EY685581

Overview
NameEY685581
Unique NameEY685581
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length888
Libraries
Library NameType
Sweet orange bark, greenhouse plantcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig905 contig Csv1_Contig905:790..1677. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of EY685581 vs. ExPASy Swiss-Prot
Match: IF41_WHEAT (Eukaryotic initiation factor iso-4F subunit p82-34 OS=Triticum aestivum PE=1 SV=2)

HSP 1 Score: 259.996 bits (663), Expect = 1.315e-68
Identity = 141/253 (55.73%), Postives = 166/253 (65.61%), Query Frame = 1
Query:   13 RLIGELLKQKMVPEKIVHHIVQELLENDGKTCPAEENVEAICQFFNTIGKQLDENPKSRRVNDVYFSRLKELTTNSQLVPRLRFMIHDVLDLRANNWVPRREEMKAKTITEIHSEAEKNLGLRPGATAXXXXXXXXXXXXXXXXXFPIARXXXXXXXXXXXXXXXXXXXXXFDTDNWEVPRSRTMPRGDSKSPSQFPGRVQSPLIGKSPSINS------KFLPQGSGGIISGKTSALLQGNPTPSARPSGMAS 753
            RLIGELLKQKMVPEKIVHHIV+ELL +D K CP EE+VEAICQFFNTIGKQLDENPKSRR+ND YF +++EL  N QL PR +FM+ D++DLR+NNWVPRR E+KAKTI+EIH+EAEKNLGLRPGATA                 F + R                      D DNWEV RSR+MPRGD       P R Q PLI K PSIN       + LPQG+G +I GK++ L  G   P +RPS + +
Sbjct:  341 RLIGELLKQKMVPEKIVHHIVKELLGSDKKACPDEEHVEAICQFFNTIGKQLDENPKSRRINDTYFVQIRELVANPQLTPRSKFMVRDLIDLRSNNWVPRRAEIKAKTISEIHTEAEKNLGLRPGATANMRNGRNAPGGPLSPGGFSVNRPGTGGMMPGMPGSRKMPGMPGLDNDNWEVQRSRSMPRGD-------PLRNQGPLINKVPSINKPSPINPRLLPQGTGALI-GKSALL--GTGGPPSRPSSLTA 583          
BLAST of EY685581 vs. ExPASy Swiss-Prot
Match: IF4G1_HUMAN (Eukaryotic translation initiation factor 4 gamma 1 OS=Homo sapiens GN=EIF4G1 PE=1 SV=3)

HSP 1 Score: 99.3673 bits (246), Expect = 2.971e-20
Identity = 52/117 (44.44%), Postives = 74/117 (63.25%), Query Frame = 1
Query:   13 RLIGELLKQKMVPEKIVHHIVQELLENDGKTCPAEENVEAICQFFNTIGKQLDENPKSRRVNDVYFSRLKELTTNSQLVPRLRFMIHDVLDLRANNWVPRREEMKAKTITEIHSEAE 363
            + IGEL K KM+ E I+H  V +LL+N       EE++E +C+   TIGK LD      R+ D YF++++++    +   R+RFM+ DVLDLR +NWVPRR +   KTI +IH EAE
Sbjct:  901 KFIGELFKLKMLTEAIMHDCVVKLLKNHD-----EESLECLCRLLTTIGKDLDFEKAKPRM-DQYFNQMEKIIKEKKTSSRIRFMLQDVLDLRGSNWVPRRGDQGPKTIDQIHKEAE 1011          
BLAST of EY685581 vs. ExPASy Swiss-Prot
Match: IF4G1_RABIT (Eukaryotic translation initiation factor 4 gamma 1 OS=Oryctolagus cuniculus GN=EIF4G1 PE=1 SV=1)

HSP 1 Score: 98.5969 bits (244), Expect = 5.067e-20
Identity = 52/117 (44.44%), Postives = 74/117 (63.25%), Query Frame = 1
Query:   13 RLIGELLKQKMVPEKIVHHIVQELLENDGKTCPAEENVEAICQFFNTIGKQLDENPKSRRVNDVYFSRLKELTTNSQLVPRLRFMIHDVLDLRANNWVPRREEMKAKTITEIHSEAE 363
