EY685279

Overview
NameEY685279
Unique NameEY685279
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length894
Libraries
Library NameType
Sweet orange bark, greenhouse plantcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY685279 vs. ExPASy Swiss-Prot
Match: KTNB1_ARATH (Katanin p80 WD40 repeat-containing subunit B1 homolog 1 OS=Arabidopsis thaliana GN=At5g23430 PE=2 SV=3)

HSP 1 Score: 179.874 bits (455), Expect = 1.739e-44
Identity = 89/171 (52.05%), Postives = 127/171 (74.27%), Query Frame = 3
Query:  192 NEGEAVESLMETHDIFISTLRSRLTKLQVVRHFWERNDIKGGINALRKLPDHSVQADVMSVLMEKMEILNLDLFSCLLPMLMGLLDSKMERHASISLEMLLKLVVVFGPMIHSTLSAPPAVGVDLHAEQRQECCNRCFMQLQKIQKILPILERRGGLLAKCAHELNLILQE 704
            +E   VE +M  H+ F+S+++SRL KLQVVR +WERND+K  I ++ K+ D++V ADV+ ++ E+ EIL LD  + LLP+L  LL S M++H S+SL++LLKLV ++G  I+S+LSAP +VGVD+ AEQR E  +RCF++L+K++  LP L RRGGL+AK   ELNL  QE
Sbjct:  664 SEENIVEDIMGKHNQFVSSMQSRLAKLQVVRRYWERNDVKNSIGSIEKMADNAVTADVLGIITERNEILTLDNCTSLLPLLTALLGSGMDQHLSVSLDLLLKLVRLYGSPIYSSLSAPASVGVDIEAEQRIERYSRCFVELEKVKACLPSLARRGGLVAKSVLELNLAFQE 834          
BLAST of EY685279 vs. ExPASy Swiss-Prot
Match: KTNB1_XENLA (Katanin p80 WD40-containing subunit B1 OS=Xenopus laevis GN=katnb1 PE=1 SV=1)

HSP 1 Score: 98.5969 bits (244), Expect = 5.096e-20
Identity = 54/180 (30.00%), Postives = 89/180 (49.44%), Query Frame = 3
Query:  159 PQISGRDTTVANEGEAVESLMETHDIFISTLRSRLTKLQVVRHFWERNDIKGGINALRKLPDHSVQADVMSVLMEKMEILNLDLFSCLLPMLMGLLDSKMERHASISLEMLLKLVVVFGPMIHSTLSAPPAVGVDLHAEQRQECCNRCFMQLQKIQKILPILERRGGLLAKCAHELNLIL 698
            P +     T   + EAV  + + HD     L SR+  L  VR  W   DIK  I++   + D SV  D+++++ +K  +  LDL   +LP +  +L SK E +       L  ++  F P+I   L+APP+VGVD+  E+R   C  C+ QL+ +  ++     + G       EL+L++
Sbjct:  472 PAVKSSSPTEVVDDEAVSQIRKGHDTMCMVLTSRMRNLDTVRAVWSSGDIKTSIDSAVAINDLSVVVDLLNIINQKASLWKLDLCMTVLPQIEKMLQSKYESYVQTGCISLKLILQRFLPLITDILAAPPSVGVDISREERLSKCKLCYKQLRILSPLVKSKASQSGRYGSAFRELHLLM 651          
BLAST of EY685279 vs. ExPASy Swiss-Prot
Match: KTNB1_XENTR (Katanin p80 WD40-containing subunit B1 OS=Xenopus tropicalis GN=katnb1 PE=2 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 1.135e-19
Identity = 54/180 (30.00%), Postives = 89/180 (49.44%), Query Frame = 3
