EY685238

Overview
NameEY685238
Unique NameEY685238
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length854
Libraries
Library NameType
Sweet orange bark, greenhouse plantcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY685238 vs. ExPASy Swiss-Prot
Match: XTH31_ARATH (Probable xyloglucan endotransglucosylase/hydrolase protein 31 OS=Arabidopsis thaliana GN=XTH31 PE=2 SV=2)

HSP 1 Score: 231.876 bits (590), Expect = 3.580e-60
Identity = 96/147 (65.31%), Postives = 121/147 (82.31%), Query Frame = 1
Query:    1 RELRFHLWFDPTQDFHHYAVLWSPSELIFFVDDVPIRRYPRKSDATFPLRPMYLYGSIWDASSWATEEGRYKADYKYQPFVGQYRNFKIAGCTADGPSGCHPPPASPSGSGVLSQQQVAAMLWVQRTYLIYGYWYDPNRDHTEIPEC 441
            RE++F LWFDPTQDFHHYA+LW+P++++FFVDDVPIR Y RK++A FP RPM++YGSIWDAS WATE GR KADY+YQPFV +Y+NFK+AGCTAD  S C PP  +P  +  LS+QQ+AA+ W QR +L+Y Y +DP RDHT+ PEC
Sbjct:  147 REMKFTLWFDPTQDFHHYAILWNPNQIVFFVDDVPIRTYNRKNEAIFPTRPMWVYGSIWDASDWATENGRIKADYRYQPFVAKYKNFKLAGCTADSSSSCRPPSPAPMRNRGLSRQQMAALTWAQRNFLVYNYCHDPKRDHTQTPEC 293          
BLAST of EY685238 vs. ExPASy Swiss-Prot
Match: XTH32_ARATH (Probable xyloglucan endotransglucosylase/hydrolase protein 32 OS=Arabidopsis thaliana GN=XTH32 PE=2 SV=1)

HSP 1 Score: 219.935 bits (559), Expect = 1.408e-56
Identity = 97/147 (65.99%), Postives = 116/147 (78.91%), Query Frame = 1
Query:    1 RELRFHLWFDPTQDFHHYAVLWSPSELIFFVDDVPIRRYPRKSDATFPLRPMYLYGSIWDASSWATEEGRYKADYKYQPFVGQYRNFKIAGCTADGPSGCHPPPASPSGSGVLSQQQVAAMLWVQRTYLIYGYWYDPNRDHTEIPEC 441
            RE++F LWFDPT+DFHHYA+LWSP E+IF VDD+PIRRYP+KS +TFPLRPM+LYGSIWDASSWATE+G+YKADYKYQPF  +Y NFK  GCTA   + C+P  ASP  SG L++QQ  AM WVQ   ++Y Y  D  RDH+  PEC
Sbjct:  151 REMKFRLWFDPTKDFHHYAILWSPREIIFLVDDIPIRRYPKKSASTFPLRPMWLYGSIWDASSWATEDGKYKADYKYQPFTAKYTNFKALGCTAYSSARCYPLSASPYRSGGLTRQQHQAMRWVQTHSMVYNYCKDYKRDHSLTPEC 297          
BLAST of EY685238 vs. ExPASy Swiss-Prot
Match: XTH30_ARATH (Probable xyloglucan endotransglucosylase/hydrolase protein 30 OS=Arabidopsis thaliana GN=XTH30 PE=2 SV=2)

HSP 1 Score: 139.428 bits (350), Expect = 2.418e-32
Identity = 81/206 (39.32%), Postives = 114/206 (55.34%), Query Frame = 1
Query:    1 RELRFHLWFDPTQDFHHYAVLWSPSELIFFVDDVPIRRYPRKS--DATFPLRPMYLYGSIWDASSWATEEGRYKADYKYQPFVGQYRNFKIAGCTADGPSGCHPPPASPSGSGVLSQ-------QQVAAMLWVQRTYLIYGYWYDPNRDHTEIPEC**LGVRVHGPIDALIWGATARRFRALDAAIHG--ESGGRTRARREAQGPE 585
            RE R+ LWFDP+++FH Y++LW+P ++IF+VDDVPIR   R     A +P +PM LY +IWDAS WAT  G+YKA+YK+ PFV ++++F + GC+ D P    P   S S   + SQ        Q AAM   ++ ++ Y Y YD  R    +PEC             +I  A   RF+       G  E+  R R RR+ + PE
Sbjct:  139 REERYRLWFDPSKEFHRYSILWTPHKIIFWVDDVPIREVIRNDAMGADYPAKPMALYATIWDASDWATSGGKYKANYKFAPFVAEFKSFSLDGCSVD-PIQEVPMDCSDSVDFLESQDYSSINSHQRAAMRRFRQRFMYYSYCYDTLRYPEPLPEC-------------VIVPAEKDRFKETGRLKFGGTEARERRRNRRQQRRPE 330          
BLAST of EY685238 vs. ExPASy Swiss-Prot
Match: XTH28_ARATH (Probable xyloglucan endotransglucosylase/hydrolase protein 28 OS=Arabidopsis thaliana GN=XTH28 PE=2 SV=1)

