EY685549

Overview
NameEY685549
Unique NameEY685549
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length895
Libraries
Library NameType
Sweet orange bark, greenhouse plantcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY685549 vs. ExPASy Swiss-Prot
Match: RL172_ARATH (60S ribosomal protein L17-2 OS=Arabidopsis thaliana GN=RPL17B PE=2 SV=2)

HSP 1 Score: 273.863 bits (699), Expect = 8.899e-73
Identity = 134/166 (80.72%), Postives = 145/166 (87.35%), Query Frame = 2
Query:   14 DNPTKSCKARGSDLRVHFKNTREAAHALRKLSLTKAKRYLEDVMAHKQAIPFTRFCRGVGRTAQAKNRNPNGQGRWPVKSAKFILDLLKNAESNAEVKGLDVDALYISHIQVNQAQKQRRRTYRAHGRINPYMSSPCHIELTLSXXXXXXXXXXXTQLASRKPRTA 511
            DN TKSCKARGSDLRVHFKNTRE AHA+RKL L KAKRYLEDV+AHKQAIPFTRFCRGVGRTAQAKNR+ NGQGRWP KSA+F+LDLLKNAESNAEVKGLDVDAL+ISHIQVNQA KQRRRTYRAHGRINPYMS+PCHIEL LS           TQLA++  ++A
Sbjct:    9 DNQTKSCKARGSDLRVHFKNTRETAHAIRKLPLIKAKRYLEDVIAHKQAIPFTRFCRGVGRTAQAKNRHSNGQGRWPAKSAQFVLDLLKNAESNAEVKGLDVDALFISHIQVNQAAKQRRRTYRAHGRINPYMSNPCHIELILSEKEEPVKKEPETQLAAKSKKSA 174          
BLAST of EY685549 vs. ExPASy Swiss-Prot
Match: RL171_ARATH (60S ribosomal protein L17-1 OS=Arabidopsis thaliana GN=RPL17A PE=1 SV=1)

HSP 1 Score: 271.552 bits (693), Expect = 4.416e-72
Identity = 133/167 (79.64%), Postives = 145/167 (86.83%), Query Frame = 2
Query:   14 DNPTKSCKARGSDLRVHFKNTREAAHALRKLSLTKAKRYLEDVMAHKQAIPFTRFCRGVGRTAQAKNRNPNGQGRWPVKSAKFILDLLKNAESNAEVKGLDVDALYISHIQVNQAQKQRRRTYRAHGRINPYMSSPCHIELTLSXXXXXXXXXXXTQLASRKPRTAT 514
            DN TKSCKARG+DLRVHFKNTRE AHA+RKL L KAKRYLEDV+AHKQAIPFTRFCRGVGRTAQAKNR+ NGQGRWP KSA+F+LDLLKNAESNAEVKGLDVDAL+ISHIQVNQA KQRRRTYRAHGRINPYMS+PCHIEL LS           TQLA++  + A+
Sbjct:    9 DNITKSCKARGADLRVHFKNTRETAHAIRKLPLNKAKRYLEDVIAHKQAIPFTRFCRGVGRTAQAKNRHSNGQGRWPAKSAQFVLDLLKNAESNAEVKGLDVDALFISHIQVNQAAKQRRRTYRAHGRINPYMSNPCHIELILSEKEEPVKKEPETQLAAKSKKGAS 175          
BLAST of EY685549 vs. ExPASy Swiss-Prot
Match: RL171_HORVU (60S ribosomal protein L17-1 OS=Hordeum vulgare PE=2 SV=1)

HSP 1 Score: 261.151 bits (666), Expect = 5.969e-69
Identity = 126/143 (88.11%), Postives = 131/143 (91.61%), Query Frame = 2
Query:   17 NPTKSCKARGSDLRVHFKNTREAAHALRKLSLTKAKRYLEDVMAHKQAIPFTRFCRGVGRTAQAKNRNPNGQGRWPVKSAKFILDLLKNAESNAEVKGLDVDALYISHIQVNQAQKQRRRTYRAHGRINPYMSSPCHIELTLS 445
            NPTKS KA G DLRVHFKNTRE A ALRK+ L KAKRYLEDV+AHKQAIPF R+CRGVGRTAQ KNR PNGQGRWP KSAKF+LDLLKNAESNAEVKGLDVDALYISHIQVNQAQKQRRRTYRAHGRINPYMS+PCHIEL LS
Sbjct:   10 NPTKSAKAMGRDLRVHFKNTRETAFALRKMPLNKAKRYLEDVLAHKQAIPFRRYCRGVGRTAQVKNRQPNGQGRWPAKSAKFVLDLLKNAESNAEVKGLDVDALYISHIQVNQAQKQRRRTYRAHGRINPYMSNPCHIELILS 152          
BLAST of EY685549 vs. ExPASy Swiss-Prot
Match: RL17_MAIZE (60S ribosomal protein L17 OS=Zea mays GN=RPL17 PE=2 SV=1)