Query:  159 PQISGRDTTVANEGEAVESLMETHDIFISTLRSRLTKLQVVRHFWERNDIKGGINALRKLPDHSVQADVMSVLMEKMEILNLDLFSCLLPMLMGLLDSKMERHASISLEMLLKLVVVFGPMIHSTLSAPPAVGVDLHAEQRQECCNRCFMQLQKIQKILPILERRGGLLAKCAHELNLIL 698
            P +     T   + EAV  + + HD     L SR+  L  VR  W   DIK  I++   + D SV  D+++++ +K  +  LDL   +LP +  +L SK E +       L  ++  F P+I   L+APP+VGVD+  E+R   C  C+ QL+ +  ++     + G       EL+L++
Sbjct:  472 PAVKTSSPTEVVDDEAVSQIRKGHDTMCMVLTSRMRNLDTVRAVWSSGDIKTSIDSAVAINDLSVVVDLLNIINQKASLWKLDLCLTVLPQIEKMLQSKYESYVQTGCISLKLILQRFLPLITDILAAPPSVGVDISREERLSKCKLCYKQLRILSPLVKSKASQSGRYGSAFRELHLLM 651          
BLAST of EY685279 vs. ExPASy Swiss-Prot
Match: KTNB1_DANRE (Katanin p80 WD40-containing subunit B1 OS=Danio rerio GN=katnb1 PE=2 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 1.255e-18
Identity = 50/166 (30.12%), Postives = 85/166 (51.20%), Query Frame = 3
Query:  201 EAVESLMETHDIFISTLRSRLTKLQVVRHFWERNDIKGGINALRKLPDHSVQADVMSVLMEKMEILNLDLFSCLLPMLMGLLDSKMERHASISLEMLLKLVVVFGPMIHSTLSAPPAVGVDLHAEQRQECCNRCFMQLQKIQKILPILERRGGLLAKCAHELNLIL 698
            EA+  + + HD     L SR   L  VR  W   D+K  +++   + D S+  DV++++  K  +  LDL + +LP +  LL S+ E +       L  ++  F P+I  TL+APP+VGVD+  E+R + C  C+ QL+ +  ++     + G       EL L++
Sbjct:  524 EALAQIRKGHDTMCVMLSSRSKNLDSVRSVWASGDVKTSLDSAVSMNDLSIVVDVLNIINLKPSLWKLDLCTSILPQIEELLQSRYESYVQTGCMSLKLILKRFWPLISDTLNAPPSVGVDITREERHQKCKACYKQLKNLSNVVKNRAEQVGRHGSTFRELQLLM 689          
BLAST of EY685279 vs. ExPASy Swiss-Prot
Match: KTNB1_MOUSE (Katanin p80 WD40-containing subunit B1 OS=Mus musculus GN=Katnb1 PE=1 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 2.141e-18
Identity = 52/166 (31.33%), Postives = 84/166 (50.60%), Query Frame = 3
Query:  201 EAVESLMETHDIFISTLRSRLTKLQVVRHFWERNDIKGGINALRKLPDHSVQADVMSVLMEKMEILNLDLFSCLLPMLMGLLDSKMERHASISLEMLLKLVVVFGPMIHSTLSAPPAVGVDLHAEQRQECCNRCFMQLQKIQKILPILERRGGLLAKCAHELNLIL 698
            +A+  + + HD     L SR   L  VR  W   DIK  +++   + D SV  D+++++ +K  +  LDL + +LP +  LL SK E +       L  ++  F P+I   L+APP+VGVD+  E+R   C  CF QL+ I  ++       G       EL+L++
Sbjct:  489 DAMSQIRKGHDTMFVVLTSRHKNLDTVRAVWTTGDIKTSVDSAVAINDLSVVVDLLNIVNQKASLWKLDLCTTVLPQIEKLLQSKYESYVQTGCTSLKLILQRFLPLITDILAAPPSVGVDISREERLHKCRLCFKQLKSISGLVKSKSGLSGRHGSAFRELHLLM 654          
BLAST of EY685279 vs. ExPASy Swiss-Prot
Match: KTNB1_HUMAN (Katanin p80 WD40-containing subunit B1 OS=Homo sapiens GN=KATNB1 PE=1 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 8.135e-18