HSP 1 Score: 128.642 bits (322), Expect = 4.268e-29
Identity = 73/208 (35.10%), Postives = 106/208 (50.96%), Query Frame = 1
Query:    1 RELRFHLWFDPTQDFHHYAVLWSPSELIFFVDDVPIRRYPRKSD--ATFPLRPMYLYGSIWDASSWATEEGRYKADYKYQPFVGQYRNFKIAGCTADG----PSGCHPPPASPSGSGVLSQQQVAAMLWVQRTYLIYGYWYDPNRDHTEIPEC**LGVRVHGPIDALIWGATARRFRALDAAI-----HGESGGRTRARREAQGPEDI 591
            RE R++LWFDPT+DFH Y++LWS S +IF+VD+VPIR   R +     FP +PM LY +IWD S WAT+ G+Y  +YKY P+V Q+ +  + GC  D     PS       +   +  +++ Q   M   ++ ++ Y Y YD  R    + EC             ++  A A+R R  D        HG   G+ R+R      E I
Sbjct:  138 REERYNLWFDPTEDFHQYSILWSLSHIIFYVDNVPIREVKRTASMGGDFPAKPMSLYSTIWDGSKWATDGGKYGVNYKYAPYVSQFTDLILHGCAVDPTEKFPSCKDEAVQNLRLASEITESQRNKMEIFRQKHMTYSYCYDHMRYKVVLSEC-------------VVNPAEAKRLRVYDPVTFGGIPHGHRRGKHRSRSRLARTESI 332          
BLAST of EY685238 vs. ExPASy Swiss-Prot
Match: XTH33_ARATH (Probable xyloglucan endotransglucosylase/hydrolase protein 33 OS=Arabidopsis thaliana GN=XTH33 PE=2 SV=2)

HSP 1 Score: 125.946 bits (315), Expect = 2.766e-28
Identity = 58/162 (35.80%), Postives = 89/162 (54.94%), Query Frame = 1
Query:    1 RELRFHLWFDPTQDFHHYAVLWSPSELIFFVDDVPIRRYPRKSDAT--FPLRPMYLYGSIWDASSWATEEGRYKADYKYQPFVGQYRNFKIAGCTADGPSGCHPPPASPSGSGV-------------LSQQQVAAMLWVQRTYLIYGYWYDPNRDHTEIPEC 441
            RE +F+ WFDPTQ FH Y ++W+    +F VD++P+R++P +   T  +P +PM LY ++WD S WAT+ G+Y  +YKY PFV    + +++GC+ +  S     P + SG  +             LS+ Q+ AM W +R  + Y Y  D  R      EC
Sbjct:  148 REEKFYFWFDPTQAFHDYTLIWNSHHTVFLVDNIPVRQFPNRGAFTSAYPSKPMSLYVTVWDGSEWATKGGKYPVNYKYAPFVVSVADVELSGCSVNNGSSTGSGPCTKSGGSISSLDPVDGQDFATLSKNQINAMDWARRKLMFYSYCSDKPRYKVMPAEC 309          
BLAST of EY685238 vs. ExPASy Swiss-Prot
Match: XTH29_ARATH (Probable xyloglucan endotransglucosylase/hydrolase protein 29 OS=Arabidopsis thaliana GN=XTH29 PE=2 SV=1)

HSP 1 Score: 125.946 bits (315), Expect = 2.766e-28
Identity = 63/169 (37.28%), Postives = 92/169 (54.44%), Query Frame = 1
Query:    1 RELRFHLWFDPTQDFHHYAVLWSPSELIFFVDDVPIRRYPRKSD--ATFPLRPMYLYGSIWDASSWATEEGRYKADYKYQPFVGQYRNFKIAGCTADGPSGCHPPPASPSGSG--------------------VLSQQQVAAMLWVQRTYLIYGYWYDPNRDHTEIPEC 441
            RE R+ LWFDP+++FH Y++LW+P+++IF+VDDVPIR   RK +    +P +PM LY +IWDASSWAT  G++  DY + PFV ++++  + GC     S   P   + +  G                     +S +Q  AM   +  Y+ Y Y YD  R     PEC
Sbjct:  147 REERYRLWFDPSKEFHRYSILWTPTKIIFWVDDVPIREILRKEEMNGDYPQKPMSLYATIWDASSWATSGGKFGVDYTFSPFVSEFKDIALDGCNV---SDSFPGENNNNNIGNYNNINCSVSDQFLMSNDYSTISPKQATAMRRFRERYMYYSYCYDTIRYSVPPPEC 312          
BLAST of EY685238 vs. ExPASy Swiss-Prot
Match: XTH27_ARATH (Probable xyloglucan endotransglucosylase/hydrolase protein 27 OS=Arabidopsis thaliana GN=XTH27 PE=2 SV=2)

