EY685458

Overview
NameEY685458
Unique NameEY685458
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length954
Libraries
Library NameType
Sweet orange bark, greenhouse plantcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
EY685458_ssr562 microsatellite EY685458_ssr562:562..573. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
BLAST of EY685458 vs. ExPASy Swiss-Prot
Match: MT3_CARPA (Metallothionein-like protein type 3 OS=Carica papaya PE=3 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 1.527e-17
Identity = 40/58 (68.97%), Postives = 47/58 (81.03%), Query Frame = 3
Query:   66 MSDTCGNCDCADRSQCVKKGSSYAADFVETDLSFVSTVVVMDVXAAEAGGNCKCGPTC 239
            MSDTCGNCDCAD++QCVKKGSSY AD +ET+ S ++  VVMD  AAE  G CKCGP+C
Sbjct:    1 MSDTCGNCDCADKTQCVKKGSSYTADIIETEKSIMT--VVMDAPAAENDGKCKCGPSC 56          
BLAST of EY685458 vs. ExPASy Swiss-Prot
Match: MT3_ACTDE (Metallothionein-like protein type 3 OS=Actinidia deliciosa GN=pKIWI503 PE=2 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 2.438e-15
Identity = 40/59 (67.80%), Postives = 45/59 (76.27%), Query Frame = 3
Query:   66 MSDTCGNCDCADRSQCVKKGSSYAADFVETDLSFVSTVVVMDVXAAEAGGNCKCGPTCP 242
            MSD CGNCDCAD SQCVKKG+S   D VETD S++   VVM V AAE+GG CKCG +CP
Sbjct:    1 MSDKCGNCDCADSSQCVKKGNS--IDIVETDKSYIED-VVMGVPAAESGGKCKCGTSCP 56          
BLAST of EY685458 vs. ExPASy Swiss-Prot
Match: MT3_MUSAC (Metallothionein-like protein type 3 OS=Musa acuminata PE=3 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 2.282e-13
Identity = 34/55 (61.82%), Postives = 39/55 (70.91%), Query Frame = 3
Query:   75 TCGNCDCADRSQCVKKGSSYAADFVETDLSFVSTVVVMDVXAAEAGGNCKCGPTC 239
            TCGNCDC D+SQCVKKG+SY  D VET+ S+V  V+V    AAE  G CKCG  C
Sbjct:    3 TCGNCDCVDKSQCVKKGNSYGIDIVETEKSYVDEVIVA-AEAAEHDGKCKCGAAC 56          
BLAST of EY685458 vs. ExPASy Swiss-Prot
Match: MT3_PRUAV (Metallothionein-like protein 1 OS=Prunus avium GN=MT1 PE=3 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 8.670e-13
Identity = 34/58 (58.62%), Postives = 40/58 (68.97%), Query Frame = 3
Query:   66 MSDTCGNCDCADRSQCVKKGSSYAADFVETDLSFVSTVVVMDVXAAEAGGNCKCGPTC 239
            MS  C NCDC+D SQC KKG S+    VET+   + T V+MD  AAE GGNCKCGP+C
Sbjct:    1 MSSKCSNCDCSDSSQCTKKGYSFDLVIVETENRSMDT-VIMDAPAAENGGNCKCGPSC 57          
BLAST of EY685458 vs. ExPASy Swiss-Prot
Match: MT3A_ORYSJ (Metallothionein-like protein 3A OS=Oryza sativa subsp. japonica GN=MT3A PE=2 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 2.135e-11
Identity = 32/58 (55.17%), Postives = 37/58 (63.79%), Query Frame = 3
Query:   66 MSDTCGNCDCADRSQCVKKGSSYAADFVETDLSFVSTVVVMDVXAAEAGGNCKCGPTC 239
