EY685485

Overview
NameEY685485
Unique NameEY685485
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length906
Libraries
Library NameType
Sweet orange bark, greenhouse plantcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig8847 contig Csv1_Contig8847:1..906. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of EY685485 vs. ExPASy Swiss-Prot
Match: R35A3_ARATH (60S ribosomal protein L35a-3 OS=Arabidopsis thaliana GN=RPL35AC PE=2 SV=1)

HSP 1 Score: 204.912 bits (520), Expect = 5.188e-52
Identity = 97/112 (86.61%), Postives = 103/112 (91.96%), Query Frame = 1
Query:   34 MVKGRQGERVRLYVRGTILGYKRSKSNQYPNTSLIQIEGVNTKEEVAWYCGKRLAYIYKAKTKKNGSHYRCIWGKVARSHGNSGVVRAKFKSNLPPTSVGDTVRVFMHPNEI 369
            MVKGRQGERVRLYVRGTILGYKRSKSNQYPNTSL+QIEGVNT+EEV WY GKR+AYIYKAKTKKNGSHYRCIWGKV R HGNSGVVRAKF SNLPP S+G  VRVFM+P+ I
Sbjct:    1 MVKGRQGERVRLYVRGTILGYKRSKSNQYPNTSLVQIEGVNTQEEVNWYKGKRMAYIYKAKTKKNGSHYRCIWGKVTRPHGNSGVVRAKFTSNLPPKSMGSRVRVFMYPSNI 112          
BLAST of EY685485 vs. ExPASy Swiss-Prot
Match: R35A1_ARATH (60S ribosomal protein L35a-1 OS=Arabidopsis thaliana GN=RPL35AA PE=3 SV=1)

HSP 1 Score: 204.912 bits (520), Expect = 5.188e-52
Identity = 96/112 (85.71%), Postives = 103/112 (91.96%), Query Frame = 1
Query:   34 MVKGRQGERVRLYVRGTILGYKRSKSNQYPNTSLIQIEGVNTKEEVAWYCGKRLAYIYKAKTKKNGSHYRCIWGKVARSHGNSGVVRAKFKSNLPPTSVGDTVRVFMHPNEI 369
            MVKGRQGERVRLYVRGTILGYKRSKSNQYPNTSL+Q+EGVNT EEV+WY GKR+AYIYKAKTKKNGSHYRCIWGKV R HGNSGVVRAKF SNLPP S+G  VRVFM+P+ I
Sbjct:    1 MVKGRQGERVRLYVRGTILGYKRSKSNQYPNTSLVQVEGVNTTEEVSWYKGKRMAYIYKAKTKKNGSHYRCIWGKVTRPHGNSGVVRAKFTSNLPPKSMGSRVRVFMYPSNI 112          
BLAST of EY685485 vs. ExPASy Swiss-Prot
Match: R35A2_ARATH (60S ribosomal protein L35a-2 OS=Arabidopsis thaliana GN=RPL35AB PE=3 SV=1)

HSP 1 Score: 200.675 bits (509), Expect = 9.784e-51
Identity = 95/111 (85.59%), Postives = 102/111 (91.89%), Query Frame = 1
Query:   37 VKGRQGERVRLYVRGTILGYKRSKSNQYPNTSLIQIEGVNTKEEVAWYCGKRLAYIYKAKTKKNGSHYRCIWGKVARSHGNSGVVRAKFKSNLPPTSVGDTVRVFMHPNEI 369
            +KGRQGERVRLYVRGT+LGYKRSKSNQYPNTSLIQIEGVNT+EEV WY GKRLAYIYKAKTKKNGSHYRCIWGKV R HGNSGVVR+KF SNLPP S+G  VRVFM+P+ I
Sbjct:    1 MKGRQGERVRLYVRGTVLGYKRSKSNQYPNTSLIQIEGVNTQEEVNWYKGKRLAYIYKAKTKKNGSHYRCIWGKVTRPHGNSGVVRSKFTSNLPPKSMGARVRVFMYPSNI 111          
BLAST of EY685485 vs. ExPASy Swiss-Prot
Match: R35A4_ARATH (60S ribosomal protein L35a-4 OS=Arabidopsis thaliana GN=RPL35AD PE=3 SV=2)