HSP 1 Score: 124.79 bits (312), Expect = 6.163e-28
Identity = 73/210 (34.76%), Postives = 108/210 (51.43%), Query Frame = 1
Query:    1 RELRFHLWFDPTQDFHHYAVLWSPSELIFFVDDVPIRRYPRKSD--ATFPLRPMYLYGSIWDASSWATEEGRYKADYKYQPFVGQYRNFKIAGCTADGPSGCHPPPASPSGSGVLSQQQV-----AAMLWVQRTYLIYGYWYDPNRDHTEIPEC**LGVRVHGPIDALIWGATARRFRALDAAIHG-----ESGGRTRARR-EAQGPEDI 591
            RE R++LWFDPT+DFH Y++LWS S +IFFVD+VPIR   R ++    FP +PM LY +IWD S WAT  G+Y  +YKY P++ ++ +  + GC  D P    P     +   + + Q++     + M   +R  + Y Y YD  R +  + EC             ++  A A+R R  D    G        G+ R++R    G E I
Sbjct:  138 REERYNLWFDPTEDFHQYSILWSDSHIIFFVDNVPIREVKRTAEMGGHFPSKPMSLYTTIWDGSKWATNGGKYGVNYKYAPYIARFSDLVLHGCPVD-PIEQFPRCDEGAAEDMRAAQEITPSQRSKMDVFRRRLMTYSYCYDRARYNVALSEC-------------VVNPAEAQRLRVYDPVRFGGIPRRHRNGKHRSKRSRVDGTESI 333          
BLAST of EY685238 vs. ExPASy Swiss-Prot
Match: XTH25_ARATH (Probable xyloglucan endotransglucosylase/hydrolase protein 25 OS=Arabidopsis thaliana GN=XTH25 PE=2 SV=2)

HSP 1 Score: 120.939 bits (302), Expect = 8.899e-27
Identity = 63/151 (41.72%), Postives = 81/151 (53.64%), Query Frame = 1
Query:    1 RELRFHLWFDPTQDFHHYAVLWSPSELIFFVDDVPIRRYP--RKSDATFP-LRPMYLYGSIWDASSWATEEGRYKADYKYQPFVGQYRNFKIAGCTADGPSGCHPPPASPSGSGVLSQQQVAAMLWVQRTYLIYGYWYDPNRDHTEIP-EC 441
            RE +FHLWFDPT DFH Y+VLW+P  ++F VDD+P+R +   +     +P L+PM LY S+W+A  WAT  G  K D+   PF   YRNF+   C + G     P  +    S  L       M  VQR Y+IY Y  D  R     P EC
Sbjct:  132 REQQFHLWFDPTADFHTYSVLWNPHHIVFMVDDIPVREFKNLQHMGIQYPKLQPMRLYSSLWNADQWATRGGLVKTDWSKAPFTASYRNFRADACVSSGGRSSCPAGSPRWFSQRLDLTAEDKMRVVQRKYMIYNYCTDTKRFPQGFPKEC 282          
BLAST of EY685238 vs. ExPASy Swiss-Prot
Match: XTH15_ARATH (Probable xyloglucan endotransglucosylase/hydrolase protein 15 OS=Arabidopsis thaliana GN=XTH15 PE=1 SV=1)

HSP 1 Score: 119.783 bits (299), Expect = 1.982e-26
Identity = 68/160 (42.50%), Postives = 87/160 (54.37%), Query Frame = 1
Query:    1 RELRFHLWFDPTQDFHHYAVLWSPSELIFFVDDVPIRRY--PRKSDATFP-LRPMYLYGSIWDASSWATEEGRYKADYKYQPFVGQYRNFKIAGCTADGPSGCHPPPASPSGSGVLSQQQVAAML---------WVQRTYLIYGYWYDPNRDHTEI-PEC 441
            RE +F+LWFDPT++FH Y+++W P  +IF VD++PIR +    K    FP  +PM +Y S+W+A  WAT  G  K D+   PF   YR F  A CTA   SGC P   S  G G L   QVA  L         WVQ+ ++IY Y  D  R      PEC
Sbjct:  130 REQQFYLWFDPTKNFHTYSIVWRPQHIIFLVDNLPIRVFNNAEKLGVPFPKSQPMRIYSSLWNADDWATRGGLVKTDWSKAPFTAYYRGFNAAACTAS--SGCDPKFKSSFGDGKL---QVATELNAYGRRRLRWVQKYFMIYNYCSDLKRFPRGFPPEC 284          
BLAST of EY685238 vs. ExPASy Swiss-Prot
Match: XTH8_ORYSJ (Xyloglucan endotransglycosylase/hydrolase protein 8 OS=Oryza sativa subsp. japonica GN=XTH8 PE=1 SV=1)