HSP 1 Score: 256.529 bits (654), Expect = 1.470e-67
Identity = 128/161 (79.50%), Postives = 137/161 (85.09%), Query Frame = 2
Query:   17 NPTKSCKARGSDLRVHFKNTREAAHALRKLSLTKAKRYLEDVMAHKQAIPFTRFCRGVGRTAQAKNRNPNGQGRWPVKSAKFILDLLKNAESNAEVKGLDVDALYISHIQVNQAQKQRRRTYRAHGRINPYMSSPCHIELTLSXXXXXXXXXXXTQLASRK 499
            NPTKS KA G DLRVHFKNTRE A ALRKL LTKAKRYLEDV+AHKQAIPF R+C GVGRTAQAK+R+ NGQGRWPVKSA+FILDLLKNAESNA+VKGLDVD LY+SHIQVNQAQKQRRRTYRAHGRINPYMSSPCHIEL LS             +A+RK
Sbjct:   10 NPTKSAKAMGRDLRVHFKNTRETAFALRKLPLTKAKRYLEDVIAHKQAIPFRRYCGGVGRTAQAKSRHSNGQGRWPVKSARFILDLLKNAESNADVKGLDVDNLYVSHIQVNQAQKQRRRTYRAHGRINPYMSSPCHIELILSEKEEPVKKEADNIVAARK 170          
BLAST of EY685549 vs. ExPASy Swiss-Prot
Match: RL172_HORVU (60S ribosomal protein L17-2 OS=Hordeum vulgare PE=2 SV=1)

HSP 1 Score: 255.373 bits (651), Expect = 3.275e-67
Identity = 126/161 (78.26%), Postives = 134/161 (83.23%), Query Frame = 2
Query:   17 NPTKSCKARGSDLRVHFKNTREAAHALRKLSLTKAKRYLEDVMAHKQAIPFTRFCRGVGRTAQAKNRNPNGQGRWPVKSAKFILDLLKNAESNAEVKGLDVDALYISHIQVNQAQKQRRRTYRAHGRINPYMSSPCHIELTLSXXXXXXXXXXXTQLASRK 499
            NPTKS KA G DLRVHFKNTRE A ALR++ L KAKRYLEDV+AHKQAIPF R+CRGVGRTAQ KNR PNGQGRWP KSA+F+LDLLKNAESNAEVKGLDVD LYISHIQVNQAQKQRRRTYRAHGRINPYMS+PCHIEL LS             +A RK
Sbjct:   10 NPTKSAKACGKDLRVHFKNTRETAFALRRMPLGKAKRYLEDVLAHKQAIPFRRYCRGVGRTAQVKNRQPNGQGRWPAKSAQFVLDLLKNAESNAEVKGLDVDNLYISHIQVNQAQKQRRRTYRAHGRINPYMSNPCHIELILSEKEEPVKKEADNVVAPRK 170          
BLAST of EY685549 vs. ExPASy Swiss-Prot
Match: RL17_PODCA (60S ribosomal protein L17 OS=Podocoryne carnea GN=RPL17 PE=2 SV=1)

HSP 1 Score: 211.075 bits (536), Expect = 7.084e-54
Identity = 105/144 (72.92%), Postives = 120/144 (83.33%), Query Frame = 2
Query:   14 DNPTKSCKARGSDLRVHFKNTREAAHALRKLSLTKAKRYLEDVMAHKQAIPFTRFCRGVGRTAQAKNRNPNGQGRWPVKSAKFILDLLKNAESNAEVKGLDVDALYISHIQVNQAQKQRRRTYRAHGRINPYMSSPCHIELTLS 445
            +NP KSCKARGS LRVHFKNTRE A A++K+ + KA RYL+DV+A KQ IPF RFC GVGR AQAK    + QGRWPVKSA+F+L LLKNAESNA+VKGLDVD+L I HIQVN+A   RRRTYRAHGRINPYMSSPCHIE+ +S
Sbjct:    9 ENPIKSCKARGSYLRVHFKNTRETAQAIKKMHIRKAYRYLKDVIAKKQIIPFRRFCGGVGRKAQAKAFK-HTQGRWPVKSAEFLLGLLKNAESNADVKGLDVDSLVIDHIQVNRAPYMRRRTYRAHGRINPYMSSPCHIEMIVS 151          
BLAST of EY685549 vs. ExPASy Swiss-Prot
Match: RL17_SUBDO (60S ribosomal protein L17 OS=Suberites domuncula GN=RPL17 PE=2 SV=1)