HSP 1 Score: 200.29 bits (508), Expect = 1.278e-50
Identity = 94/111 (84.68%), Postives = 102/111 (91.89%), Query Frame = 1
Query:   37 VKGRQGERVRLYVRGTILGYKRSKSNQYPNTSLIQIEGVNTKEEVAWYCGKRLAYIYKAKTKKNGSHYRCIWGKVARSHGNSGVVRAKFKSNLPPTSVGDTVRVFMHPNEI 369
            +KGRQGERVRLYVRGT+LGYKRSKSNQYPNTSL+QIEGVNT+EEV WY GKRLAYIYKAKTKKNGSHYRCIWGKV R HGNSGVVR+KF SNLPP S+G  VRVFM+P+ I
Sbjct:    1 MKGRQGERVRLYVRGTVLGYKRSKSNQYPNTSLVQIEGVNTQEEVNWYKGKRLAYIYKAKTKKNGSHYRCIWGKVTRPHGNSGVVRSKFTSNLPPKSMGARVRVFMYPSNI 111          
BLAST of EY685485 vs. ExPASy Swiss-Prot
Match: RL33B_YEAST (60S ribosomal protein L33-B OS=Saccharomyces cerevisiae GN=RPL33B PE=1 SV=2)

HSP 1 Score: 120.939 bits (302), Expect = 9.852e-27
Identity = 57/105 (54.29%), Postives = 76/105 (72.38%), Query Frame = 1
Query:   55 ERVRLYVRGTILGYKRSKSNQYPNTSLIQIEGVNTKEEVAWYCGKRLAYIYKAKTKKNGSHYRCIWGKVARSHGNSGVVRAKFKSNLPPTSVGDTVRVFMHPNEI 369
            E  RLYV+G  L Y+RSK    PN SLI+IEGV T +E  +Y GKR+AY+Y+A  +  GS  R +WGKV R+HGNSGVVRA F++NLP  + G +VR+F++P+ I
Sbjct:    3 ESHRLYVKGKHLSYQRSKRVNNPNVSLIKIEGVATPQEAQFYLGKRIAYVYRASKEVRGSKIRVMWGKVTRTHGNSGVVRATFRNNLPAKTFGASVRIFLYPSNI 107          
BLAST of EY685485 vs. ExPASy Swiss-Prot
Match: RL33A_YEAST (60S ribosomal protein L33-A OS=Saccharomyces cerevisiae GN=RPL33A PE=1 SV=3)

HSP 1 Score: 119.783 bits (299), Expect = 2.195e-26
Identity = 56/105 (53.33%), Postives = 76/105 (72.38%), Query Frame = 1
Query:   55 ERVRLYVRGTILGYKRSKSNQYPNTSLIQIEGVNTKEEVAWYCGKRLAYIYKAKTKKNGSHYRCIWGKVARSHGNSGVVRAKFKSNLPPTSVGDTVRVFMHPNEI 369
            E  RLYV+G  L Y+RSK    PN SLI+IEGV T ++  +Y GKR+AY+Y+A  +  GS  R +WGKV R+HGNSGVVRA F++NLP  + G +VR+F++P+ I
Sbjct:    3 ESHRLYVKGKHLSYQRSKRVNNPNVSLIKIEGVATPQDAQFYLGKRIAYVYRASKEVRGSKIRVMWGKVTRTHGNSGVVRATFRNNLPAKTFGASVRIFLYPSNI 107          
BLAST of EY685485 vs. ExPASy Swiss-Prot
Match: RL33A_SCHPO (60S ribosomal protein L33-A OS=Schizosaccharomyces pombe GN=rpl33a PE=2 SV=2)

