EY685321

Overview
NameEY685321
Unique NameEY685321
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length339
Libraries
Library NameType
Sweet orange bark, greenhouse plantcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig5764 contig Csv1_Contig5764:213..568. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of EY685321 vs. ExPASy Swiss-Prot
Match: RD23D_ARATH (Putative DNA repair protein RAD23-4 OS=Arabidopsis thaliana GN=RAD23-4 PE=2 SV=2)

HSP 1 Score: 130.183 bits (326), Expect = 3.220e-30
Identity = 71/113 (62.83%), Postives = 81/113 (71.68%), Query Frame = 3
Query:    3 SQTPAPTVAPPQ-SVPESXXXXXXXXXXXXXXXXXVSSV-SDVYGQAASNLVAGSNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASA 335
            S T   TVA PQ S P +                  +SV +DVYGQAASNLVAG+ LE+TVQQILDMGGGSWDR+TV+RALRAA+NNPERAVEYLYSGIP Q  +PPVA+A A
Sbjct:   92 SATQPQTVATPQVSAPTASVPVPTSGTATAAAPATAASVQTDVYGQAASNLVAGTTLESTVQQILDMGGGSWDRDTVVRALRAAFNNPERAVEYLYSGIPAQAEIPPVAQAPA 204          
BLAST of EY685321 vs. ExPASy Swiss-Prot
Match: RD23C_ARATH (Putative DNA repair protein RAD23-3 OS=Arabidopsis thaliana GN=RAD23-3 PE=2 SV=2)

HSP 1 Score: 130.183 bits (326), Expect = 3.220e-30
Identity = 65/80 (81.25%), Postives = 71/80 (88.75%), Query Frame = 3
Query:  105 VSSVSDVYGQAASNLVAGSNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVAR--ASAG 338
            V S  DVYGQAASNL AGSNLE+T+QQILDMGGG+WDRETV+ ALRAA+NNPERAVEYLY+GIPEQ  VPPVAR  ASAG
Sbjct:  167 VGSQGDVYGQAASNLAAGSNLESTIQQILDMGGGTWDRETVVLALRAAFNNPERAVEYLYTGIPEQAEVPPVARPPASAG 246          
BLAST of EY685321 vs. ExPASy Swiss-Prot
Match: RAD23_ORYSJ (Probable DNA repair protein RAD23 OS=Oryza sativa subsp. japonica GN=RAD23 PE=1 SV=2)

HSP 1 Score: 114.005 bits (284), Expect = 2.388e-25
Identity = 60/104 (57.69%), Postives = 70/104 (67.31%), Query Frame = 3
Query:    3 SQTPAPTVAPPQSVPESXXXXXXXXXXXXXXXXXVSSVSDVYGQAASNLVAGSNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVP 314
            SQ P   VAP  +VP +                 VSS +D YGQA SNLVAGSNLEAT+Q IL+MGGG WDR+ V+ AL AA+NNPERAVEYLYSG+PEQ  +P
Sbjct:  107 SQAP---VAPATTVPVTVSAPTPTATASPAPAVAVSSEADNYGQATSNLVAGSNLEATIQSILEMGGGIWDRDIVLHALSAAFNNPERAVEYLYSGVPEQMDIP 207          
BLAST of EY685321 vs. ExPASy Swiss-Prot
Match: RD23B_ARATH (Putative DNA repair protein RAD23-2 OS=Arabidopsis thaliana GN=RAD23-2 PE=2 SV=2)

HSP 1 Score: 109.768 bits (273), Expect = 4.504e-24
Identity = 51/74 (68.92%), Postives = 60/74 (81.08%), Query Frame = 3
Query:  117 SDVYGQAASNLVAGSNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAG 338
            SD YGQAAS LV+GS++E  VQQI++MGGGSWD+ETV RALRAAYNNPERAV+YLYSGIPE   +P    +  G
Sbjct:  130 SDTYGQAASTLVSGSSIEQMVQQIMEMGGGSWDKETVTRALRAAYNNPERAVDYLYSGIPETVTIPATNLSGVG 203          
BLAST of EY685321 vs. ExPASy Swiss-Prot
Match: RD23A_ARATH (Putative DNA repair protein RAD23-1 OS=Arabidopsis thaliana GN=RAD23-1 PE=2 SV=3)