HSP 1 Score: 202.601 bits (514), Expect = 2.519e-51
Identity = 100/144 (69.44%), Postives = 114/144 (79.17%), Query Frame = 2
Query:   14 DNPTKSCKARGSDLRVHFKNTREAAHALRKLSLTKAKRYLEDVMAHKQAIPFTRFCRGVGRTAQAKN-RNPNGQGRWPVKSAKFILDLLKNAESNAEVKGLDVDALYISHIQVNQAQKQRRRTYRAHGRINPYMSSPCHIELTL 442
            +NP KSCKARG DLRVHFKNTRE A A++ + L KA RYL DV+  KQ IPF RF  GVGR AQAKN + P  QGRWP KSA+F++ LL+NAESNAEVK L+ DAL I HIQVN+A   RRRTYRAHGRINPYM+SPCHIE+ L
Sbjct:    9 ENPAKSCKARGEDLRVHFKNTRETAQAIKGMHLKKALRYLNDVIEKKQIIPFRRFSGGVGRKAQAKNFKTPGSQGRWPKKSAQFLIQLLRNAESNAEVKMLNTDALVIDHIQVNRAAHLRRRTYRAHGRINPYMTSPCHIEMFL 152          
BLAST of EY685549 vs. ExPASy Swiss-Prot
Match: RL17_HUMAN (60S ribosomal protein L17 OS=Homo sapiens GN=RPL17 PE=1 SV=3)

HSP 1 Score: 201.445 bits (511), Expect = 5.613e-51
Identity = 98/144 (68.06%), Postives = 117/144 (81.25%), Query Frame = 2
Query:   14 DNPTKSCKARGSDLRVHFKNTREAAHALRKLSLTKAKRYLEDVMAHKQAIPFTRFCRGVGRTAQAKNRNPNGQGRWPVKSAKFILDLLKNAESNAEVKGLDVDALYISHIQVNQAQKQRRRTYRAHGRINPYMSSPCHIELTLS 445
            +NPTKSCK+RGS+LRVHFKNTRE A A++ + + KA +YL+DV   KQ +PF R+  GVGR AQAK      QGRWP KSA+F+L +LKNAESNAE+KGLDVD+L I HIQVN+A K RRRTYRAHGRINPYMSSPCHIE+ L+
Sbjct:    9 ENPTKSCKSRGSNLRVHFKNTRETAQAIKGMHIRKATKYLKDVTLQKQCVPFRRYNGGVGRCAQAKQWGWT-QGRWPKKSAEFLLHMLKNAESNAELKGLDVDSLVIEHIQVNKAPKMRRRTYRAHGRINPYMSSPCHIEMILT 151          
BLAST of EY685549 vs. ExPASy Swiss-Prot
Match: RL17_FELCA (60S ribosomal protein L17 OS=Felis catus GN=RPL17 PE=2 SV=3)

HSP 1 Score: 201.445 bits (511), Expect = 5.613e-51
Identity = 98/144 (68.06%), Postives = 117/144 (81.25%), Query Frame = 2
Query:   14 DNPTKSCKARGSDLRVHFKNTREAAHALRKLSLTKAKRYLEDVMAHKQAIPFTRFCRGVGRTAQAKNRNPNGQGRWPVKSAKFILDLLKNAESNAEVKGLDVDALYISHIQVNQAQKQRRRTYRAHGRINPYMSSPCHIELTLS 445
            +NPTKSCK+RGS+LRVHFKNTRE A A++ + + KA +YL+DV   KQ +PF R+  GVGR AQAK      QGRWP KSA+F+L +LKNAESNAE+KGLDVD+L I HIQVN+A K RRRTYRAHGRINPYMSSPCHIE+ L+
Sbjct:    9 ENPTKSCKSRGSNLRVHFKNTRETAQAIKGMHIRKATKYLKDVTLQKQCVPFRRYNGGVGRCAQAKQWGWT-QGRWPKKSAEFLLHMLKNAESNAELKGLDVDSLVIEHIQVNKAPKMRRRTYRAHGRINPYMSSPCHIEMILT 151          
BLAST of EY685549 vs. ExPASy Swiss-Prot
Match: RL17_RAT (60S ribosomal protein L17 OS=Rattus norvegicus GN=Rpl17 PE=2 SV=3)

