EY685491

Overview
NameEY685491
Unique NameEY685491
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length848
Libraries
Library NameType
Sweet orange bark, greenhouse plantcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
EY685491_ssr723 microsatellite EY685491_ssr723:723..734. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
BLAST of EY685491 vs. ExPASy Swiss-Prot
Match: ARGJ_SYNPX (Arginine biosynthesis bifunctional protein argJ OS=Synechococcus sp. (strain WH8102) GN=argJ PE=3 SV=1)

HSP 1 Score: 105.916 bits (263), Expect = 2.927e-22
Identity = 54/91 (59.34%), Postives = 65/91 (71.43%), Query Frame = 3
Query:  315 DSAAVAITTTDLVSKSVAVESQVGGTYIRVGGMAKGSGMIHPNMATMLGXXXXXXXXXXXXWKKMVKVAVNRSFHPITVDGDTKIYDTVTA 587
            ++AA AI TTDLVSK VA+E+++GG  +R+GG+AKGSGMIHP+MATMLG            WK MV  AV RSF+ ITVDGDT   DTV A
Sbjct:  157 EAAATAILTTDLVSKQVALEAELGGRRVRIGGIAKGSGMIHPDMATMLGFFSCDAGLDPSIWKAMVGQAVQRSFNAITVDGDTSTNDTVLA 247          
BLAST of EY685491 vs. ExPASy Swiss-Prot
Match: ARGJ1_ANASP (Arginine biosynthesis bifunctional protein argJ 1 OS=Anabaena sp. (strain PCC 7120) GN=argJ1 PE=3 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 1.360e-19
Identity = 48/92 (52.17%), Postives = 65/92 (70.65%), Query Frame = 3
Query:  312 ADSAAVAITTTDLVSKSVAVESQVGGTYIRVGGMAKGSGMIHPNMATMLGXXXXXXXXXXXXWKKMVKVAVNRSFHPITVDGDTKIYDTVTA 587
            +D+AA AI TTDLV+KS+A+E+ +G   +R+GG+AKGSGMIHPNMATML             W++M+  A +RSF+ ITVDGDT   D++ A
Sbjct:  145 SDAAAGAIITTDLVTKSIALETTIGDRPVRIGGIAKGSGMIHPNMATMLAFVTCDAAVSSHLWQQMLTRAADRSFNSITVDGDTSTNDSLIA 236          
BLAST of EY685491 vs. ExPASy Swiss-Prot
Match: ARGJ_SYNP6 (Arginine biosynthesis bifunctional protein argJ OS=Synechococcus sp. (strain ATCC 27144 / PCC 6301 / SAUG 1402/1) GN=argJ PE=3 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 1.503e-18
Identity = 48/90 (53.33%), Postives = 61/90 (67.78%), Query Frame = 3
Query:  318 SAAVAITTTDLVSKSVAVESQVGGTYIRVGGMAKGSGMIHPNMATMLGXXXXXXXXXXXXWKKMVKVAVNRSFHPITVDGDTKIYDTVTA 587
            +AA AI TTDLV+K +A+E  +G   +R+GG+AKGSGMIHPNMATML             W++M+  AV+RSF+ ITVDGDT   D V A
Sbjct:  149 AAAQAILTTDLVAKQIALELPLGDRTVRIGGIAKGSGMIHPNMATMLSFITCDAAVSPQLWQEMLSRAVDRSFNQITVDGDTSTNDCVFA 238          
BLAST of EY685491 vs. ExPASy Swiss-Prot
Match: ARGJ_THEEB (Arginine biosynthesis bifunctional protein argJ OS=Thermosynechococcus elongatus (strain BP-1) GN=argJ PE=3 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 2.564e-18
Identity = 48/91 (52.75%), Postives = 62/91 (68.13%), Query Frame = 3
Query:  315 DSAAVAITTTDLVSKSVAVESQVGGTYIRVGGMAKGSGMIHPNMATMLGXXXXXXXXXXXXWKKMVKVAVNRSFHPITVDGDTKIYDTVTA 587
            ++AA AI TTDLV K +A+E++  G  IR+GGMAKGSGMIHP MATML             W++M++ A +RSF+ ITVDGDT   D+V A
Sbjct:  146 EAAARAIMTTDLVPKQIALEAEWEGQTIRIGGMAKGSGMIHPKMATMLAFITCDAAVSPHLWQEMLQRACDRSFNQITVDGDTSTNDSVIA 236          
BLAST of EY685491 vs. ExPASy Swiss-Prot