Identity = 51/166 (30.72%), Postives = 84/166 (50.60%), Query Frame = 3
Query:  201 EAVESLMETHDIFISTLRSRLTKLQVVRHFWERNDIKGGINALRKLPDHSVQADVMSVLMEKMEILNLDLFSCLLPMLMGLLDSKMERHASISLEMLLKLVVVFGPMIHSTLSAPPAVGVDLHAEQRQECCNRCFMQLQKIQKILPILERRGGLLAKCAHELNLIL 698
            +A+  + + HD     L SR   L  VR  W   DIK  +++   + D SV  D+++++ +K  +  LDL + +LP +  LL SK E +       L  ++  F P+I   L+APP+VGVD+  E+R   C  C+ QL+ I  ++       G       EL+L++
Sbjct:  486 DAMSQIRKGHDTMCVVLTSRHKNLDTVRAVWTMGDIKTSVDSAVAINDLSVVVDLLNIVNQKASLWKLDLCTTVLPQIEKLLQSKYESYVQTGCTSLKLILQRFLPLITDMLAAPPSVGVDISREERLHKCRLCYKQLKSISGLVKSKSGLSGRHGSTFRELHLLM 651          
BLAST of EY685279 vs. ExPASy Swiss-Prot
Match: KTNB1_STRPU (Katanin p80 WD40-containing subunit B1 OS=Strongylocentrotus purpuratus GN=KATNB1 PE=1 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 1.812e-17
Identity = 48/182 (26.37%), Postives = 90/182 (49.45%), Query Frame = 3
Query:  159 PQISGRDTTVANEGEAVESLMETHDIFISTLRSRLTKLQVVRHFWERNDIKGGINALRKLPDHSVQADVMSVLMEKMEILNLDLFSCLLPMLMGLLDSKMERHASISLEMLLKLVVVFGPMIHSTLSAPPAVGVDLHAEQRQECCNRCFMQLQKIQKILPILERRGGLLAKCAHELNLILQE 704
            P+++   +   ++ E +E L + HD     L SR   L VVR  W   D K  + ++  + D ++  D++++++ K  + NLD+   +LP L  LL SK E +   S   L  ++  F  + +  +  PP+ G+D+  E+R   C++C+  L   +  +   +   G L     EL+L+L +
Sbjct:  508 PRVNAPASRKQSDSERIEGLRKGHDSMCQVLSSRHRNLDVVRAIWTAGDAKTSVESVVNMKDQAILVDILNIMLLKKSLWNLDMCVVVLPRLKELLSSKYENYVHTSCACLKLILKNFTSLFNQNIKCPPS-GIDITREERYNKCSKCYSYLIATRGYVEEKQHVSGKLGSSFRELHLLLDQ 688          
BLAST of EY685279 vs. ExPASy Swiss-Prot
Match: KTNB1_CHICK (Katanin p80 WD40-containing subunit B1 OS=Gallus gallus GN=KATNB1 PE=2 SV=2)

HSP 1 Score: 88.9669 bits (219), Expect = 4.037e-17
Identity = 51/180 (28.33%), Postives = 85/180 (47.22%), Query Frame = 3
Query:  159 PQISGRDTTVANEGEAVESLMETHDIFISTLRSRLTKLQVVRHFWERNDIKGGINALRKLPDHSVQADVMSVLMEKMEILNLDLFSCLLPMLMGLLDSKMERHASISLEMLLKLVVVFGPMIHSTLSAPPAVGVDLHAEQRQECCNRCFMQLQKIQKILPILERRGGLLAKCAHELNLIL 698
            P +  +      + E +  + + H      L SR   L  VR  W  +D+K  ++A     D SV  D+++++ +   +  LDL + +LP +  LL SK E +       L  ++  F P+I   L+APP+VGVD+  E+R   C  C+ QL+ I  I+       G       EL+L++