            MSD CGNCDCAD+SQCVKKG+SY    VE + S        +V A E  G CKCG +C
Sbjct:    1 MSDKCGNCDCADKSQCVKKGTSYGVVIVEAEKSHFE-----EVAAGEENGGCKCGTSC 53          
BLAST of EY685458 vs. ExPASy Swiss-Prot
Match: MT3A_ORYSI (Metallothionein-like protein 3A OS=Oryza sativa subsp. indica GN=MT3A PE=3 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 2.135e-11
Identity = 32/58 (55.17%), Postives = 37/58 (63.79%), Query Frame = 3
Query:   66 MSDTCGNCDCADRSQCVKKGSSYAADFVETDLSFVSTVVVMDVXAAEAGGNCKCGPTC 239
            MSD CGNCDCAD+SQCVKKG+SY    VE + S        +V A E  G CKCG +C
Sbjct:    1 MSDKCGNCDCADKSQCVKKGTSYGVVIVEAEKSHFE-----EVAAGEENGGCKCGTSC 53          
The following BLAST results are available for this feature:
BLAST of EY685458 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 6
Match NameE-valueIdentityDescription
MT3_CARPA1.527e-1768.97Metallothionein-like protein type 3 OS=Carica papa... [more]
MT3_ACTDE2.438e-1567.80Metallothionein-like protein type 3 OS=Actinidia d... [more]
MT3_MUSAC2.282e-1361.82Metallothionein-like protein type 3 OS=Musa acumin... [more]
MT3_PRUAV8.670e-1358.62Metallothionein-like protein 1 OS=Prunus avium GN=... [more]
MT3A_ORYSJ2.135e-1155.17Metallothionein-like protein 3A OS=Oryza sativa su... [more]
MT3A_ORYSI2.135e-1155.17Metallothionein-like protein 3A OS=Oryza sativa su... [more]
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Properties
Property NameValue
Genbank descriptionCS00-C2-003-019-E03-CT.F Sweet orange bark, greenhouse plant Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY685458 ID=EY685458; Name=EY685458; organism=Citrus sinensis; type=EST; length=954bp
CAAGTTTCGTAAATAAAGAGCCCTCTATTTCCAGTTTTAAGTTCTAAGTT
CTAAGCTCAATCAACATGTCGGACACCTGCGGCAACTGCGACTGCGCTGA
CAGGAGCCAGTGTGTGAAGAAGGGAAGCAGCTATGCTGCTGACTTCGTCG
AGACTGACTTGAGCTTTGTCAGCACCGTTGTTGTCATGGACGTTCANGCT
GCTGAGGCTGGAGGTAACTGCAAGTGCGGCCCCACCTGCCCTTGGGGTGA
ACTGCCCTTGTGGTAATCCCTAATAAGCAAACCCTGGCGCAAAAAAATAA
AACTTGCAAGGGGGCCCTAATATTGGGGGGGGGTAAAAAAATGGGGGGGG
GTTAAAAAAAAAAAAAAAAAAAAAAAATACCCCCCCCCNNGGGGGGGGAG
GCCCCAAAAAAAAAAAAAAAGAGGACACAACGGAGGCGCCCACCCACGCC
CCAAACAGGCCCCCTCCTCGGANNGGGTAGAACCCGACGCCGGCCCTCGC
CCNNNNNNANANNNTNANNNNNTGCCTCTCCTGCCATACCCCACCTGATG
CCCCTCTCCGCCGCGCGCGCGCGGTTCCGGCCCCCCCCNNNAANATCCAC
GCCGNNATGGNANGAGGGGGATATGGTGAGAGAGTGGTAAGGGGAACAAT
ATGAGTCTAGATCCCGCCCNTATATTNNNTTATGAGGTGNGTGTAATGGG
GGGGGGGGAGAGAGCGAATGTACACAGAGGAAGTAGTTAGGGGTTTAGGG
GGGGAAGGGTAGTGCCTCGCCCTCTCGCCGCCGGCGGACCCCGCCCCNGG
GGGGGTGTGGGGAGGGGGCCCTCACCCCCGGTGAGTGGGTGAGAGGGGGA
AGGGTGGGAATTGGTAGTGAGAGACGAGACGAGTATGGGGAGAAGTATAT
GCAGAAGATCACAGGCTGCTTTCTGAGCAGCAGCCATGCCGCGTCTCCAC
CGCA
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