EY685274

Overview
NameEY685274
Unique NameEY685274
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length922
Libraries
Library NameType
Sweet orange bark, greenhouse plantcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
EY685274_ssr465 microsatellite EY685274_ssr465:465..476. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
BLAST of EY685274 vs. ExPASy Swiss-Prot
Match: FMDA_METME (Formamidase OS=Methylophilus methylotrophus GN=fmdA PE=1 SV=1)

HSP 1 Score: 101.679 bits (252), Expect = 4.607e-25
Identity = 57/136 (41.91%), Postives = 76/136 (55.88%), Query Frame = 1
Query:  211 FCGAIAMNRFLDLFCKILPGGMYAEPVAPMAPTPLLVIPIFDI*PCEPGFSKWVMYEGIIVYDSGRPHYLYATAAYSHASLYAIDYLSIFGYSDEQVYLLLSCCPCERRISGIDDSPNAVATLAVPTAIFDHDIRP 618
            FCGAI M  +LD+   ++  G+    +           P+F   P  P +  ++++EGI V ++G+ HYL    AY  A L AI+YL  FGYS EQ   +L   P E  ISGI D PNA ATL +PT IF+ DIRP
Sbjct:  262 FCGAIEMAGYLDIKVGLIKDGVKKYGIKN---------PVFQPSPITPTYRDYMIFEGISVDEAGKQHYLDVHIAYRQACLNAIEYLKKFGYSGEQAVSILGTAPVEGHISGIVDIPNACATLWIPTEIFEFDIRP 388          

HSP 2 Score: 28.8758 bits (63), Expect = 4.607e-25
Identity = 11/21 (52.38%), Postives = 15/21 (71.43%), Query Frame = 2
Query:   47 AMDAAKTIPRTDIGGYCDIRN 109
            A + A+T+P  D GG CDI+N
Sbjct:  208 AAEGARTVPPRDHGGNCDIKN 228          

HSP 3 Score: 25.7942 bits (55), Expect = 4.607e-25
Identity = 11/27 (40.74%), Postives = 16/27 (59.26%), Query Frame = 3
Query:  132 YHPEVEGETYLSTANIHCSPGDGEVSF 212
            Y P    +  LS  ++H S GDGE++F
Sbjct:  236 YFPVYVKDGGLSMGDLHFSQGDGEITF 262          
BLAST of EY685274 vs. ExPASy Swiss-Prot
Match: FMDA_SCHPO (Putative formamidase C869.04 OS=Schizosaccharomyces pombe GN=SPAC869.04 PE=2 SV=1)

HSP 1 Score: 102.064 bits (253), Expect = 1.485e-22
Identity = 56/138 (40.58%), Postives = 79/138 (57.25%), Query Frame = 1
Query:  211 FCGAIAMNRFLDLFCKILPGGMYAEPVAPMAPTPLLVIPIFDI*PCEPGFS--KWVMYEGIIVYDSGRPHYLYATAAYSHASLYAIDYLSIFGYSDEQVYLLLSCCPCERRISGIDDSPNAVATLAVPTAIFDHDIRP 618
            FCGAI M   + + CKIL  G     ++ +A    + +P     P EP FS  +++ +EG  V +SG+ HYL  T AY    L  I+Y   FGY+D Q+YLLLSC P +  ++GI D PN+  T+ VP  IF+ D+ P
Sbjct:  265 FCGAIEMAGSITIKCKILKNG-----ISDLAMKSPMYLPG----PVEPHFSPSRYLTFEGFSVDESGKQHYLCTTTAYRQTCLRVIEYFRRFGYNDYQLYLLLSCAPIQGHVAGIVDIPNSCTTIGVPMDIFEFDVSP 393          

HSP 2 Score: 25.7942 bits (55), Expect = 1.485e-22
Identity = 10/17 (58.82%), Postives = 13/17 (76.47%), Query Frame = 3
Query:  162 LSTANIHCSPGDGEVSF 212
            LS  ++H S GDGE+SF
Sbjct:  249 LSIGDLHFSQGDGEISF 265          
BLAST of EY685274 vs. ExPASy Swiss-Prot
Match: AMDA_MYCSM (Acetamidase OS=Mycobacterium smegmatis GN=amdA PE=1 SV=2)