HSP 1 Score: 110.923 bits (276), Expect = 1.020e-23
Identity = 50/102 (49.02%), Postives = 72/102 (70.59%), Query Frame = 1
Query:   64 RLYVRGTILGYKRSKSNQYPNTSLIQIEGVNTKEEVAWYCGKRLAYIYKAKTKKNGSHYRCIWGKVARSHGNSGVVRAKFKSNLPPTSVGDTVRVFMHPNEI 369
            RLYV+   L ++RSK   +P TSL++IEG ++KEE  +Y GKR+ ++YK+     GS  R IWG V+R HGNSGVVRA+F  NLPP + G ++RV ++P+ +
Sbjct:    7 RLYVKAKHLSFQRSKHVIHPGTSLVKIEGCDSKEEAQFYLGKRICFVYKSNKPVRGSKIRVIWGTVSRPHGNSGVVRARFTHNLPPKTFGASLRVMLYPSNV 108          
BLAST of EY685485 vs. ExPASy Swiss-Prot
Match: RL35A_XENLA (60S ribosomal protein L35a OS=Xenopus laevis GN=rpl35a PE=3 SV=2)

HSP 1 Score: 108.997 bits (271), Expect = 3.874e-23
Identity = 52/107 (48.60%), Postives = 72/107 (67.29%), Query Frame = 1
Query:   64 RLYVRGTILGYKRSKSNQYPNTSLIQIEGVNTKEEVAWYCGKRLAYIYKAKTKK-----NGSHYRCIWGKVARSHGNSGVVRAKFKSNLPPTSVGDTVRVFMHPNEI 369
            RL+ + T  GYKR   NQ  +T+L++IEGV  ++E  +Y GKR AY+YKAK          +  R IWGKV R+HGNSG+VRAKF+SNLP  ++G  +RV ++P+ I
Sbjct:    4 RLWCKATFAGYKRGLRNQREHTALLKIEGVYARDETEFYFGKRCAYVYKAKNNTVTPGGKPNRTRVIWGKVTRAHGNSGMVRAKFRSNLPAKAIGHRIRVMLYPSRI 110          
BLAST of EY685485 vs. ExPASy Swiss-Prot
Match: RL35A_DICDI (60S ribosomal protein L35a OS=Dictyostelium discoideum GN=rpl35a PE=3 SV=1)

HSP 1 Score: 108.227 bits (269), Expect = 6.609e-23
Identity = 47/103 (45.63%), Postives = 78/103 (75.73%), Query Frame = 1
Query:   64 RLYVRGTILGYKRSKSNQYPNTSLIQIEGVNTKEEVAWYCGKRLAYIYK-AKTKKNGSHYRCIWGKVARSHGNSGVVRAKFKSNLPPTSVGDTVRVFMHPNEI 369
            ++Y +G +LGY+RS++ QYPN SLI+IEGV ++E+  +Y GK++  + K +K+ KN + ++  WGK+ ++HG+SGVV+A+F  NLPP ++G  VRV ++P+ I
Sbjct:    3 KIYSKGVVLGYRRSQATQYPNISLIKIEGVVSREDSTFYLGKKVCLVSKVSKSAKNPTGHKISWGKICKTHGSSGVVQARFARNLPPKAMGAPVRVMLYPSNI 105          
BLAST of EY685485 vs. ExPASy Swiss-Prot
Match: RL33B_SCHPO (60S ribosomal protein L33-B OS=Schizosaccharomyces pombe GN=rpl33b PE=1 SV=1)

