EY685369

Overview
NameEY685369
Unique NameEY685369
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length944
Libraries
Library NameType
Sweet orange bark, greenhouse plantcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY685369 vs. ExPASy Swiss-Prot
Match: ARA3_ARATH (Ras-related protein ARA-3 OS=Arabidopsis thaliana GN=ARA-3 PE=2 SV=1)

HSP 1 Score: 164.081 bits (414), Expect = 1.070e-39
Identity = 80/91 (87.91%), Postives = 86/91 (94.51%), Query Frame = 2
Query:   26 LVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEQVFFSIARDIKQRLADTDSRSEPSTIKINQPDQAGGVGQAAQKSACCG 298
            LVGNKADMDESKRAVPT+KGQALADEYGIKFFETSAKTNLNVE+VFFSI RDIKQRL+DTDSR+EP+TIKI+Q DQA G GQA QKSACCG
Sbjct:  125 LVGNKADMDESKRAVPTAKGQALADEYGIKFFETSAKTNLNVEEVFFSIGRDIKQRLSDTDSRAEPATIKISQTDQAAGAGQATQKSACCG 215          
BLAST of EY685369 vs. ExPASy Swiss-Prot
Match: RB1BV_BETVU (Ras-related protein RAB1BV OS=Beta vulgaris GN=RAB1BV PE=2 SV=1)

HSP 1 Score: 139.813 bits (351), Expect = 2.162e-32
Identity = 74/92 (80.43%), Postives = 80/92 (86.96%), Query Frame = 2
Query:   26 LVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEQVFFSIARDIKQRLADTDSRSEPS-TIKINQPDQAGGVGQAAQKSACCG 298
            LVGNKADMDESKRAVPT+KGQALADEYGIKFFETSAKTNLNVE+VFFSIARDIKQRLAD+D+R E   +I I   DQ+G   QAA KSACCG
Sbjct:  125 LVGNKADMDESKRAVPTAKGQALADEYGIKFFETSAKTNLNVEEVFFSIARDIKQRLADSDTRQEAQPSITIKPADQSG--NQAAAKSACCG 214          
BLAST of EY685369 vs. ExPASy Swiss-Prot
Match: RAB8A_DICDI (Ras-related protein Rab-8A OS=Dictyostelium discoideum GN=rab8A PE=3 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 4.096e-15
Identity = 45/90 (50.00%), Postives = 62/90 (68.89%), Query Frame = 2
Query:   26 LVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEQVFFSIARDIKQRLADTDSRSEPSTIKINQPDQAGGVGQAAQKSACC 295
            L+GNK DM E K+ V +S+G++LADEYGIKF ETSAK ++NVE+ F S+A+DIK+R+ DT +  +P  +   QP    G     +K ACC
Sbjct:  125 LIGNKCDMAE-KKVVDSSRGKSLADEYGIKFLETSAKNSINVEEAFISLAKDIKKRMIDTPN-EQPQVV---QPGTNLGANN-NKKKACC 208          
BLAST of EY685369 vs. ExPASy Swiss-Prot
Match: RAB8B_DICDI (Ras-related protein Rab-8B OS=Dictyostelium discoideum GN=rab8B PE=2 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 9.124e-15
Identity = 42/90 (46.67%), Postives = 58/90 (64.44%), Query Frame = 2
Query:   26 LVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEQVFFSIARDIKQRLADTDSRSEPSTIKINQPDQAGGVGQAAQKSACC 295
            L+GNK DM E K+ V +S+G++LADEYGIKF ETSAK ++NVE+ F  +A+DIK+R+ DT           N PD    +    +K+ CC
Sbjct:  125 LIGNKCDMTE-KKVVDSSRGKSLADEYGIKFLETSAKNSVNVEEAFIGLAKDIKKRMIDTP----------NDPDHTICITPNNKKNTCC 203          
BLAST of EY685369 vs. ExPASy Swiss-Prot
Match: RAB10_PONAB (Ras-related protein Rab-10 OS=Pongo abelii GN=RAB10 PE=2 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 3.833e-13