HSP 1 Score: 70.4774 bits (171), Expect = 6.227e-15
Identity = 43/109 (39.45%), Postives = 59/109 (54.13%), Query Frame = 1
Query:  208 HFCGAIAMNRFLDLFCKILPGGMYAEPVAPMAPTPLLVIPIFDI*PCEPGFSKWVMYEGIIV-YDSGRPHYLYATAAYSHASLYAIDYLSIFGYSDEQVYLLLSCCPCE 531
            +FCGAI M  F+D+   ++ GGM    V           PIF     EP +S+W+ + GI V +   R  Y+ AT AY +A L AI+YL  +GY+ EQ YL+L   P E
Sbjct:  269 NFCGAIEMGGFIDMHVDLIKGGMETYGVTTN--------PIFMPGRVEPLYSEWLTFIGISVDHAENRNAYMDATMAYRNACLNAIEYLKKWGYTGEQAYLILGTSPIE 369          

HSP 2 Score: 26.1794 bits (56), Expect = 6.227e-15
Identity = 12/25 (48.00%), Postives = 16/25 (64.00%), Query Frame = 2
Query:   35 LVCIAMDAAKTIPRTDIGGYCDIRN 109
            L  IA D A+T+P  + GG  DI+N
Sbjct:  212 LQAIANDGARTVPPRENGGNHDIKN 236          

HSP 3 Score: 25.0238 bits (53), Expect = 6.227e-15
Identity = 12/23 (52.17%), Postives = 16/23 (69.57%), Query Frame = 3
Query:  144 VEGETYLSTANIHCSPGDGEVSF 212
            VEG   LS  ++H S GDGE++F
Sbjct:  249 VEG-AMLSGGDLHFSQGDGEINF 270          
The following BLAST results are available for this feature:
BLAST of EY685274 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 3
Match NameE-valueIdentityDescription
FMDA_METME4.607e-2541.91Formamidase OS=Methylophilus methylotrophus GN=fmd... [more]
FMDA_SCHPO1.485e-2240.58Putative formamidase C869.04 OS=Schizosaccharomyce... [more]
AMDA_MYCSM6.227e-1539.45Acetamidase OS=Mycobacterium smegmatis GN=amdA PE=... [more]
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Properties
Property NameValue
Genbank descriptionCS00-C2-003-011-H07-CT.F Sweet orange bark, greenhouse plant Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY685274 ID=EY685274; Name=EY685274; organism=Citrus sinensis; type=EST; length=922bp
CCACGCGTCCGACATCCCGTACGGAGCATCCTCACTGGTCTGTATTGCTA
TGGATGCTGCTAAGACTATTCCACGAACAGACATTGGCGGATACTGCGAC
ATCCGCAATGCATAAACAGAGGTTCTAACCATACCATCCAGAAGTTGAGG
GTGAAACCTATCTTAGCACCGCCAATATACACTGTTCTCCGGGCGATGGT
GAGGTCTCATTTCTGTGGGGCTATTGCTATGAACAGGTTTCTTGATCTCT
TCTGCAAAATCCTGCCAGGTGGAATGTATGCAGAACCTGTAGCGCCTATG
GCGCCAACTCCTCTTCTTGTCATTCCTATCTTTGACATATGACCATGCGA
GCCGGGATTCTCAAAATGGGTGATGTATGAAGGGATCATCGTGTATGATA
GTGGGAGGCCCCACTACTTATATGCCACTGCCGCTTACTCCCACGCATCC
CTCTACGCCATTGACTATCTATCTATATTTGGCTACTCCGATGAACAAGT
ATATCTGCTTTTATCATGCTGTCCATGCGAACGAAGGATCTCTGGGATAG
ATGACTCTCCCAATGCTGTTGCAACCCTTGCAGTTCCGACAGCAATATTT
GATCATGATATTCGTCCGACAACCAGCAAGGTGCCCTGTTGGACCCCCGG
TTAGTGAGGAAACCAGATGTTTTTAAATGTTCTTATGAAAGGAACTTGCC
CCCTACAGAGAACCCCGGTAACCCGAATATAGGCTAATCCAAAGCGTCTT
ACAATAAAAAAAACCATTTGGATCCGAAATGGGAATTCCAAACGGGCTTT
GTTAACGATAAATTCCTTCCTTTCTTCTTTTGATTAAGCCTTTTTGCCTT
TAAAATAGGCCCTAGGTTTTCCTTTTCGGAGCCCCAGCCTTTACACTTTT
TCATTTTCCTTGGAATAAAAAA
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