HSP 1 Score: 107.071 bits (266), Expect = 2.919e-23
Identity = 57/88 (64.77%), Postives = 66/88 (75.00%), Query Frame = 3
Query:  117 SDVYGQAASNLVAGSNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPE--QTAVP------------PVARASAG 338
            +D YGQAAS LV+GS+LE  VQQI++MGGGSWD+ETV RALRAAYNNPERAV+YLYSGIP+  + AVP            PVA AS G
Sbjct:  132 TDTYGQAASTLVSGSSLEQMVQQIMEMGGGSWDKETVTRALRAAYNNPERAVDYLYSGIPQTAEVAVPVPEAQIAGSGAAPVAPASGG 219          
BLAST of EY685321 vs. ExPASy Swiss-Prot
Match: RD23B_BOVIN (UV excision repair protein RAD23 homolog B OS=Bos taurus GN=RAD23B PE=2 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 3.348e-11
Identity = 48/127 (37.80%), Postives = 60/127 (47.24%), Query Frame = 3
Query:    3 SQTPAPTVAPPQSVPESXXXXXXXXXXXXXXXXXV-----------SSVSDVYGQAASNLVAGSNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIP----EQTAVPPVARASAG 338
            S TPAPT A  +  P S                             SS S+++  A S LV G + E  V +I+ MG   ++RE VI ALRA++NNP+RAVEYL  GIP     Q  V P   AS G
Sbjct:  125 SVTPAPTTASSEPAPASAAKQEKPAERPVETPVATTPTSTDSTSGDSSRSNLFEDATSALVTGQSYENMVTEIMSMG---YEREQVIAALRASFNNPDRAVEYLLMGIPGDRESQAVVDPPPAASTG 248          
BLAST of EY685321 vs. ExPASy Swiss-Prot
Match: RD23B_HUMAN (UV excision repair protein RAD23 homolog B OS=Homo sapiens GN=RAD23B PE=1 SV=1)

HSP 1 Score: 65.4698 bits (158), Expect = 9.741e-11
Identity = 39/81 (48.15%), Postives = 50/81 (61.73%), Query Frame = 3
Query:  108 SSVSDVYGQAASNLVAGSNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIP----EQTAVPPVARASAG 338
            SS S+++  A S LV G + E  V +I+ MG   ++RE VI ALRA++NNP+RAVEYL  GIP     Q  V P   AS G
Sbjct:  171 SSRSNLFEDATSALVTGQSYENMVTEIMSMG---YEREQVIAALRASFNNPDRAVEYLLMGIPGDRESQAVVDPPQAASTG 248          
The following BLAST results are available for this feature:
BLAST of EY685321 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 7
Match NameE-valueIdentityDescription
RD23D_ARATH3.220e-3062.83Putative DNA repair protein RAD23-4 OS=Arabidopsis... [more]
RD23C_ARATH3.220e-3081.25Putative DNA repair protein RAD23-3 OS=Arabidopsis... [more]
RAD23_ORYSJ2.388e-2557.69Probable DNA repair protein RAD23 OS=Oryza sativa ... [more]
RD23B_ARATH4.504e-2468.92Putative DNA repair protein RAD23-2 OS=Arabidopsis... [more]
RD23A_ARATH2.919e-2364.77Putative DNA repair protein RAD23-1 OS=Arabidopsis... [more]
RD23B_BOVIN3.348e-1137.80UV excision repair protein RAD23 homolog B OS=Bos ... [more]
RD23B_HUMAN9.741e-1148.15UV excision repair protein RAD23 homolog B OS=Homo... [more]
back to top
Properties
Property NameValue
Genbank descriptionCS00-C2-003-013-E10-CT.F Sweet orange bark, greenhouse plant Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY685321 ID=EY685321; Name=EY685321; organism=Citrus sinensis; type=EST; length=339bp
CATCTCAGACTCCTGCACCAACTGTGGCACCGCCACAATCTGTCCCTGAA
TCTGCTCCTACTCCTGCTGCTCCTGCTCCTGCTCCAGCTCCAGCTCCAGC
TCCAGTCTCTTCAGTATCAGATGTGTACGGCCAAGCTGCATCAAATCTTG
TTGCAGGAAGTAATTTAGAAGCTACTGTCCAACAGATTCTTGATATGGGT
GGAGGGAGTTGGGACCGAGAAACTGTTATTCGTGCTTTACGTGCTGCATA
TAACAACCCTGAAAGAGCTGTTGAATATCTGTATTCTGGAATACCTGAGC
AGACTGCAGTTCCACCTGTTGCTCGCGCTTCTGCTGGTG
back to top