HSP 1 Score: 201.06 bits (510), Expect = 7.330e-51
Identity = 98/144 (68.06%), Postives = 117/144 (81.25%), Query Frame = 2
Query:   14 DNPTKSCKARGSDLRVHFKNTREAAHALRKLSLTKAKRYLEDVMAHKQAIPFTRFCRGVGRTAQAKNRNPNGQGRWPVKSAKFILDLLKNAESNAEVKGLDVDALYISHIQVNQAQKQRRRTYRAHGRINPYMSSPCHIELTLS 445
            +NPTKSCK+RGS+LRVHFKNTRE A A++ + + KA +YL+DV   KQ +PF R+  GVGR AQAK      QGRWP KSA+F+L +LKNAESNAE+KGLDVD+L I HIQVN+A K RRRTYRAHGRINPYMSSPCHIE+ L+
Sbjct:    9 ENPTKSCKSRGSNLRVHFKNTRETAQAIKGMHIRKATKYLKDVTLKKQCVPFRRYNGGVGRCAQAKQWGWT-QGRWPKKSAEFLLHMLKNAESNAELKGLDVDSLVIEHIQVNKAPKMRRRTYRAHGRINPYMSSPCHIEMILT 151          
The following BLAST results are available for this feature:
BLAST of EY685549 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 89
Match NameE-valueIdentityDescription
RL172_ARATH8.899e-7380.7260S ribosomal protein L17-2 OS=Arabidopsis thalian... [more]
RL171_ARATH4.416e-7279.6460S ribosomal protein L17-1 OS=Arabidopsis thalian... [more]
RL171_HORVU5.969e-6988.1160S ribosomal protein L17-1 OS=Hordeum vulgare PE=... [more]
RL17_MAIZE1.470e-6779.5060S ribosomal protein L17 OS=Zea mays GN=RPL17 PE=... [more]
RL172_HORVU3.275e-6778.2660S ribosomal protein L17-2 OS=Hordeum vulgare PE=... [more]
RL17_PODCA7.084e-5472.9260S ribosomal protein L17 OS=Podocoryne carnea GN=... [more]
RL17_SUBDO2.519e-5169.4460S ribosomal protein L17 OS=Suberites domuncula G... [more]
RL17_HUMAN5.613e-5168.0660S ribosomal protein L17 OS=Homo sapiens GN=RPL17... [more]
RL17_FELCA5.613e-5168.0660S ribosomal protein L17 OS=Felis catus GN=RPL17 ... [more]
RL17_RAT7.330e-5168.0660S ribosomal protein L17 OS=Rattus norvegicus GN=... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionCS00-C2-003-020-H03-CT.F Sweet orange bark, greenhouse plant Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY685549 ID=EY685549; Name=EY685549; organism=Citrus sinensis; type=EST; length=895bp
CCACGCGTCCGCGGATAATCCCACCAAGTCATGCAAAGCTAGAGGCTCTG
ATCTCCGTGTTCACTTCAAGAACACTAGGGAGGCAGCCCATGCTCTTAGA
AAGCTGTCTTTGACCAAGGCTAAAAGGTACTTGGAGGATGTTATGGCTCA
CAAGCAAGCCATACCATTCACCCGCTTCTGTCGCGGTGTTGGGCGAACTG
CACAGGCTAAAAACCGTAATCCAAATGGTCAAGGTCGCTGGCCGGTTAAA
TCTGCAAAGTTCATTCTGGATTTACTCAAGAATGCTGAGAGTAATGCAGA
GGTGAAAGGCTTAGATGTGGACGCGCTTTACATTTCTCACATCCAAGTGA
ATCAAGCCCAGAAGCAGAGGCGTCGGACTTATCGTGCACATGGAAGGATT
AACCCATACATGTCTTCCCCATGTCATATTGAGTTGACACTCTCAGAAAA
GGAGGAACCTGTGAAGAAAGAGCCGGAGACCCAGTTGGCTTCCAGGAAAC
CGAGGACAGCTACATAGTGGTGCCTTATCTTGAATGTTGGGAGTCCTGAG
TTGATTTCTCTTTTTTCCCCCCTTTGTACTACCATGACAACATACAATTT
TGTTTACAAGATACTTGTTCCCTGAAGACTTCTGTTGGGTCAGTATTTAA
TTTTATTCTGTCTTGCCATGGCTCGCTTACCATGATAGTTCTCAATGGAA
TTTTTAATGGGGTTTTGGTTAGGGTTGACTTTCCCCCAACAATGCTTGCT
TAGGCCTTTCCAATGATTTACTACAGGTCAAAATGGGGCCATTACGATGT
AGCAGAGGCGGTAACTTTATCAGATTTAAAATGGACCAGAAGAAAGTACG
ATATAACAGAACAGAAAAACACGCCCGGGCGATATCAAACAAACC
back to top