EY685321
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of EY685321 vs. ExPASy Swiss-Prot
Match: RD23D_ARATH (Putative DNA repair protein RAD23-4 OS=Arabidopsis thaliana GN=RAD23-4 PE=2 SV=2) HSP 1 Score: 130.183 bits (326), Expect = 3.220e-30 Identity = 71/113 (62.83%), Postives = 81/113 (71.68%), Query Frame = 3 Query: 3 SQTPAPTVAPPQ-SVPESXXXXXXXXXXXXXXXXXVSSV-SDVYGQAASNLVAGSNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASA 335 S T TVA PQ S P + +SV +DVYGQAASNLVAG+ LE+TVQQILDMGGGSWDR+TV+RALRAA+NNPERAVEYLYSGIP Q +PPVA+A A Sbjct: 92 SATQPQTVATPQVSAPTASVPVPTSGTATAAAPATAASVQTDVYGQAASNLVAGTTLESTVQQILDMGGGSWDRDTVVRALRAAFNNPERAVEYLYSGIPAQAEIPPVAQAPA 204
BLAST of EY685321 vs. ExPASy Swiss-Prot
Match: RD23C_ARATH (Putative DNA repair protein RAD23-3 OS=Arabidopsis thaliana GN=RAD23-3 PE=2 SV=2) HSP 1 Score: 130.183 bits (326), Expect = 3.220e-30 Identity = 65/80 (81.25%), Postives = 71/80 (88.75%), Query Frame = 3 Query: 105 VSSVSDVYGQAASNLVAGSNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVAR--ASAG 338 V S DVYGQAASNL AGSNLE+T+QQILDMGGG+WDRETV+ ALRAA+NNPERAVEYLY+GIPEQ VPPVAR ASAG Sbjct: 167 VGSQGDVYGQAASNLAAGSNLESTIQQILDMGGGTWDRETVVLALRAAFNNPERAVEYLYTGIPEQAEVPPVARPPASAG 246
BLAST of EY685321 vs. ExPASy Swiss-Prot
Match: RAD23_ORYSJ (Probable DNA repair protein RAD23 OS=Oryza sativa subsp. japonica GN=RAD23 PE=1 SV=2) HSP 1 Score: 114.005 bits (284), Expect = 2.388e-25 Identity = 60/104 (57.69%), Postives = 70/104 (67.31%), Query Frame = 3 Query: 3 SQTPAPTVAPPQSVPESXXXXXXXXXXXXXXXXXVSSVSDVYGQAASNLVAGSNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVP 314 SQ P VAP +VP + VSS +D YGQA SNLVAGSNLEAT+Q IL+MGGG WDR+ V+ AL AA+NNPERAVEYLYSG+PEQ +P Sbjct: 107 SQAP---VAPATTVPVTVSAPTPTATASPAPAVAVSSEADNYGQATSNLVAGSNLEATIQSILEMGGGIWDRDIVLHALSAAFNNPERAVEYLYSGVPEQMDIP 207
BLAST of EY685321 vs. ExPASy Swiss-Prot
Match: RD23B_ARATH (Putative DNA repair protein RAD23-2 OS=Arabidopsis thaliana GN=RAD23-2 PE=2 SV=2) HSP 1 Score: 109.768 bits (273), Expect = 4.504e-24 Identity = 51/74 (68.92%), Postives = 60/74 (81.08%), Query Frame = 3 Query: 117 SDVYGQAASNLVAGSNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAG 338 SD YGQAAS LV+GS++E VQQI++MGGGSWD+ETV RALRAAYNNPERAV+YLYSGIPE +P + G Sbjct: 130 SDTYGQAASTLVSGSSIEQMVQQIMEMGGGSWDKETVTRALRAAYNNPERAVDYLYSGIPETVTIPATNLSGVG 203
BLAST of EY685321 vs. ExPASy Swiss-Prot
Match: RD23A_ARATH (Putative DNA repair protein RAD23-1 OS=Arabidopsis thaliana GN=RAD23-1 PE=2 SV=3) HSP 1 Score: 107.071 bits (266), Expect = 2.919e-23 Identity = 57/88 (64.77%), Postives = 66/88 (75.00%), Query Frame = 3 Query: 117 SDVYGQAASNLVAGSNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPE--QTAVP------------PVARASAG 338 +D YGQAAS LV+GS+LE VQQI++MGGGSWD+ETV RALRAAYNNPERAV+YLYSGIP+ + AVP PVA AS G Sbjct: 132 TDTYGQAASTLVSGSSLEQMVQQIMEMGGGSWDKETVTRALRAAYNNPERAVDYLYSGIPQTAEVAVPVPEAQIAGSGAAPVAPASGG 219
BLAST of EY685321 vs. ExPASy Swiss-Prot
Match: RD23B_BOVIN (UV excision repair protein RAD23 homolog B OS=Bos taurus GN=RAD23B PE=2 SV=1) HSP 1 Score: 67.0106 bits (162), Expect = 3.348e-11 Identity = 48/127 (37.80%), Postives = 60/127 (47.24%), Query Frame = 3 Query: 3 SQTPAPTVAPPQSVPESXXXXXXXXXXXXXXXXXV-----------SSVSDVYGQAASNLVAGSNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIP----EQTAVPPVARASAG 338 S TPAPT A + P S SS S+++ A S LV G + E V +I+ MG ++RE VI ALRA++NNP+RAVEYL GIP Q V P AS G Sbjct: 125 SVTPAPTTASSEPAPASAAKQEKPAERPVETPVATTPTSTDSTSGDSSRSNLFEDATSALVTGQSYENMVTEIMSMG---YEREQVIAALRASFNNPDRAVEYLLMGIPGDRESQAVVDPPPAASTG 248
BLAST of EY685321 vs. ExPASy Swiss-Prot
Match: RD23B_HUMAN (UV excision repair protein RAD23 homolog B OS=Homo sapiens GN=RAD23B PE=1 SV=1) HSP 1 Score: 65.4698 bits (158), Expect = 9.741e-11 Identity = 39/81 (48.15%), Postives = 50/81 (61.73%), Query Frame = 3 Query: 108 SSVSDVYGQAASNLVAGSNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIP----EQTAVPPVARASAG 338 SS S+++ A S LV G + E V +I+ MG ++RE VI ALRA++NNP+RAVEYL GIP Q V P AS G Sbjct: 171 SSRSNLFEDATSALVTGQSYENMVTEIMSMG---YEREQVIAALRASFNNPDRAVEYLLMGIPGDRESQAVVDPPQAASTG 248 The following BLAST results are available for this feature:
BLAST of EY685321 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 7
Properties
Sequences
The
following sequences are available for this feature:
EST sequence >EY685321 ID=EY685321; Name=EY685321; organism=Citrus sinensis; type=EST; length=339bpback to top |