EY685468

Overview
NameEY685468
Unique NameEY685468
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length1020
Libraries
Library NameType
Sweet orange bark, greenhouse plantcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of EY685468 vs. ExPASy Swiss-Prot
Match: RDGC_PSEFS (Recombination-associated protein rdgC OS=Pseudomonas fluorescens (strain SBW25) GN=rdgC PE=3 SV=1)

HSP 1 Score: 166.392 bits (420), Expect = 3.731e-41
Identity = 86/99 (86.87%), Postives = 88/99 (88.89%), Query Frame = -3 
Query:    2 SALATKLARPCASQELTTYGFVAPFGKGEDAPLVHVSGDFLLIAARKEERILPGSVVRDXXXXXXXXXXXEQMRKVYKKERDQIKDEIIQAFLPRAFIR 298
            +A+ATKLARPCASQELTTYGFVAPFGKGEDAPLVHVSGDFLLIAARKEERILPGSVVRD           EQMRKVYKKERDQIKDEIIQAFLPRAFIR
Sbjct:   24 AAMATKLARPCASQELTTYGFVAPFGKGEDAPLVHVSGDFLLIAARKEERILPGSVVRDALKEKVEEIEAEQMRKVYKKERDQIKDEIIQAFLPRAFIR 122

HSP 2 Score: 21.557 bits (44), Expect = 3.731e-41
Identity = 9/13 (69.23%), Postives = 11/13 (84.62%), Query Frame = -1 
Query:  322 EN*VIYGLTQDLP 360
            +N +IY LTQDLP
Sbjct:    4 KNLLIYRLTQDLP 16
[Close]
BLAST of EY685468 vs. ExPASy Swiss-Prot
Match: RDGC_PSEPF (Recombination-associated protein rdgC OS=Pseudomonas fluorescens (strain Pf0-1) GN=rdgC PE=3 SV=1)

HSP 1 Score: 166.007 bits (419), Expect = 4.861e-41
Identity = 86/99 (86.87%), Postives = 88/99 (88.89%), Query Frame = -3 
Query:    2 SALATKLARPCASQELTTYGFVAPFGKGEDAPLVHVSGDFLLIAARKEERILPGSVVRDXXXXXXXXXXXEQMRKVYKKERDQIKDEIIQAFLPRAFIR 298
            +ALATKLARPCASQELTTYGFVAPFGKGEDAPLVHVSGDFLLI+ARKEERILPGSVVRD           EQMRKVYKKERDQIKDEIIQAFLPRAFIR
Sbjct:   24 TALATKLARPCASQELTTYGFVAPFGKGEDAPLVHVSGDFLLISARKEERILPGSVVRDAVKEKVEEIEAEQMRKVYKKERDQIKDEIIQAFLPRAFIR 122

HSP 2 Score: 21.557 bits (44), Expect = 4.861e-41
Identity = 9/13 (69.23%), Postives = 11/13 (84.62%), Query Frame = -1 
Query:  322 EN*VIYGLTQDLP 360
            +N +IY LTQDLP
Sbjct:    4 KNLLIYRLTQDLP 16
[Close]
BLAST of EY685468 vs. ExPASy Swiss-Prot
Match: RDGC_PSEF5 (Recombination-associated protein rdgC OS=Pseudomonas fluorescens (strain Pf-5 / ATCC BAA-477) GN=rdgC PE=3 SV=1)

HSP 1 Score: 162.925 bits (411), Expect = 4.038e-40
Identity = 84/99 (84.85%), Postives = 87/99 (87.88%), Query Frame = -3 
Query:    2 SALATKLARPCASQELTTYGFVAPFGKGEDAPLVHVSGDFLLIAARKEERILPGSVVRDXXXXXXXXXXXEQMRKVYKKERDQIKDEIIQAFLPRAFIR 298
            +ALATKLARPCASQELTTYGFVAPFGKGEDAPLVHVS DF+L+AARKEERILPGSVVRD           EQMRKVYKKERDQIKDEIIQAFLPRAFIR
Sbjct:   24 TALATKLARPCASQELTTYGFVAPFGKGEDAPLVHVSQDFMLVAARKEERILPGSVVRDAVKEKVEEIEAEQMRKVYKKERDQIKDEIIQAFLPRAFIR 122

