EY685262

Overview
NameEY685262
Unique NameEY685262
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length948
Libraries
Library NameType
Sweet orange bark, greenhouse plantcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of EY685262 vs. ExPASy Swiss-Prot
Match: CID2_ARATH (Polyadenylate-binding protein-interacting protein 2 OS=Arabidopsis thaliana GN=CID2 PE=1 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 4.398e-17
Identity = 58/161 (36.02%), Postives = 84/161 (52.17%), Query Frame = 3 
Query:   84 STLNPNAPLFIPAAFRQVEDFSPEWWQLITTSTWYHNYWLSQHQDEDGFYDNGGDDEFDVSNVADLLPDTFDLDAGENFSSIEAQFDEFVMSFE--SELENISSPPPA-------NDADALMKNLRVSKSSMEAAKYVEKPAKYVNPKCSPRR---IQQPR 530
            STLNPNAP+F P  FR+VEDFSP+WW L+TTS W+ ++WLS + + +     GGDD                      FS +E +F+E + S +  S  + ++    A       N A++  + +  SK S  + KY +K  KY+NP  + RR   I QPR
Sbjct:   10 STLNPNAPVFDPVEFREVEDFSPKWWDLVTTSKWFRDFWLSANSENEFL---GGDD----------------------FSVMEEEFEEMIASSDGGSMADTVTEADVASYLKMLLNIAESTKEKIYRSKVSSCSPKYNQK--KYMNPNFNCRRNHHIYQPR 143
The following BLAST results are available for this feature:
BLAST of EY685262 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
CID2_ARATH4.398e-1736.02Polyadenylate-binding protein-interacting protein ... [more]
back to top
Properties
Property NameValue
Genbank descriptionCS00-C2-003-011-G07-CT.F Sweet orange bark, greenhouse plant Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY685262 ID=EY685262; Name=EY685262; organism=Citrus sinensis; type=EST; length=948bp
CCACGCGTCCGCGAGAAATATCTTATCTCACATCAAAGATCAGAAGTGAG
AATTGGACTTTGATGGCGCTAGTTTCAGGAAGGTCGACGTTGAACCCCAA
TGCCCCACTCTTCATTCCAGCTGCTTTTCGCCAAGTGGAGGATTTCTCCC
CCGAATGGTGGCAGCTGATCACGACCTCCACATGGTACCACAACTACTGG
CTCAGCCAGCATCAAGATGAGGATGGCTTTTATGACAATGGTGGAGATGA
TGAATTTGATGTCAGCAATGTAGCTGACTTGCTTCCAGATACGTTTGACC
TTGATGCTGGCGAAAATTTCTCTAGCATAGAAGCTCAATTCGATGAGTTT
GTTATGTCGTTTGAAAGTGAACTGGAAAACATTTCATCCCCACCGCCTGC
AAATGACGCAGATGCACTGATGAAGAATTTGAGGGTGTCGAAATCTTCCA
TGGAAGCTGCCAAATATGTTGAGAAGCCGGCCAAGTATGTGAACCCAAAG
TGCAGCCCCCGCCGCATCCAGCAACCCCGTTGAAGAGGGAAAATGTGCAA
TGACTGTTGTTTGCAGTATGTAGCTTTTTGCTTTCTGTAGTTGCTGTATA
AAGCAAGGGTCTATCCTCTTTGTATAACTCCTTGGTCCATTCTCGGCCTT
AATTTCAGTGAAAACAAACAATCTTTGGGGGAAAAAATTGTAAAACCAAA
AAAACAACAAAAAAAAAACAAAAAAAAGGCCGGCGGTCTAAAAGATCCCA
AGCTTTCGTAACCAGGGACGAGGAAAGGCCAGCTACTTCAAAAGTGCAAA
CTAGATTTAAAGTCCAGGGGCCCGGGGCTTTTAAAAGCGAGGGGGGGGGG
AAAACCACACGAGGCTCCCCCAACCATTAATGCGTATCAATAATAACCCC
CCTTTCCAGCACCGGCAGAATACACCGCAATAACCCCCCCCCCCAACC
back to top