            + IGEL K KM+ E I+H  V +LL +D      EE++E +C+   TIGK LD      R+ D YF++++++    +   R+RFM+ DVLDLR +NWVPRR +   KTI +IH EAE
Sbjct:  705 KFIGELFKLKMLTEAIMHDCVVKLLRHD------EESLEFLCRLLTTIGKDLDFEKAKPRM-DQYFNQMEKIIKEKKTSSRIRFMLQDVLDLRQSNWVPRRGDQGPKTIDQIHKEAE 814          
BLAST of EY685581 vs. ExPASy Swiss-Prot
Match: IF4G1_MOUSE (Eukaryotic translation initiation factor 4 gamma 1 OS=Mus musculus GN=Eif4g1 PE=1 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 6.618e-20
Identity = 52/117 (44.44%), Postives = 74/117 (63.25%), Query Frame = 1
Query:   13 RLIGELLKQKMVPEKIVHHIVQELLENDGKTCPAEENVEAICQFFNTIGKQLDENPKSRRVNDVYFSRLKELTTNSQLVPRLRFMIHDVLDLRANNWVPRREEMKAKTITEIHSEAE 363
            + IGEL K KM+ E I+H  V +LL+N       EE++E +C+   TIGK LD      R+ D YF++++++    +   R+RFM+ DVLDLR +NWVPRR +   KTI +IH EAE
Sbjct:  904 KFIGELFKLKMLTEAIMHDCVVKLLKNHD-----EESLECLCRLLTTIGKDLDFAKAKPRM-DQYFNQMEKIIKEKKTSSRIRFMLQDVLDLRQSNWVPRRGDQGPKTIDQIHKEAE 1014          
BLAST of EY685581 vs. ExPASy Swiss-Prot
Match: IF4G_SCHPO (Eukaryotic translation initiation factor 4 gamma OS=Schizosaccharomyces pombe GN=tif471 PE=1 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 4.290e-19
Identity = 51/123 (41.46%), Postives = 70/123 (56.91%), Query Frame = 1
Query:   13 RLIGELLKQKMVPEKIVHHIVQELLENDGKTCPAEENVEAICQFFNTIGKQLDENPKSRRVNDVYFSRLKELTTNSQLVPRLRFMIHDVLDLRANNWVPRRE-EMKAKTITEIHSEAEKNLGL 378
            R IGEL K  M+ EKI+H  ++ LL N   T P EE +E++C+   T+G  +D   K     DVY  R++ +T    L  R++FM+ DV+D R N W  + E E   KTI EIH EAE+   L
Sbjct: 1152 RFIGELFKLSMLSEKIMHECIKRLLGN--VTDPEEEEIESLCRLLMTVGVNIDATEKGHAAMDVYVLRMETITKIPNLPSRIKFMLMDVMDSRKNGWAVKNEVEKGPKTIAEIHEEAERKKAL 1272          
BLAST of EY685581 vs. ExPASy Swiss-Prot
Match: IF4G3_MOUSE (Eukaryotic translation initiation factor 4 gamma 3 OS=Mus musculus GN=Eif4g3 PE=1 SV=2)

HSP 1 Score: 92.4337 bits (228), Expect = 3.632e-18
Identity = 49/117 (41.88%), Postives = 72/117 (61.54%), Query Frame = 1
Query:   13 RLIGELLKQKMVPEKIVHHIVQELLENDGKTCPAEENVEAICQFFNTIGKQLDENPKSRRVNDVYFSRLKELTTNSQLVPRLRFMIHDVLDLRANNWVPRREEMKAKTITEIHSEAE 363
            + IGEL K KM+ E I+H  V +LL+N       EE++E +C+   TIGK LD      R+ D YF++++++    +   R+RFM+ DV+DLR  NWV RR +   KTI +IH EA+
Sbjct:  889 KFIGELFKLKMLTEAIMHDCVVKLLKNHD-----EESLECLCRLLTTIGKDLDFEKAKPRM-DQYFNQMEKIVKERKTSSRIRFMLQDVIDLRLCNWVSRRADQGPKTIEQIHKEAK 999          
BLAST of EY685581 vs. ExPASy Swiss-Prot