HSP 1 Score: 108.227 bits (269), Expect = 6.609e-23
Identity = 49/102 (48.04%), Postives = 70/102 (68.63%), Query Frame = 1
Query:   64 RLYVRGTILGYKRSKSNQYPNTSLIQIEGVNTKEEVAWYCGKRLAYIYKAKTKKNGSHYRCIWGKVARSHGNSGVVRAKFKSNLPPTSVGDTVRVFMHPNEI 369
            RLYV+   L ++RSK   +P TS+++IEG ++KEE  +Y GKR+ Y+YK+     GS  R IWG +AR HGNSG VRA+F  NLP  + G ++RV ++P+ I
Sbjct:    7 RLYVKAKHLSFQRSKHVIHPGTSIVKIEGCDSKEEAQFYLGKRVCYVYKSSKAVRGSKIRVIWGTIARPHGNSGAVRARFVHNLPAKTFGSSLRVMLYPSNI 108          
The following BLAST results are available for this feature:
BLAST of EY685485 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 18
Match NameE-valueIdentityDescription
R35A3_ARATH5.188e-5286.6160S ribosomal protein L35a-3 OS=Arabidopsis thalia... [more]
R35A1_ARATH5.188e-5285.7160S ribosomal protein L35a-1 OS=Arabidopsis thalia... [more]
R35A2_ARATH9.784e-5185.5960S ribosomal protein L35a-2 OS=Arabidopsis thalia... [more]
R35A4_ARATH1.278e-5084.6860S ribosomal protein L35a-4 OS=Arabidopsis thalia... [more]
RL33B_YEAST9.852e-2754.2960S ribosomal protein L33-B OS=Saccharomyces cerev... [more]
RL33A_YEAST2.195e-2653.3360S ribosomal protein L33-A OS=Saccharomyces cerev... [more]
RL33A_SCHPO1.020e-2349.0260S ribosomal protein L33-A OS=Schizosaccharomyces... [more]
RL35A_XENLA3.874e-2348.6060S ribosomal protein L35a OS=Xenopus laevis GN=rp... [more]
RL35A_DICDI6.609e-2345.6360S ribosomal protein L35a OS=Dictyostelium discoi... [more]
RL33B_SCHPO6.609e-2348.0460S ribosomal protein L33-B OS=Schizosaccharomyces... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C2-003-019-H04-CT.F Sweet orange bark, greenhouse plant Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY685485 ID=EY685485; Name=EY685485; organism=Citrus sinensis; type=EST; length=906bp
GCAAGCAGGTGGGCAGAGCTTCAATCATAAACAATGGTGAAGGGCAGGCA
AGGCGAGCGCGTCAGACTCTATGTTCGAGGAACAATTCTGGGATACAAAA
GGTCAAAATCAAACCAGTATCCAAACACATCACTGATTCAGATCGAGGGA
GTGAACACAAAGGAAGAGGTGGCGTGGTACTGCGGCAAGCGTTTGGCTTA
CATTTACAAGGCCAAGACTAAGAAGAACGGGAGCCACTATCGTTGCATTT
GGGGAAAAGTTGCCAGATCTCACGGTAACAGCGGCGTCGTTCGTGCCAAG
TTCAAGTCCAATCTCCCTCCAACATCCGTGGGAGATACAGTTAGGGTTTT
CATGCATCCCAACGAGATATAGAGCAGCCTGGGTTCAAAAAACTACTAGG
TGGGGGGGGGGAAGCAACATCTGAATCTGAGATCTGTACATGCACACTGA
TCGTCTCATAGGTTCAAGTCCCCGAGCACCCTAACAAACATAGCACGAGA
GTCCAAACGCAACAAAAGCAGAAGCTTAAGCGCACACCAACAACAGGTCA
ACCCAGCACCGCCCCCACAAGGGCCACCGCCGACAAACAAGGCCCCCATC
CCAAAAAAGAACCGCAAGCGAGCGGAGGACGAGGAAAAGAGAGAAGAGGA
GGAGGGAGAAAAAAATACAAGAACCAACCACCAGGGAAAGAAAAGCTACA
CCGAGCACAACTCGACGCAGAAAGCGCACCCAGCCACAAGGGCACAAGCG
CCGAAACACCCGACAGACAGACGAACAAGCACCAGACGACAAGGAGAGCA
CCGCACGAGAACAGCCGCAACACCCCACGAAGACAAAGGACAGGCGACAC
CCCGACAGACGGAGCACCAACAGCGGGCACCAAAGCATGAAGGAAACAGG
GACCCC
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