HSP 1 Score: 118.242 bits (295), Expect = 5.768e-26
Identity = 53/142 (37.32%), Postives = 78/142 (54.93%), Query Frame = 1
Query:    1 RELRFHLWFDPTQDFHHYAVLWSPSELIFFVDDVPIRRYPRKSDATFP-LRPMYLYGSIWDASSWATEEGRYKADYKYQPFVGQYRNFKIAGCTADGPSGCHPPPASPSGSGV-----LSQQQVAAMLWVQRTYLIYGYWYD 408
            +E +F+LWFDPT DFH Y ++W+P  +IF VDDVP+R + +  D  +P  +PM L+ ++WD S WAT  G  K D+   PFV  YR +    C  + P+G       P G+       L   ++  + W +R Y+ Y Y  D
Sbjct:  134 KEHQFYLWFDPTADFHTYKIIWNPQNIIFQVDDVPVRTFKKYDDLAYPQSKPMRLHATLWDGSYWATRHGDVKIDWSGAPFVVSYRGYSTNACVNNNPAGGWSSSWCPEGTSAWIHRELDGAELGTVAWAERNYMSYNYCAD 275          
The following BLAST results are available for this feature:
BLAST of EY685238 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 42
Match NameE-valueIdentityDescription
XTH31_ARATH3.580e-6065.31Probable xyloglucan endotransglucosylase/hydrolase... [more]
XTH32_ARATH1.408e-5665.99Probable xyloglucan endotransglucosylase/hydrolase... [more]
XTH30_ARATH2.418e-3239.32Probable xyloglucan endotransglucosylase/hydrolase... [more]
XTH28_ARATH4.268e-2935.10Probable xyloglucan endotransglucosylase/hydrolase... [more]
XTH33_ARATH2.766e-2835.80Probable xyloglucan endotransglucosylase/hydrolase... [more]
XTH29_ARATH2.766e-2837.28Probable xyloglucan endotransglucosylase/hydrolase... [more]
XTH27_ARATH6.163e-2834.76Probable xyloglucan endotransglucosylase/hydrolase... [more]
XTH25_ARATH8.899e-2741.72Probable xyloglucan endotransglucosylase/hydrolase... [more]
XTH15_ARATH1.982e-2642.50Probable xyloglucan endotransglucosylase/hydrolase... [more]
XTH8_ORYSJ5.768e-2637.32Xyloglucan endotransglycosylase/hydrolase protein ... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionCS00-C2-003-011-E01-CT.F Sweet orange bark, greenhouse plant Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY685238 ID=EY685238; Name=EY685238; organism=Citrus sinensis; type=EST; length=854bp
AGAGAATTGAGGTTTCATCTCTGGTTTGATCCAACTCAAGACTTTCATCA
CTATGCTGTGCTATGGTCCCCAAGTGAGCTCATATTCTTCGTGGATGATG
TGCCAATTAGAAGGTATCCAAGAAAGAGCGATGCCACATTTCCCTTAAGA
CCAATGTATCTGTACGGTTCAATATGGGATGCATCATCATGGGCCACCGA
GGAGGGCAGATACAAAGCCGACTATAAGTACCAACCTTTTGTTGGTCAGT
ACAGAAATTTCAAAATAGCAGGTTGCACCGCGGACGGGCCATCCGGGTGC
CACCCACCCCCGGCCTCGCCGTCCGGGTCCGGCGTCCTGAGCCAGCAGCA
AGTTGCCGCAATGCTATGGGTTCAGAGGACCTACCTGATTTATGGCTATT
GGTATGATCCCAATAGAGACCATACCGAAATACCCGAGTGCTAATAATTA
GGGGTAAGGGTACATGGTCCCATTGACGCCTTGATCTGGGGTGCAACGGC
TCGCCGTTTCCGAGCACTAGACGCGGCAATCCACGGGGAAAGCGGGGGGC
GAACCCGGGCACGCAGGGAGGCGCAGGGGCCAGAGGACATCGCGCGCTGC
GGCTCGTGACCGGAGCCACCTCGCAAATAGCATAGTCGGAAGGAGGAGAA
GACCGAATGAACGTGAAACGCGCACAATCACGTCAGCACAACGACCATAG
ACAGCTCCCGGCACCCGCCAGACACGACATCTCCACCAGATGACCGAGAC
ACCTGCGCTCGGCCGACAACGCTGCGCCCGCCGCACGCCCGCGGCATCTC
CTACACCACGTCGAGTCTAAGACGGCCACGCGCACACGGCACGCGTGCCG
GCCC
back to top