HSP 2 Score: 21.557 bits (44), Expect = 4.038e-40
Identity = 9/13 (69.23%), Postives = 11/13 (84.62%), Query Frame = -1 
Query:  322 EN*VIYGLTQDLP 360
            +N +IY LTQDLP
Sbjct:    4 KNLLIYRLTQDLP 16
[Close]
BLAST of EY685468 vs. ExPASy Swiss-Prot
Match: RDGC_PSEPK (Recombination-associated protein rdgC OS=Pseudomonas putida (strain KT2440) GN=rdgC PE=3 SV=1)

HSP 1 Score: 155.992 bits (393), Expect = 3.256e-37
Identity = 81/99 (81.82%), Postives = 85/99 (85.86%), Query Frame = -3 
Query:    2 SALATKLARPCASQELTTYGFVAPFGKGEDAPLVHVSGDFLLIAARKEERILPGSVVRDXXXXXXXXXXXEQMRKVYKKERDQIKDEIIQAFLPRAFIR 298
            +ALA+K ARPCASQELTTYGFVAPFGKGEDAPLVHVSG++LLIAARKEERILP SVV D           EQMRKVYKKERDQIKDEIIQAFLPRAFIR
Sbjct:   24 AALASKPARPCASQELTTYGFVAPFGKGEDAPLVHVSGEYLLIAARKEERILPSSVVNDAVKEKVEEIETEQMRKVYKKERDQIKDEIIQAFLPRAFIR 122
[Close]
BLAST of EY685468 vs. ExPASy Swiss-Prot
Match: RDGC_PSEPG (Recombination-associated protein rdgC OS=Pseudomonas putida (strain GB-1) GN=rdgC PE=3 SV=1)

HSP 1 Score: 155.992 bits (393), Expect = 3.256e-37
Identity = 81/99 (81.82%), Postives = 85/99 (85.86%), Query Frame = -3 
Query:    2 SALATKLARPCASQELTTYGFVAPFGKGEDAPLVHVSGDFLLIAARKEERILPGSVVRDXXXXXXXXXXXEQMRKVYKKERDQIKDEIIQAFLPRAFIR 298
            +ALA+K ARPCASQELTTYGFVAPFGKGEDAPLVHVSG++LLIAARKEERILP SVV D           EQMRKVYKKERDQIKDEIIQAFLPRAFIR
Sbjct:   24 AALASKPARPCASQELTTYGFVAPFGKGEDAPLVHVSGEYLLIAARKEERILPSSVVNDAVKEKVEEIETEQMRKVYKKERDQIKDEIIQAFLPRAFIR 122
[Close]
BLAST of EY685468 vs. ExPASy Swiss-Prot
Match: RDGC_PSESM (Recombination-associated protein rdgC OS=Pseudomonas syringae pv. tomato GN=rdgC PE=3 SV=1)

HSP 1 Score: 154.066 bits (388), Expect = 3.919e-37
Identity = 80/99 (80.81%), Postives = 84/99 (84.85%), Query Frame = -3 
Query:    2 SALATKLARPCASQELTTYGFVAPFGKGEDAPLVHVSGDFLLIAARKEERILPGSVVRDXXXXXXXXXXXEQMRKVYKKERDQIKDEIIQAFLPRAFIR 298
            +ALATK AR CASQE+ TYGFVAPFGKGEDAPLVH+S DFLLIAARKEERILPGSVVRD           EQMRKVYKKERDQ+KDEIIQAFLPRAFIR
Sbjct:   24 TALATKPARACASQEVATYGFVAPFGKGEDAPLVHISQDFLLIAARKEERILPGSVVRDALKEKVDEIEAEQMRKVYKKERDQLKDEIIQAFLPRAFIR 122

HSP 2 Score: 20.4014 bits (41), Expect = 3.919e-37
Identity = 8/13 (61.54%), Postives = 11/13 (84.62%), Query Frame = -1 
Query:  322 EN*VIYGLTQDLP 360
            +N +IY LTQD+P
Sbjct:    4 KNLLIYRLTQDVP 16
[Close]
BLAST of EY685468 vs. ExPASy Swiss-Prot
Match: RDGC_PSEE4 (Recombination-associated protein rdgC OS=Pseudomonas entomophila (strain L48) GN=rdgC PE=3 SV=1)