Identity = 40/90 (44.44%), Postives = 55/90 (61.11%), Query Frame = 2
Query:   26 LVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEQVFFSIARDIKQRLADTDSRSEPSTIKINQPDQAGGVGQAAQKSACC 295
            L+GNK DMD+ KR VP  KG+ +A E+GI+FFETSAK N+N+E+ F ++A DI ++    +  SE         D + G G    KS CC
Sbjct:  119 LLGNKCDMDD-KRVVPKGKGEQIAREHGIRFFETSAKANINIEKAFLTLAEDILRKTPVKEPNSE-------NVDISSGGGVTGWKSKCC 200          
BLAST of EY685369 vs. ExPASy Swiss-Prot
Match: RAB10_MOUSE (Ras-related protein Rab-10 OS=Mus musculus GN=Rab10 PE=1 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 3.833e-13
Identity = 40/90 (44.44%), Postives = 55/90 (61.11%), Query Frame = 2
Query:   26 LVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEQVFFSIARDIKQRLADTDSRSEPSTIKINQPDQAGGVGQAAQKSACC 295
            L+GNK DMD+ KR VP  KG+ +A E+GI+FFETSAK N+N+E+ F ++A DI ++    +  SE         D + G G    KS CC
Sbjct:  119 LLGNKCDMDD-KRVVPKGKGEQIAREHGIRFFETSAKANINIEKAFLTLAEDILRKTPVKEPNSE-------NVDISSGGGVTGWKSKCC 200          
BLAST of EY685369 vs. ExPASy Swiss-Prot
Match: RAB10_HUMAN (Ras-related protein Rab-10 OS=Homo sapiens GN=RAB10 PE=1 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 3.833e-13
Identity = 40/90 (44.44%), Postives = 55/90 (61.11%), Query Frame = 2
Query:   26 LVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEQVFFSIARDIKQRLADTDSRSEPSTIKINQPDQAGGVGQAAQKSACC 295
            L+GNK DMD+ KR VP  KG+ +A E+GI+FFETSAK N+N+E+ F ++A DI ++    +  SE         D + G G    KS CC
Sbjct:  119 LLGNKCDMDD-KRVVPKGKGEQIAREHGIRFFETSAKANINIEKAFLTLAEDILRKTPVKEPNSE-------NVDISSGGGVTGWKSKCC 200          
BLAST of EY685369 vs. ExPASy Swiss-Prot
Match: RAB10_CANFA (Ras-related protein Rab-10 OS=Canis familiaris GN=RAB10 PE=2 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 3.833e-13
Identity = 40/90 (44.44%), Postives = 55/90 (61.11%), Query Frame = 2
Query:   26 LVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEQVFFSIARDIKQRLADTDSRSEPSTIKINQPDQAGGVGQAAQKSACC 295
            L+GNK DMD+ KR VP  KG+ +A E+GI+FFETSAK N+N+E+ F ++A DI ++    +  SE         D + G G    KS CC
Sbjct:  119 LLGNKCDMDD-KRVVPKGKGEQIAREHGIRFFETSAKVNINIEKAFLTLAEDILRKTPVKEPNSE-------NVDISSGGGVTGWKSKCC 200          
BLAST of EY685369 vs. ExPASy Swiss-Prot
Match: RAB10_CHICK (Ras-related protein Rab-10 OS=Gallus gallus GN=RAB10 PE=2 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 6.539e-13
Identity = 40/90 (44.44%), Postives = 55/90 (61.11%), Query Frame = 2
Query:   26 LVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEQVFFSIARDIKQRLADTDSRSEPSTIKINQPDQAGGVGQAAQKSACC 295
            L+GNK DM E KR VP +KG+ +A E+GI+FFETSAK N+N+E+ F ++A DI ++    +  SE         D + G G    KS CC
Sbjct:  119 LLGNKCDM-EDKRVVPKAKGEQIAREHGIRFFETSAKANINIEKAFLTLAEDILRKTPVKEPNSE-------NVDISSGGGVTGWKSKCC 200          
BLAST of EY685369 vs. ExPASy Swiss-Prot