Match: IF4G3_HUMAN (Eukaryotic translation initiation factor 4 gamma 3 OS=Homo sapiens GN=EIF4G3 PE=1 SV=2)

HSP 1 Score: 92.4337 bits (228), Expect = 3.632e-18
Identity = 49/117 (41.88%), Postives = 72/117 (61.54%), Query Frame = 1
Query:   13 RLIGELLKQKMVPEKIVHHIVQELLENDGKTCPAEENVEAICQFFNTIGKQLDENPKSRRVNDVYFSRLKELTTNSQLVPRLRFMIHDVLDLRANNWVPRREEMKAKTITEIHSEAE 363
            + IGEL K KM+ E I+H  V +LL+N       EE++E +C+   TIGK LD      R+ D YF++++++    +   R+RFM+ DV+DLR  NWV RR +   KTI +IH EA+
Sbjct:  894 KFIGELFKLKMLTEAIMHDCVVKLLKNHD-----EESLECLCRLLTTIGKDLDFEKAKPRM-DQYFNQMEKIVKERKTSSRIRFMLQDVIDLRLCNWVSRRADQGPKTIEQIHKEAK 1004          
BLAST of EY685581 vs. ExPASy Swiss-Prot
Match: IF4G1_ARATH (Eukaryotic translation initiation factor 4G OS=Arabidopsis thaliana GN=EIF4G PE=1 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 3.632e-18
Identity = 49/116 (42.24%), Postives = 74/116 (63.79%), Query Frame = 1
Query:   13 RLIGELLKQKMVPEKIVHHIVQELLENDGKTCPAEENVEAICQFFNTIGKQLDENPKSRRVNDVYFSRLKELTTNSQLVPRLRFMIHDVLDLRANNWVPRREEMKAKTITEIHSEA 360
            RLIGEL K++M+ EKI+H  +Q+LL  +    P EEN+EA+C+  +TIG  +D N K++   D YF ++K L+   +L  R+RFM+ + +DLR N W  R +    K I E+H +A
Sbjct: 1225 RLIGELYKKRMLTEKIMHACIQKLLGYNQD--PHEENIEALCKLMSTIGVMIDHN-KAKFQMDGYFEKMKMLSCKQELSSRVRFMLINAIDLRKNKWQERMKVEGPKKIEEVHRDA 1337          
BLAST of EY685581 vs. ExPASy Swiss-Prot
Match: IF4G_DICDI (Eukaryotic translation initiation factor 4 gamma OS=Dictyostelium discoideum GN=eif4g PE=3 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 2.203e-15
Identity = 45/119 (37.82%), Postives = 74/119 (62.18%), Query Frame = 1
Query:   13 RLIGELLKQKMVPEKIVHHIVQELLENDGKTCPAEENVEAICQFFNTIGKQLDENPKSRRVNDVYFSRLKELTTNSQ-LVPRLRFMIHDVLDLRANNWVPRREEMKAKTITEIHSEAEK 366
            + IGEL KQ+M+ EKIVH I+  L+    +  P+E  +E  C+  + +GK L +N ++ +    YF R+++L  NSQ L  R+RF+I +V+DL+ +NW  + +E  AKT+ E+ +   K
Sbjct:  931 KFIGELFKQQMLSEKIVHGIMVSLIGELQR--PSEIKLECFCKLLSIVGKTLSQNEQASKYLTSYFQRMQQLVDNSQTLSQRIRFLIQNVMDLKNSNWTLKVDE-SAKTLKEVEATQNK 1046          
BLAST of EY685581 vs. ExPASy Swiss-Prot
Match: IF4G2_RABIT (Eukaryotic translation initiation factor 4 gamma 2 OS=Oryctolagus cuniculus GN=EIF4G2 PE=2 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 6.410e-15
Identity = 43/126 (34.13%), Postives = 77/126 (61.11%), Query Frame = 1
Query:   13 RLIGELLKQKMVPEKIVHHIVQELLENDGKTCPAE--ENVEAICQFFNTIGKQLDENPKSRRVNDVYFSRLKELTTNSQLVPRLRFMIHDVLDLRANNWVPRRE--EMKAKTITEIHSEAEKNLGL 378