Match: ARGJ_PROMM (Arginine biosynthesis bifunctional protein argJ OS=Prochlorococcus marinus (strain MIT 9313) GN=argJ PE=3 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 3.349e-18
Identity = 47/89 (52.81%), Postives = 60/89 (67.42%), Query Frame = 3
Query:  321 AAVAITTTDLVSKSVAVESQVGGTYIRVGGMAKGSGMIHPNMATMLGXXXXXXXXXXXXWKKMVKVAVNRSFHPITVDGDTKIYDTVTA 587
            AA AI TTDLV K  A+E+++GG  +R+GGMAKGSGMIHP+MATMLG            W+ M+K  V+ SF+ +TVDGDT   D+  A
Sbjct:  168 AAGAILTTDLVEKQFALEAELGGRSVRIGGMAKGSGMIHPDMATMLGYLSCDVGVEVDAWQAMLKRVVDCSFNAMTVDGDTSTNDSCLA 256          
BLAST of EY685491 vs. ExPASy Swiss-Prot
Match: ARGJ_GLOVI (Arginine biosynthesis bifunctional protein argJ OS=Gloeobacter violaceus GN=argJ PE=3 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 4.374e-18
Identity = 47/92 (51.09%), Postives = 61/92 (66.30%), Query Frame = 3
Query:  312 ADSAAVAITTTDLVSKSVAVESQVGGTYIRVGGMAKGSGMIHPNMATMLGXXXXXXXXXXXXWKKMVKVAVNRSFHPITVDGDTKIYDTVTA 587
            +D+AA AI TTDLV+KS AV + +GG  + VGG+AKGSGMIHP MAT+L             W+++V  A +RSF+ ITVDGDT   D + A
Sbjct:  145 SDAAAEAILTTDLVAKSCAVRALIGGKTVHVGGIAKGSGMIHPQMATLLAFITSDCSVDIDLWRQIVARATDRSFNQITVDGDTSTNDMLLA 236          
BLAST of EY685491 vs. ExPASy Swiss-Prot
Match: ARGJ_SYNY3 (Arginine biosynthesis bifunctional protein argJ OS=Synechocystis sp. (strain PCC 6803) GN=argJ PE=3 SV=2)

HSP 1 Score: 91.6633 bits (226), Expect = 5.713e-18
Identity = 44/91 (48.35%), Postives = 62/91 (68.13%), Query Frame = 3
Query:  315 DSAAVAITTTDLVSKSVAVESQVGGTYIRVGGMAKGSGMIHPNMATMLGXXXXXXXXXXXXWKKMVKVAVNRSFHPITVDGDTKIYDTVTA 587
            D AA AI TTDLV K++A+E+++ G  +R+GG+AKGSGMIHPNMATML             W++M+  A  ++F+ +TVDGDT   D++ A
Sbjct:  146 DKAARAIMTTDLVPKTIALETEIDGRPVRMGGIAKGSGMIHPNMATMLAFVTCDAAVSTALWQQMLSRATQKTFNQVTVDGDTSTNDSLFA 236          
BLAST of EY685491 vs. ExPASy Swiss-Prot
Match: ARGJ_PROMA (Arginine biosynthesis bifunctional protein argJ OS=Prochlorococcus marinus GN=argJ PE=3 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 1.273e-17
Identity = 46/89 (51.69%), Postives = 56/89 (62.92%), Query Frame = 3
Query:  321 AAVAITTTDLVSKSVAVESQVGGTYIRVGGMAKGSGMIHPNMATMLGXXXXXXXXXXXXWKKMVKVAVNRSFHPITVDGDTKIYDTVTA 587
            AA AI TTDL+ K +A+E  +G   IR+GGMAKGSGMIHPNMATMLG            W  M+   V+ SF+ I+VDGDT   D+  A
Sbjct:  154 AAKAILTTDLIEKEIAIEGYLGDRLIRIGGMAKGSGMIHPNMATMLGFLTCDAGLPKDVWDAMIDRVVDCSFNAISVDGDTSTNDSFLA 242          
BLAST of EY685491 vs. ExPASy Swiss-Prot
Match: ARGJ_PROMT (Arginine biosynthesis bifunctional protein argJ OS=Prochlorococcus marinus (strain NATL2A) GN=argJ PE=3 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 5.347e-16
Identity = 45/89 (50.56%), Postives = 53/89 (59.55%), Query Frame = 3
Query:  321 AAVAITTTDLVSKSVAVESQVGGTYIRVGGMAKGSGMIHPNMATMLGXXXXXXXXXXXXWKKMVKVAVNRSFHPITVDGDTKIYDTVTA 587
            AA AI TTDL  K +A ++ +GG  I +GGMAKGSGMIHP+MATML             W  M+K     SF+ ITVDGDT   DT  A
