein S13 OS=Schizosaccharomyces p... [more]
RS13_XENLA4.142e-3381.7140S ribosomal protein S13 OS=Xenopus laevis GN=rps... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C2-003-021-F04-CT.F Sweet orange bark, greenhouse plant Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY685604 ID=EY685604; Name=EY685604; organism=Citrus sinensis; type=EST; length=580bp
CCACGCGTCCGGATTTTGCGTATCCTCAAGGCACATGGACTCGCACCTGA
AATTCCTGAGGATCTGTACCACCTCATCAAGAAGGCTGTTGCTATTAGGA
AGCATTTGGAAAGGAACAGGAAGGACAAGGATTCCAAGTTCCGCTTGATT
CTTGTTGAAAGCAGGATTCACAGGCTTGCTCGCTACTACAAGAAAACCAA
GAAGCTTCCTCCTGTCTGGAAATATGAGTCTACTACCGCCAGCACACTTG
TGGCTTAGGCTAAGCAAGATGCTAGGCGTTGTTTGTGATACCCTTTGTTG
GTATCACAACACTCTTTAAGGAGCCTGATGATTTTATGCTGGATTAGTAT
AAGTTCAGATGTAAGACCTTTATTCATAGTTTTTTTGGAAAGATTTAGTC
TTGGAGAAACAGAAATTTGGAACTTGTTTTTGATTTTGTTGCCTAACGTT
TTGTTTCCTTTCGAAATTTTGTATTTTTGATGCACTTTATATTCGCTAAG
AGATGTTCTGTTTTGAGAGATACATCTGCCGTTGTGCATGAAATAGGTTA
TTACTTTTTAGTAGTANAAAAAAAAAAAAA
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