Match: YPTV2_VOLCA (GTP-binding protein yptV2 OS=Volvox carteri GN=YPTV2 PE=3 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 1.115e-12
Identity = 38/94 (40.43%), Postives = 57/94 (60.64%), Query Frame = 2
Query:   26 LVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEQVFFSIARDIKQRLADTDSRS---EPSTIKINQPDQ-AGGVGQAAQKSACC 295
            LVGNK D+ E KR V  ++GQALADE+G +F+ETSAK N++VE+ F ++A+D+  R+    +     +   +   QP +   G    AQ  +CC
Sbjct:  123 LVGNKLDLAEDKRVVSIARGQALADEFGFRFYETSAKDNVHVEEAFIAVAKDVLARMEGEHANQQLLQQQQLSAAQPVRLTSGSPSPAQGKSCC 216          
The following BLAST results are available for this feature:
BLAST of EY685369 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 16
Match NameE-valueIdentityDescription
ARA3_ARATH1.070e-3987.91Ras-related protein ARA-3 OS=Arabidopsis thaliana ... [more]
RB1BV_BETVU2.162e-3280.43Ras-related protein RAB1BV OS=Beta vulgaris GN=RAB... [more]
RAB8A_DICDI4.096e-1550.00Ras-related protein Rab-8A OS=Dictyostelium discoi... [more]
RAB8B_DICDI9.124e-1546.67Ras-related protein Rab-8B OS=Dictyostelium discoi... [more]
RAB10_PONAB3.833e-1344.44Ras-related protein Rab-10 OS=Pongo abelii GN=RAB1... [more]
RAB10_MOUSE3.833e-1344.44Ras-related protein Rab-10 OS=Mus musculus GN=Rab1... [more]
RAB10_HUMAN3.833e-1344.44Ras-related protein Rab-10 OS=Homo sapiens GN=RAB1... [more]
RAB10_CANFA3.833e-1344.44Ras-related protein Rab-10 OS=Canis familiaris GN=... [more]
RAB10_CHICK6.539e-1344.44Ras-related protein Rab-10 OS=Gallus gallus GN=RAB... [more]
YPTV2_VOLCA1.115e-1240.43GTP-binding protein yptV2 OS=Volvox carteri GN=YPT... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionCS00-C2-003-018-C12-CT.F Sweet orange bark, greenhouse plant Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY685369 ID=EY685369; Name=EY685369; organism=Citrus sinensis; type=EST; length=944bp
CCCACGCGTCCGGTCAACAACCTCTTTGGTAGGAAACAAAGCTGACATGG
ACGAAAGCAAAAGGGCTGTGCCTACCTCAAAGGGTCAAGCACTTGCTGAT
GAGTATGGTATAAAATTTTTTGAAACCAGTGCAAAGACAAATCTAAATGT
GGAGCAAGTTTTCTTTTCAATAGCAAGGGATATTAAACAAAGGCTTGCTG
ATACTGACTCAAGATCTGAGCCCTCAACAATCAAGATTAATCAACCAGAC
CAGGCCGGGGGGGTTGGTCAAGCCGCCCAAAAATCGGCTTGCTGTGGTGG
TACTTAATAACCCATAACTTCTGAGGCACGTCCAGGTGTAACTCTTGGAA
AGGGAAAAGGAAAAAAGAAAAAAAAAAAAAAAGAAACAAAGAAAAGAAAA
AACTAATTGTGATGACTGTGATGGATGCTTGTAATTTTTCTTGTCATTCT
TTTGAATCTTGTTTTACCGTGTGAAATGAAGTTTTTAATTATTGAAAATT
CCCATTGTGGGCCAGCAGCTCCTTCTACCTTGTCACTGACTTATTTTTCC
TTTGTCAACCAATTTGCCATTTTTGAAATCGCAAAGATACAAAGTACAAG
GATCAACATGTGAGAAAGAGAGAATAGACTTAACACACAAACGAACCCAC
ATACAACCGAGACCACTCCCGGAACTCACGTCGAAATTAATCCAGTATCC
CAATCTAGACGAGAGAAGGAATCAGGATGAACCCCAGAAAACATGCTACG
ATTGACCCCTGTGACAAAATGCCCGCTGCTCACATGTGTGAGTACACCAT
AACTGGAAGCCAATGAAGGAGAGCACCGCGGATCAGAGGGGCGCACCATC
GATCACGTAAACACAAGCAGCACGCACATAAATGTCGTGCTGCCAAGACA
CTACTACACGATACCTACACGACGAAGAAAACGACACACGAGAC
back to top