Sbjct:  161 AANAILTTDLQVKQIAYQAVLGGRRISIGGMAKGSGMIHPSMATMLSYLTCDVGVDHVLWSDMIKRVAESSFNSITVDGDTSTNDTFLA 249          
BLAST of EY685491 vs. ExPASy Swiss-Prot
Match: ARGJ_PROMP (Arginine biosynthesis bifunctional protein argJ OS=Prochlorococcus marinus subsp. pastoris (strain CCMP1986 / MED4) GN=argJ PE=3 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 9.121e-16
Identity = 40/86 (46.51%), Postives = 55/86 (63.95%), Query Frame = 3
Query:  318 SAAVAITTTDLVSKSVAVESQVGGTYIRVGGMAKGSGMIHPNMATMLGXXXXXXXXXXXXWKKMVKVAVNRSFHPITVDGDTKIYD 575
            +AA AI TTDLV K + +E+ + G  +++ G AKGSGMI+PNMATML             W KM+ +AV +SF+ I+VDG+T   D
Sbjct:  142 NAAEAILTTDLVDKKITIETFIEGRKVKISGFAKGSGMIYPNMATMLAFLTCDVGVDKEEWDKMISIAVKKSFNAISVDGETSTND 227          
The following BLAST results are available for this feature:
BLAST of EY685491 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 65
Match NameE-valueIdentityDescription
ARGJ_SYNPX2.927e-2259.34Arginine biosynthesis bifunctional protein argJ OS... [more]
ARGJ1_ANASP1.360e-1952.17Arginine biosynthesis bifunctional protein argJ 1 ... [more]
ARGJ_SYNP61.503e-1853.33Arginine biosynthesis bifunctional protein argJ OS... [more]
ARGJ_THEEB2.564e-1852.75Arginine biosynthesis bifunctional protein argJ OS... [more]
ARGJ_PROMM3.349e-1852.81Arginine biosynthesis bifunctional protein argJ OS... [more]
ARGJ_GLOVI4.374e-1851.09Arginine biosynthesis bifunctional protein argJ OS... [more]
ARGJ_SYNY35.713e-1848.35Arginine biosynthesis bifunctional protein argJ OS... [more]
ARGJ_PROMA1.273e-1751.69Arginine biosynthesis bifunctional protein argJ OS... [more]
ARGJ_PROMT5.347e-1650.56Arginine biosynthesis bifunctional protein argJ OS... [more]
ARGJ_PROMP9.121e-1646.51Arginine biosynthesis bifunctional protein argJ OS... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C2-003-019-H11-CT.F Sweet orange bark, greenhouse plant Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY685491 ID=EY685491; Name=EY685491; organism=Citrus sinensis; type=EST; length=848bp
CCACGCGTCCGCCCACGCGTCCGCTCGTTGCCAAAACTAGTCAATTCACT
TTCATCTTCAACTGAGGGGTATTTGCGTCATTCCACTCTACCTTGGCTAA
ATGGCGTACTTTCATTTTTGTTTAGGGACAGTCTTGCTTCTTATTCACCC
AAGATCTTACTCTTTGTGTTTTAATTGCTTTTGATTATTGTTGTTGTCGT
TATTGTTATTGTTATCATTTTCTTTTTTGCAAATAATCTAGGTATTTTTG
TCTCCTTACTTCTCCTTATCTGTCTAGACATTCCTGAATCTCTTATCAGT
GACTGTGCAGGGCAGATTCTGCAGCAGTAGCTATCACAACGACTGACCTT
GTGAGCAAGAGTGTGGCAGTTGAGTCTCAGGTTGGAGGGACGTATATAAG
AGTTGGGGGAATGGCGAAGGGTTCTGGGATGATTCACCCAAATATGGCTA
CCATGCTTGGTGTAGTAACAACTGATGCTTCTGTTGACTCTGACGTATGG
AAAAAGATGGTAAAGGTTGCTGTAAACCGAAGCTTTCACCCAATAACTGT
AGATGGAGATACTAAGATCTATGATACTGTAACAGCCTAGCCTAGACGAG
TCATCTAAATGAGCCAGGATATTTTCTGCTCGCTGAAGGCACAACAAAGG
ACCTCACCCATGCCATGACTGCGCAACCCCCAGCCTTCCCCACTCTATCC
TGCAACCCCCGCAACGCACAAGTCCCTCCCTCCCGCCCCCAGGCCCGACC
GCCAGAGTGCGATTACATGTGCCAAGCAAAACGCATAGTAGCCCATCCCC
CCAACAAGCAAGAAACGGATCATCCCACCGCGACACACCAGGCAAACT
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