HSP 1 Score: 154.836 bits (390), Expect = 7.253e-37
Identity = 81/99 (81.82%), Postives = 84/99 (84.85%), Query Frame = -3 
Query:    2 SALATKLARPCASQELTTYGFVAPFGKGEDAPLVHVSGDFLLIAARKEERILPGSVVRDXXXXXXXXXXXEQMRKVYKKERDQIKDEIIQAFLPRAFIR 298
            +ALA+K ARPCASQELTTYGFVAPFGKG DAPLVHVSG+FLLIAARKEERILP SVV D           EQMRKVYKKERDQIKDEIIQAFLPRAFIR
Sbjct:   24 AALASKPARPCASQELTTYGFVAPFGKGADAPLVHVSGEFLLIAARKEERILPSSVVNDAVKEKVEEIETEQMRKVYKKERDQIKDEIIQAFLPRAFIR 122
[Close]
BLAST of EY685468 vs. ExPASy Swiss-Prot
Match: RDGC_PSE14 (Recombination-associated protein rdgC OS=Pseudomonas syringae pv. phaseolicola (strain 1448A / Race 6) GN=rdgC PE=3 SV=1)

HSP 1 Score: 154.066 bits (388), Expect = 1.237e-36
Identity = 80/99 (80.81%), Postives = 84/99 (84.85%), Query Frame = -3 
Query:    2 SALATKLARPCASQELTTYGFVAPFGKGEDAPLVHVSGDFLLIAARKEERILPGSVVRDXXXXXXXXXXXEQMRKVYKKERDQIKDEIIQAFLPRAFIR 298
            +ALATK AR CASQE+ TYGFVAPFGKGEDAPLVH+S DFLLIAARKEERILPGSVVRD           EQMRKVYKKERDQ+KDEIIQAFLPRAFIR
Sbjct:   24 TALATKPARACASQEVATYGFVAPFGKGEDAPLVHISQDFLLIAARKEERILPGSVVRDALKEKVDEIEAEQMRKVYKKERDQLKDEIIQAFLPRAFIR 122
[Close]
BLAST of EY685468 vs. ExPASy Swiss-Prot
Match: RDGC_PSEU2 (Recombination-associated protein rdgC OS=Pseudomonas syringae pv. syringae (strain B728a) GN=rdgC PE=3 SV=1)

HSP 1 Score: 153.295 bits (386), Expect = 2.110e-36
Identity = 79/99 (79.80%), Postives = 84/99 (84.85%), Query Frame = -3 
Query:    2 SALATKLARPCASQELTTYGFVAPFGKGEDAPLVHVSGDFLLIAARKEERILPGSVVRDXXXXXXXXXXXEQMRKVYKKERDQIKDEIIQAFLPRAFIR 298
            +ALATK AR CASQE+ TYGFVAPFGKGEDAPLVH+S DF+LIAARKEERILPGSVVRD           EQMRKVYKKERDQ+KDEIIQAFLPRAFIR
Sbjct:   24 TALATKPARACASQEVATYGFVAPFGKGEDAPLVHISQDFMLIAARKEERILPGSVVRDALKEKVDEIEAEQMRKVYKKERDQLKDEIIQAFLPRAFIR 122
[Close]
BLAST of EY685468 vs. ExPASy Swiss-Prot
Match: RDGC_PSEAE (Recombination-associated protein rdgC OS=Pseudomonas aeruginosa GN=rdgC PE=1 SV=1)

