EY685573

Overview
NameEY685573
Unique NameEY685573
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length657
Libraries
Library NameType
Sweet orange bark, greenhouse plantcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2620 contig Csv1_Contig2620:1210..1866. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
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BLAST of EY685573 vs. ExPASy Swiss-Prot
Match: IQD14_ARATH (Protein IQ-DOMAIN 14 OS=Arabidopsis thaliana GN=IQD14 PE=1 SV=1)

HSP 1 Score: 118.242 bits (295), Expect = 3.686e-26
Identity = 71/133 (53.38%), Postives = 86/133 (64.66%), Query Frame = 1 
Query:   31 SIYSRARVSGAASPFDVPLRDDDSLMSCPPFSVPNYMTPTVSAKAKVRPNSNPKERFPGTPSSESQRRLSFPLTQGIGSFKWXXXXXXXXXXXXXXQR------VLDKNQSLQSIGNLSVDSTVSMPATVGRK 411
            S YSR R+ G  SPF    +DDDSL SCPPF  P+YM PTVSAKAKVRPNSNPKER  GTP SE +RR+S+P TQ   +F+W                      VL+K+++L+S+GNLS+ ST SM  TVGRK
Sbjct:  539 SRYSRGRLRGQDSPF----KDDDSLTSCPPF--PSYMAPTVSAKAKVRPNSNPKERVMGTPVSE-KRRMSYPPTQ--DTFRWNKGSLVMSNSSSHRGPGSPGGVVLEKHKTLKSVGNLSIGSTASMATTVGRK 662
The following BLAST results are available for this feature:
BLAST of EY685573 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
IQD14_ARATH3.686e-2653.38Protein IQ-DOMAIN 14 OS=Arabidopsis thaliana GN=IQ... [more]
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Properties
Property NameValue
Genbank descriptionCS00-C2-003-021-B12-CT.F Sweet orange bark, greenhouse plant Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY685573 ID=EY685573; Name=EY685573; organism=Citrus sinensis; type=EST; length=657bp
CCACGCGTCCGACAAGGCAGTCCAAGCCTGTCAATATACTCGAGAGCAAG
AGTTAGTGGAGCTGCTTCTCCTTTTGACGTACCATTGAGGGACGATGACA
GCCTCATGAGCTGCCCGCCATTTTCTGTTCCAAACTATATGACACCGACC
GTTTCGGCAAAAGCAAAAGTGAGACCTAATAGTAATCCTAAGGAGAGGTT
CCCAGGAACTCCAAGCAGTGAATCACAAAGAAGGCTTTCTTTCCCTTTAA
CACAAGGCATTGGCTCTTTCAAGTGGAAAAAAGGTTCATTGCTCTCTACT
AGCAAGGATTCCAGCTCTCAAAGGGTTTTAGACAAGAATCAATCTCTACA
ATCTATAGGAAATTTGAGTGTGGATTCAACTGTTTCCATGCCGGCTACTG
TCGGTCGGAAGCCGTTTAACCGATTCGTGTGATTTTTTTTTCCCATAATT
TTTTAACTTTTTTCTTTGATTTCTTGGTGTTATTTGATTGAGTGTATGAT
TATATATATTTGGGTTTTTTTTCCCCTTATAAAAGATACTGATGTAAGAC
AATAAACATAGGAAATGATGTATTGGGTGTAACGGGATTGGTGTTTCTTT
TGAAGATATCATAATACTTAATTTTTTTCTTTTAAAAAAAAAAAAAAAAA
AGGCGGG
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