            + IGEL K  ++ E I+H  ++ LLE   +    +  E++E +CQ   T+G +LD   +++ + D YF+R+  L  + +L  R+RF++ D ++LR ++WVPR+   +   KTI +I  +A K+LG+
Sbjct:  212 KFIGELGKLDLIHESILHKCIKTLLEKKKRVQLQDMGEDLECLCQIMRTVGPRLDHE-RAKSLMDQYFARMCSLMLSKELPARIRFLLQDTVELREHHWVPRKAFLDNGPKTINQIRQDAVKDLGV 336          
The following BLAST results are available for this feature:
BLAST of EY685581 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 15
Match NameE-valueIdentityDescription
IF41_WHEAT1.315e-6855.73Eukaryotic initiation factor iso-4F subunit p82-34... [more]
IF4G1_HUMAN2.971e-2044.44Eukaryotic translation initiation factor 4 gamma 1... [more]
IF4G1_RABIT5.067e-2044.44Eukaryotic translation initiation factor 4 gamma 1... [more]
IF4G1_MOUSE6.618e-2044.44Eukaryotic translation initiation factor 4 gamma 1... [more]
IF4G_SCHPO4.290e-1941.46Eukaryotic translation initiation factor 4 gamma O... [more]
IF4G3_MOUSE3.632e-1841.88Eukaryotic translation initiation factor 4 gamma 3... [more]
IF4G3_HUMAN3.632e-1841.88Eukaryotic translation initiation factor 4 gamma 3... [more]
IF4G1_ARATH3.632e-1842.24Eukaryotic translation initiation factor 4G OS=Ara... [more]
IF4G_DICDI2.203e-1537.82Eukaryotic translation initiation factor 4 gamma O... [more]
IF4G2_RABIT6.410e-1534.13Eukaryotic translation initiation factor 4 gamma 2... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionCS00-C2-003-021-C08-CT.F Sweet orange bark, greenhouse plant Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY685581 ID=EY685581; Name=EY685581; organism=Citrus sinensis; type=EST; length=888bp
CCACGCGTCCGACGCCTTATTGGGGAACTTTTGAAGCAGAAGATGGTGCC
TGAAAAGATTGTCCACCATATTGTTCAGGAGCTTTTGGAGAATGATGGTA
AAACATGCCCAGCTGAGGAGAATGTTGAGGCAATATGTCAATTTTTTAAC
ACCATTGGAAAGCAGCTGGATGAGAATCCTAAATCAAGGCGAGTCAATGA
TGTTTATTTTAGTCGATTGAAGGAATTAACCACAAATTCGCAACTTGTGC
CACGTTTGAGGTTCATGATCCATGATGTTCTTGATCTGCGGGCCAACAAC
TGGGTTCCTCGGCGGGAAGAGATGAAAGCCAAGACCATCACCGAAATTCA
CTCGGAGGCTGAAAAGAATCTTGGTCTGCGTCCTGGTGCAACTGCAATGA
TGAGAAATGGTCGTACAGGGGCTACTGGAGGGATGGGTCCTGGAGGCTTT
CCCATTGCACGGCCTGGTACTGGGGGCATGATGCCTGGAATGCCTGGAAC
CCAGAAAATGCCTGGAATGCCTGGGTTTGATACTGACAATTGGGAGGTTC
CTCGTTCCCGGACAATGCCAAGAGGTGATAGCAAAAGTCCGTCTCAATTT
CCAGGTCGTGTGCAGTCACCTTTGATCGGAAAATCACCATCAATCAATTC
AAAATTTTTGCCTCAAGGAAGTGGCGGGATCATATCTGGAAAAACAAGTG
CCTTGTTGCAGGGTAATCCTACTCCTTCCGCCCGTCCTTCTGGAATGGCT
TCAAGGGTTGGAAACTTTAACTCAATATACTAAACCTGGTGCTCCTGGTG
CATCAATAGTTGCTTCCTCCCAAAAAACCCTCCAGTTCCTGGCCACAAAA
TAAAATCTTGCTTAATCTCCCCAAAAAACCCTATTCCC
back to top