HSP 1 Score: 145.976 bits (367), Expect = 3.369e-34
Identity = 74/98 (75.51%), Postives = 78/98 (79.59%), Query Frame = -3 
Query:    2 ALATKLARPCASQELTTYGFVAPFGKGEDAPLVHVSGDFLLIAARKEERILPGSVVRDXXXXXXXXXXXEQMRKVYKKERDQIKDEIIQAFLPRAFIR 295
            AL  K ARPCASQELTTYGF APFGKG DAPLVHVS DF LI+ARKEERILPGSVVRD           +QMRKVYKKERDQ+KDEI+Q  LPRAFIR
Sbjct:   25 ALGEKSARPCASQELTTYGFTAPFGKGPDAPLVHVSQDFFLISARKEERILPGSVVRDALKEKVDEIEAQQMRKVYKKERDQLKDEIVQTLLPRAFIR 122
The following BLAST results are available for this feature:
BLAST of EY685468 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 90
Match NameE-valueIdentityDescription
RDGC_PSEFS3.731e-4186.87Recombination-associated protein rdgC OS=Pseudomon... [more]
RDGC_PSEPF4.861e-4186.87Recombination-associated protein rdgC OS=Pseudomon... [more]
RDGC_PSEF54.038e-4084.85Recombination-associated protein rdgC OS=Pseudomon... [more]
RDGC_PSEPK3.256e-3781.82Recombination-associated protein rdgC OS=Pseudomon... [more]
RDGC_PSEPG3.256e-3781.82Recombination-associated protein rdgC OS=Pseudomon... [more]
RDGC_PSESM3.919e-3780.81Recombination-associated protein rdgC OS=Pseudomon... [more]
RDGC_PSEE47.253e-3781.82Recombination-associated protein rdgC OS=Pseudomon... [more]
RDGC_PSE141.237e-3680.81Recombination-associated protein rdgC OS=Pseudomon... [more]
RDGC_PSEU22.110e-3679.80Recombination-associated protein rdgC OS=Pseudomon... [more]
RDGC_PSEAE3.369e-3475.51Recombination-associated protein rdgC OS=Pseudomon... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C2-003-019-F05-CT.F Sweet orange bark, greenhouse plant Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY685468 ID=EY685468; Name=EY685468; organism=Citrus sinensis; type=EST; length=1020bp
GACGGATGAACGCGCGCGGCAGGAAGGCCTGGATGATTTCATCCTTGATC
TGGTCGCGTTCCTTTTTGTAGACCTTGCGCATTTGCTCGGCTTCGATCTC
TTCGACCTTTTCCTTCACCGCGTCACGCACTACGCTGCCCGGCAGGATAC
GTTCTTCCTTGCGCGCAGCGATCAGCAGGAAATCACCGCTGACGTGCACC
AGGGGCGCGTCTTCGCCTTTACCGAAAGGGGCGACGAAACCGTAAGTGGT
CAACTCCTGGCTTGCACAAGGGCGCGCCAGTTTGGTGGCCAGTGCAGAAT
TCCAACGCCTCACGCTCAACACGGAAGATCTTGGGTCAGGCCATAGATAA
CCTAGTTTTCTAGCACAATGCAGTGCCTCTCAAAAAGAGAAAAGAGAAGG
AGGAGAGAAGAGGCGCGGGCGGGGAGAGAACCGCCAGCCGCCCCGGGTCC
CCAGGAAAGCCTGACCCCAGCCCGCGAACACCCCGCTTGCCCAAACATGG
GCCGACGAACTACAGAAAACCGCACCCAGGGCAGAGACCACAAAAACGAC
GAACAAAAAAAAAAAAAACAAACAAAGAAAAACAAAAACAAAAAAAGAGA
AAAAAAAAGAACGATCAGGGCCGCCGGAGCCAGGTGAAAGACGGCCACGT
CGGCACCTCCCGGGCCGGAGACACCGGGACCACGCGCCCAACCAGCAGTA
GAACGAATCAGAGACAGGAGGATACAGCGCGTGTGAAGCAGACGAAAGAC
AGTTACGCCCCACGAAAGGAAGCGACTACCCGGCCAGCCCACGACCATGA
CGAAGCACGAAAGGGAGAAGAGGAGGAGGAAGAGAGGAAGGGGAAGGAGA
GGAAGCGGCCAAACAGACAAAGAGAACAGCACCCAGAGCCCGGCCAAGGA
ACGGGAGGACGGACAGAACAAGAAACAGAATGCCAGATGTGACAACGAGA
CAATGGCAGGGCAAAAGAGAAAGACCAACAGAGGCACGAAAAGAAAGATA
GAGTCTGGAGGCAACAAGAC
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