Sbjct:  474 PALKNQSQAELTDEEIMSQIRKGHKTVCMVLTSRHKNLDTVRAVWSTSDMKNSVDAAVATNDLSVVVDLLNIVNQTASLWKLDLCTVVLPQIEKLLQSKYESYVQTGCTSLKLILQRFLPLITDILAAPPSVGVDITREERLHKCRLCYKQLKNISNIVKNKSGLSGRHGSAFRELHLLM 653          
The following BLAST results are available for this feature:
BLAST of EY685279 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 8
Match NameE-valueIdentityDescription
KTNB1_ARATH1.739e-4452.05Katanin p80 WD40 repeat-containing subunit B1 homo... [more]
KTNB1_XENLA5.096e-2030.00Katanin p80 WD40-containing subunit B1 OS=Xenopus ... [more]
KTNB1_XENTR1.135e-1930.00Katanin p80 WD40-containing subunit B1 OS=Xenopus ... [more]
KTNB1_DANRE1.255e-1830.12Katanin p80 WD40-containing subunit B1 OS=Danio re... [more]
KTNB1_MOUSE2.141e-1831.33Katanin p80 WD40-containing subunit B1 OS=Mus musc... [more]
KTNB1_HUMAN8.135e-1830.72Katanin p80 WD40-containing subunit B1 OS=Homo sap... [more]
KTNB1_STRPU1.812e-1726.37Katanin p80 WD40-containing subunit B1 OS=Strongyl... [more]
KTNB1_CHICK4.037e-1728.33Katanin p80 WD40-containing subunit B1 OS=Gallus g... [more]
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Properties
Property NameValue
Genbank descriptionCS00-C2-003-013-A01-CT.F Sweet orange bark, greenhouse plant Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY685279 ID=EY685279; Name=EY685279; organism=Citrus sinensis; type=EST; length=894bp
CCACGCGTCCGGTCACAGGAGATCTATTAGCCACTTCAGATCAAGCAACC
TCTACCACTGCTCATGTAGCAGTTAAGAACAATGATGATATAGCAACTGT
TATTACCCCCCATGTGACAGCTTTATCCTACGAAAGAACCAGCACTCCGA
AAGGAGAACCTCAAATTTCTGGAAGGGATACAACCGTTGCTAATGAGGGG
GAAGCTGTTGAAAGTCTGATGGAAACTCATGATATTTTCATAAGCACCCT
TCGATCCCGCTTGACAAAATTACAGGTGGTGCGGCATTTTTGGGAAAGAA
ATGACATCAAAGGCGGCATTAATGCCTTGAGGAAGCTGCCAGATCACTCT
GTACAGGCTGATGTGATGAGTGTTCTCATGGAGAAAATGGAGATTCTCAA
CCTAGATTTGTTTTCGTGCTTGCTACCCATGCTTATGGGCTTACTGGACA
GTAAGATGGAAAGGCATGCAAGCATCTCTCTGGAGATGCTTCTGAAGCTG
GTTGTAGTCTTTGGCCCAATGATACACTCAACTCTTTCAGCACCTCCAGC
TGTTGGTGTTGATCTTCATGCGGAGCAAAGGCAAGAATGTTGCAACCGGT
GCTTTATGCAGCTGCAAAAGATCCAGAAAATTCTTCCCATCCTTGAAAGG
AGGGGTGGCTTGCTGGCCAAATGTGCCCATGAATTGAATTTAATTCTTCA
AGAATCATAAGCAACACTTTTAACCTTCATCCCCATTTAAGTTTTTTGCT
GAACCTTCAGCGGGGGAGTTGGCGGAAACCCTCTTAACGGGAATTTATTT
GAAAAAGCATTTTCACATTCGAATTTTGGGGCAGACACAATTTTTGTCTG
GGTGGCCTTTTAAATTTCTAAAGCACTCCCAAGGAAATTCAATC
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