EY685346

Overview
NameEY685346
Unique NameEY685346
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length956
Libraries
Library NameType
Sweet orange bark, greenhouse plantcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig8842 contig Csv1_Contig8842:1..957. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
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BLAST of EY685346 vs. ExPASy Swiss-Prot
Match: CLCD_ARATH (Chloride channel protein CLC-d OS=Arabidopsis thaliana GN=CLC-D PE=1 SV=2)

HSP 1 Score: 124.405 bits (311), Expect = 9.589e-28
Identity = 60/71 (84.51%), Postives = 66/71 (92.96%), Query Frame = 3 
Query:    3 MEMYIDLGPFLNPSPYVVPEDMSLSKVYNLFRQLGLRHIFVVPRASRVIGLITRKDLLIEDGEDSTTVELQ 215
            +EMYIDL PFLNPSPYVVPEDMSL+KVYNLFRQLGLRH+FVVPR SRVIGLITRKDLLIE+  +S+ VELQ
Sbjct:  694 LEMYIDLAPFLNPSPYVVPEDMSLTKVYNLFRQLGLRHLFVVPRPSRVIGLITRKDLLIEENGESSAVELQ 764
[Close]
BLAST of EY685346 vs. ExPASy Swiss-Prot
Match: CLCN7_BOVIN (H(+)/Cl(-) exchange transporter 7 OS=Bos taurus GN=CLCN7 PE=2 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 3.311e-12
Identity = 32/56 (57.14%), Postives = 43/56 (76.79%), Query Frame = 3 
Query:    6 EMYIDLGPFLNPSPYVVPEDMSLSKVYNLFRQLGLRHIFVVPRASRVIGLITRKDL 173
            E  +DL  F+NPSPY VP++ SL +V+ LFR LGLRH+ VV   ++V+GL+TRKDL
Sbjct:  736 ECTMDLSEFMNPSPYTVPQEASLPRVFKLFRALGLRHLVVVDNCNQVVGLVTRKDL 791
[Close]
BLAST of EY685346 vs. ExPASy Swiss-Prot
Match: CLCN7_HUMAN (H(+)/Cl(-) exchange transporter 7 OS=Homo sapiens GN=CLCN7 PE=1 SV=2)

HSP 1 Score: 72.4034 bits (176), Expect = 4.324e-12
Identity = 32/56 (57.14%), Postives = 43/56 (76.79%), Query Frame = 3 
Query:    6 EMYIDLGPFLNPSPYVVPEDMSLSKVYNLFRQLGLRHIFVVPRASRVIGLITRKDL 173
            E  +DL  F+NPSPY VP++ SL +V+ LFR LGLRH+ VV   ++V+GL+TRKDL
Sbjct:  732 ECTMDLSEFMNPSPYTVPQEASLPRVFKLFRALGLRHLVVVDNRNQVVGLVTRKDL 787
[Close]
BLAST of EY685346 vs. ExPASy Swiss-Prot
Match: CLCN7_RAT (H(+)/Cl(-) exchange transporter 7 OS=Rattus norvegicus GN=Clcn7 PE=2 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 5.648e-12
Identity = 32/56 (57.14%), Postives = 43/56 (76.79%), Query Frame = 3 
Query:    6 EMYIDLGPFLNPSPYVVPEDMSLSKVYNLFRQLGLRHIFVVPRASRVIGLITRKDL 173
            E  +DL  F+NPSPY VP++ SL +V+ LFR LGLRH+ VV   ++V+GL+TRKDL
Sbjct:  730 ECTMDLSEFMNPSPYTVPQEASLPRVFKLFRALGLRHLVVVDNHNQVVGLVTRKDL 785
[Close]
BLAST of EY685346 vs. ExPASy Swiss-Prot
Match: CLCN7_MOUSE (H(+)/Cl(-) exchange transporter 7 OS=Mus musculus GN=Clcn7 PE=1 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 5.648e-12
Identity = 32/56 (57.14%), Postives = 43/56 (76.79%), Query Frame = 3 
Query:    6 EMYIDLGPFLNPSPYVVPEDMSLSKVYNLFRQLGLRHIFVVPRASRVIGLITRKDL 173
            E  +DL  F+NPSPY VP++ SL +V+ LFR LGLRH+ VV   ++V+GL+TRKDL
Sbjct:  730 ECTMDLSEFMNPSPYTVPQEASLPRVFKLFRALGLRHLVVVDNHNQVVGLVTRKDL 785
The following BLAST results are available for this feature:
BLAST of EY685346 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 5
Match NameE-valueIdentityDescription
CLCD_ARATH9.589e-2884.51Chloride channel protein CLC-d OS=Arabidopsis thal... [more]
CLCN7_BOVIN3.311e-1257.14H(+)/Cl(-) exchange transporter 7 OS=Bos taurus GN... [more]
CLCN7_HUMAN4.324e-1257.14H(+)/Cl(-) exchange transporter 7 OS=Homo sapiens ... [more]
CLCN7_RAT5.648e-1257.14H(+)/Cl(-) exchange transporter 7 OS=Rattus norveg... [more]
CLCN7_MOUSE5.648e-1257.14H(+)/Cl(-) exchange transporter 7 OS=Mus musculus ... [more]
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Properties
Property NameValue
Genbank descriptionCS00-C2-003-018-A03-CT.F Sweet orange bark, greenhouse plant Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY685346 ID=EY685346; Name=EY685346; organism=Citrus sinensis; type=EST; length=956bp
ACATGGAAATGTACATAGATCTTGGCCCATTTTTGAATCCCTCTCCTTAT
GTTGTTCCCGAAGATATGTCTCTGTCGAAGGTATATAATCTTTTCCGCCA
ACTGGGACTGAGACATATATTTGTCGTCCCTCGTGCTTCTCGTGTGATTG
GTTTGATTACCAGAAAAGATTTGTTGATTGAGGATGGTGAGGATTCAACC
ACAGTGGAGCTCCAATCAACTAGTAGCTCAGCGTCGTGATAAAAGTTTGC
TCACAAGGAATACAGAAGCGGAGCTTCCCCTTTTGAATGGTCTTTTGGTT
GAAGATCATAACTGATGTGTAAGATCTACACTGAAGACCACTTCCTTTGG
CAGTCTGCTCCCACAAATTTTTTCTCCTCAAATCAGATTTTTTGTTTTTC
TTATAGGATGAATTGTTATTCATTGATTACTGTCCCCGCTACATACCGGG
GATGGACCACACCATGAAAATATTGTAACCCTAAATCTCACTAAAAAACT
GAAATATGTAGAAATTATTTTTTCTTTTTTACAAAAAAAAAAACAAAAAA
AAGCAAAGATTACCAATAGAGGATCAAGGAAGTGAACAAAGTCTGATAGA
AAAGAACAAGGGGAGCAGGCGCAATAAGAAACAAAGAATACGGAAAGCAG
GGTGGCACGCACTACGTCTGTTCATACCAGGACCACCTTTACCGCTCACT
GCCAGACCTGTCACTACATCGCAGAGGACACGGACCGCACCTCGAAGACC
TGCGACACAATTCAGAAACCAACGACCTAAGGAAACGAAGAATGACCGAA
CAAAAGCCAAGAAGAAAAGCATATCATACAAAACTAAGGACAGGCGAAGG
TCAAGAGCACCCAAACATGATATGGTCACAGCTCTACAACCAAGCAGCCA
CTCTAGCCATACAGCACTTATCCAAAACTGCTAATAATACGAACATTAGC
ACCCAT
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